Genome Atlas - 3.0 (beta)

35 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	Number of genes	Coding density	Bp/gene	Estimated # proteins	True proteins ratio

1	Anaeromyxobacter dehalogenans 2CP-1	BProt DM	20095	1	5,029,329	25.3	4,473	0.9	1,124	N/A	N/A
2	Anaeromyxobacter dehalogenans 2CP-C	BProt DM	12634	1	5,013,479	25.1	4,346	0.9	1,154	3,811	N/A
3	Anaeromyxobacter sp. Fw109-5	BProt DM	17729	1	5,277,990	26.5	4,466	0.9	1,182	3,864	N/A
4	Anaeromyxobacter sp. K	BProt DM	19743	1	5,061,632	25.2	4,457	0.9	1,136	N/A	N/A
5	Bdellovibrio bacteriovorus HD100	BProt DB	9637	1	3,782,950	49.3	3,583	0.9	1,056	3,036	N/A
6	Desulfatibacillum alkenivorans AK-01	BProt DD	19449	1	6,517,073	45.5	5,252	0.9	1,241	N/A	N/A
7	Desulfobacterium autotrophicum HRM2	BProt DD	20931	2	5,657,782	51.2	4,947	0.9	1,144	N/A	N/A
8	Desulfococcus oleovorans Hxd3	BProt DD	18007	1	3,944,167	43.8	3,265	0.9	1,208	N/A	N/A
9	Desulfohalobium retbaense DSM 5692	BProt DD	29199	2	2,909,567	42.7	2,526	0.8	1,152	N/A	N/A
10	Desulfomicrobium baculatum DSM 4028	BProt DD	29527	1	3,942,657	41.4	3,436	0.9	1,148	N/A	N/A
11	Desulfotalea psychrophila LSv54	BProt DD	12751	3	3,659,634	53.4	3,236	0.9	1,131	2,605	N/A
12	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	BProt DD	29493	1	2,873,437	41.9	2,356	0.8	1,220	N/A	N/A
13	Desulfovibrio desulfuricans subsp. desulfuricans str. G20	BProt DD	329	1	3,730,232	42.2	3,775	0.9	988	2,821	N/A
14	Desulfovibrio magneticus RS-1	BProt DD	32105	3	5,315,620	37.3	4,704	0.9	1,131	N/A	N/A
15	Desulfovibrio salexigens DSM 2638	BProt DD	29541	1	4,289,847	52.9	3,807	0.9	1,127	N/A	N/A
16	Desulfovibrio vulgaris DP4	BProt DD	17227	2	3,661,391	36.8	3,091	0.9	1,185	2,717	N/A
17	Desulfovibrio vulgaris str. 'Miyazaki F'	BProt DD	27731	1	4,040,304	32.9	3,180	0.8	1,271	N/A	N/A
18	Desulfovibrio vulgaris str. Hildenborough	BProt DD	51	2	3,773,159	36.7	3,531	0.9	1,071	2,689	N/A
19	Desulfurivibrio alkaliphilus AHT2	BProt DD	33629	1	3,097,763	39.7	2,620	0.9	1,182	N/A	N/A
20	Geobacter bemidjiensis Bem	BProt DD	17707	1	4,615,150	39.7	4,018	0.9	1,149	N/A	N/A
21	Geobacter lovleyi SZ	BProt DD	17423	2	3,994,874	45.3	3,685	0.9	1,084	N/A	N/A
22	Geobacter metallireducens GS-15	BProt DD	177	2	4,011,182	40.5	3,532	0.9	1,136	3,120	N/A
23	Geobacter sp. FRC-32	BProt DD	16263	1	4,304,501	46.5	3,798	0.9	1,133	N/A	N/A
24	Geobacter sp. M21	BProt DD	20729	1	4,745,806	39.5	4,080	0.9	1,163	N/A	N/A
25	Geobacter sulfurreducens KN400	BProt DD	39745	1	3,714,272	39.0	3,360	0.9	1,105	N/A	N/A
26	Geobacter sulfurreducens PCA	BProt DD	192	1	3,814,139	39.1	3,447	0.9	1,107	2,913	N/A
27	Geobacter uraniireducens Rf4	BProt DD	15768	1	5,136,364	45.8	4,357	0.9	1,179	3,648	N/A
28	Haliangium ochraceum DSM 14365	BProt DM	28711	1	9,446,314	30.5	6,719	0.9	1,406	N/A	N/A
29	Lawsonia intracellularis PHE/MN1-00	BProt DD	183	4	1,719,014	66.9	1,344	0.8	1,306	1,246	N/A
30	Myxococcus xanthus DK 1622	BProt DM	1421	1	9,139,763	31.1	7,331	0.9	1,247	6,263	N/A
31	Pelobacter carbinolicus DSM 2380	BProt DD	13337	1	3,665,893	44.9	3,353	0.9	1,093	2,759	N/A
32	Pelobacter propionicus DSM 2379	BProt DD	13384	3	4,241,119	41.5	3,804	0.9	1,115	3,209	N/A
33	Sorangium cellulosum 'So ce 56'	BProt DM	28111	1	13,033,779	28.6	9,384	0.9	1,389	N/A	N/A
34	Syntrophobacter fumaroxidans MPOB	BProt DS	13013	1	4,990,251	40.0	4,064	0.8	1,228	3,402	N/A
35	Syntrophus aciditrophicus SB	BProt DS	16258	1	3,179,300	48.5	3,168	0.9	1,004	2,402	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini