Genome Atlas - 3.0 (beta)

106 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	% Global Direct Repeats	% Global Inverted Repeats	% Local Direct Repeats	% Local Inverted Repeats	% Local Mirror Repeats	% Local Everted Repeats	% Simple Repeats

1	Actinosynnema mirum DSM 43827		19705	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
2	Catenulispora acidiphila DSM 44928		21085	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
3	Cryptobacterium curtum DSM 15641	BActin CC	20739	1	1,617,804	49.1	1.30	1.30	4.20	2.30	2.20	1.50	0.30
4	Mobiluncus curtisii ATCC 43063	BActin AA	31519	1	2,146,480	44.6	1.40	0.40	4.20	2.50	2.30	1.70	0.30
5	Tropheryma whipplei str. Twist	BActin AA	95	1	927,303	53.7	7.50	4.50	5.70	2.60	2.30	1.40	0.60
6	Tropheryma whipplei TW08/27	BActin AA	354	1	925,938	53.7	7.70	3.80	5.60	2.60	2.30	1.40	0.50
7	Corynebacterium kroppenstedtii DSM 44385	BActin AA	38011	1	2,446,804	42.5	1.00	0.20	5.00	2.70	2.50	1.90	0.40
8	Corynebacterium diphtheriae NCTC 13129	BActin AA	87	1	2,488,635	46.5	2.80	2.40	4.40	3.10	2.60	1.70	0.30
9	Mycobacterium leprae TN	BActin AA	90	1	3,268,203	42.2	2.60	2.80	3.60	3.10	2.60	2.20	0.20
10	Jonesia denitrificans DSM 20603	BActin AA	20833	1	2,749,646	41.6	2.50	1.30	6.00	3.10	3.60	1.80	0.00
11	Atopobium parvulum DSM 20469	BActin CC	29401	1	1,543,805	54.3	0.50	0.30	4.60	3.10	2.40	1.90	0.40
12	Mycobacterium leprae Br4923	BActin AA	31271	1	3,268,071	42.2	2.60	2.80	3.60	3.10	2.60	2.20	0.20
13	Propionibacterium acnes KPA171202	BActin AA	12460	1	2,560,265	40.0	1.00	1.10	4.60	3.20	2.80	2.10	0.30
14	Arcanobacterium haemolyticum DSM 20595	BActin AA	37925	1	1,986,154	46.9	2.80	3.40	5.20	3.20	2.80	1.50	0.40
15	Corynebacterium glutamicum R	BActin AA	19193	2	3,363,299	45.9	2.27	1.68	4.71	3.28	2.42	1.70	0.40
16	Corynebacterium glutamicum ATCC 13032	BActin AA	307	1	3,309,401	46.2	3.30	2.70	4.70	3.30	2.40	1.60	0.40
17	Corynebacterium glutamicum ATCC 13032	BActin AA	13760	1	3,282,708	46.2	3.10	2.80	4.70	3.30	2.40	1.60	0.40
18	Propionibacterium acnes SK137	BActin AA	31005	1	2,495,334	39.9	1.00	1.20	4.60	3.30	2.80	2.20	0.30
19	Renibacterium salmoninarum ATCC 33209	BActin AA	19227	1	3,155,250	43.7	4.10	3.70	3.60	3.40	2.40	1.90	0.20
20	Corynebacterium jeikeium K411	BActin AA	13967	2	2,476,822	38.6	6.00	5.18	7.68	3.60	3.79	2.80	0.70
21	Slackia heliotrinireducens DSM 20476	BActin CC	20831	1	3,165,038	39.8	3.10	1.60	7.70	3.90	3.70	2.80	0.60
22	Corynebacterium aurimucosum ATCC 700975	BActin AA	37279	2	2,819,226	39.4	3.99	3.56	6.19	3.90	3.39	2.61	0.50
23	Gardnerella vaginalis 409-05	BActin AB	31001	1	1,617,545	58.0	2.60	0.80	7.40	4.10	3.60	2.40	0.00
24	Rothia mucilaginosa	BActin AA	38547	1	2,264,603	40.4	2.70	0.50	9.20	4.10	3.80	2.30	0.00
25	Bifidobacterium dentium Bd1	BActin AB	17583	1	2,636,367	41.5	1.90	0.80	6.70	4.30	2.80	2.10	0.50
26	Arthrobacter aurescens TC1	BActin AA	12512	3	5,226,648	37.6	2.89	2.01	6.07	4.36	3.69	2.90	0.41
27	Bifidobacterium longum NCC2705	BActin AB	328	2	2,260,266	39.9	3.40	1.90	7.91	4.41	3.41	2.60	0.70
28	Bifidobacterium adolescentis ATCC 15703	BActin AB	16321	1	2,089,645	40.8	2.70	0.90	8.10	4.50	3.40	2.50	0.70
29	Bifidobacterium longum subsp. longum JDM301	BActin AB	47579	1	2,477,838	40.2	3.50	2.20	7.70	4.50	3.40	2.60	0.00
30	Bifidobacterium longum DJO10A	BActin AB	18773	3	2,389,526	39.8	4.05	2.68	8.03	4.51	3.41	2.60	0.70
31	Rhodococcus erythropolis PR4	BActin AA	20395	4	6,895,538	37.7	2.84	2.05	6.32	4.78	3.20	2.69	0.39
32	Bifidobacterium longum subsp. infantis ATCC 15697	BActin AB	17189	1	2,832,748	40.1	4.60	3.70	7.80	4.80	3.60	2.70	0.60
33	Mycobacterium abscessus ATCC 19977	BActin AA	15691	2	5,090,491	35.9	1.89	1.29	6.62	4.82	4.12	3.51	0.50
34	Bifidobacterium animalis subsp. lactis BB-12	BActin AB	42883	1	1,942,198	39.5	2.10	1.10	7.60	4.90	3.30	2.50	0.60
35	Bifidobacterium animalis subsp. lactis AD011	BActin AB	19423	1	1,933,695	39.5	1.00	2.40	7.60	5.10	3.30	2.50	0.60
36	Bifidobacterium animalis subsp. lactis V9	BActin AB	32515	1	1,944,050	39.5	2.10	1.20	7.60	5.10	3.30	2.50	0.60
37	Bifidobacterium animalis subsp. lactis DSM 10140	BActin AB	32893	1	1,938,483	39.5	2.00	0.70	7.60	5.10	3.30	2.50	0.60
38	Bifidobacterium animalis subsp. lactis Bl-04	BActin AB	32897	1	1,938,709	39.5	2.00	0.70	7.60	5.10	3.30	2.50	0.60
39	Corynebacterium urealyticum DSM 7109	BActin AA	29211	1	2,369,219	35.8	4.10	3.30	9.10	5.20	4.80	3.60	0.70
40	Corynebacterium efficiens YS-314	BActin AA	305	3	3,219,505	37.0	4.91	4.38	8.42	5.56	3.78	3.09	0.79
41	Arthrobacter sp. FB24	BActin AA	12640	4	5,070,478	34.6	2.40	1.93	8.17	5.75	5.09	4.35	0.60
42	Arthrobacter chlorophenolicus A6	BActin AA	20011	3	4,980,870	34.0	2.08	1.81	8.85	6.10	5.43	4.58	0.58
43	Mycobacterium ulcerans Agy99	BActin AA	16230	2	5,805,761	34.6	11.76	8.96	9.62	6.24	6.72	4.25	0.71
44	Eggerthella lenta DSM 2243	BActin CC	21093	1	3,632,260	35.8	3.60	2.80	11.30	6.70	6.20	5.00	0.80
45	Mycobacterium marinum M	BActin AA	16725	2	6,660,144	34.3	8.97	5.98	11.60	6.71	7.80	4.70	0.70
46	Mycobacterium bovis AF2122/97	BActin AA	89	1	4,345,492	34.4	6.10	3.50	10.60	6.80	6.90	4.80	0.70
47	Mycobacterium tuberculosis CDC1551	BActin AA	223	1	4,403,837	34.4	6.20	3.70	10.50	6.80	6.80	4.80	0.70
48	Mycobacterium tuberculosis H37Rv	BActin AA	224	1	4,411,532	34.4	6.70	4.00	10.50	6.80	6.80	4.90	0.70
49	Mycobacterium tuberculosis F11	BActin AA	15642	1	4,424,435	34.4	6.80	4.00	10.50	6.80	6.90	4.90	0.70
50	Mycobacterium bovis BCG str. Pasteur 1173P2	BActin AA	18059	1	4,374,522	34.4	9.00	3.50	10.60	6.80	6.90	4.90	0.70
51	Mycobacterium tuberculosis H37Ra	BActin AA	18883	1	4,419,977	34.4	6.70	4.00	10.50	6.80	6.80	4.90	0.70
52	Mycobacterium tuberculosis KZN 1435	BActin AA	21055	1	4,398,250	34.4	6.30	4.40	10.50	6.80	6.80	4.80	0.70
53	Mycobacterium bovis BCG str. Tokyo 172	BActin AA	31211	1	4,371,711	34.4	7.50	3.50	10.60	6.80	6.90	4.80	0.70
54	Acidothermus cellulolyticus 11B	BActin AA	16097	1	2,443,540	33.1	0.80	0.40	10.70	6.90	6.30	5.10	0.70
55	Segniliparus rotundus DSM 44985	BActin AA	37711	1	3,157,527	33.2	2.70	1.00	10.00	6.90	6.40	5.20	0.70
56	Thermobifida fusca YX	BActin AA	94	1	3,642,249	32.5	1.60	0.50	10.90	7.10	6.30	5.00	0.70
57	Saccharomonospora viridis DSM 43017	BActin AA	20835	1	4,308,349	32.7	1.60	0.90	10.20	7.20	5.50	4.50	0.80
58	Rhodococcus jostii RHA1	BActin AA	13693	4	9,702,737	33.0	6.26	4.96	10.13	7.37	5.43	4.47	0.66
59	Leifsonia xyli subsp. xyli str. CTCB07	BActin AA	212	1	2,584,158	32.3	4.50	5.00	11.20	7.70	6.90	5.70	0.80
60	Gordonia bronchialis DSM 43247	BActin AA	29549	2	5,290,012	33.0	4.14	4.43	11.07	7.77	5.40	4.48	0.70
61	Mycobacterium smegmatis str. MC2 155	BActin AA	92	1	6,988,209	32.6	5.60	3.20	10.80	7.90	6.10	5.40	0.80
62	Mycobacterium gilvum PYR-GCK	BActin AA	15760	4	5,982,829	32.3	6.41	3.47	11.58	8.15	6.33	5.49	0.88
63	Rhodococcus opacus B4	BActin AA	34839	6	8,834,939	32.4	5.22	4.37	11.03	8.19	5.78	4.99	0.02
64	Mycobacterium vanbaalenii PYR-1	BActin AA	15761	1	6,491,865	32.2	5.20	4.70	11.70	8.20	6.70	5.70	0.80
65	Stackebrandtia nassauensis DSM 44728	BActin AA	19713	1	6,841,557	31.9	2.80	1.40	14.40	8.20	7.60	6.40	0.00
66	Tsukamurella paurometabola DSM 20162	BActin AA	29399	2	4,479,724	31.6	3.19	3.08	11.61	8.32	6.64	5.53	0.80
67	Mycobacterium sp. KMS	BActin AA	16081	3	6,256,079	31.8	4.09	2.78	12.32	8.53	6.82	5.97	0.89
68	Mycobacterium sp. JLS	BActin AA	16079	1	6,048,425	31.6	3.90	2.90	12.40	8.60	6.90	6.00	0.90
69	Acidimicrobium ferrooxidans DSM 10331	BActin AA	29525	1	2,158,157	31.7	4.20	3.50	11.50	8.60	7.10	5.50	0.70
70	Mycobacterium sp. MCS	BActin AA	15762	2	5,920,523	31.6	3.33	2.47	12.50	8.64	6.90	6.07	0.90
71	Salinispora tropica CNB-440	BActin AA	16342	1	5,183,331	30.5	3.60	2.30	12.90	8.90	8.60	6.90	0.80
72	Salinispora arenicola CNS-205	BActin AA	17109	1	5,786,361	30.5	5.50	2.90	13.10	9.10	8.50	7.10	0.80
73	Mycobacterium avium 104	BActin AA	88	1	5,475,491	31.0	9.30	5.10	14.40	10.00	8.70	8.00	1.10
74	Rubrobacter xylanophilus DSM 9941	BActin RR	10670	1	3,225,748	29.5	3.50	2.40	16.70	10.00	12.20	9.70	1.30
75	Frankia sp. CcI3	BActin AA	13963	1	5,433,628	29.9	6.50	4.40	15.40	10.10	9.30	7.50	1.20
76	Streptomyces avermitilis MA-4680	BActin AA	189	2	9,119,895	29.3	5.16	3.28	16.77	10.18	10.28	7.98	1.30
77	Kytococcus sedentarius DSM 20547	BActin AA	21067	1	2,785,024	28.4	4.50	3.50	17.10	10.20	10.50	8.90	0.00
78	Mycobacterium avium subsp. paratuberculosis K-10	BActin AA	91	1	4,829,781	30.7	4.90	3.60	14.80	10.30	9.10	8.50	1.10
79	Streptomyces bingchenggensis BCW-1	BActin AA	46847	1	11,936,683	29.2	7.60	5.00	16.50	10.30	10.70	8.40	1.40
80	Kocuria rhizophila DC2201	BActin AA	27833	1	2,697,540	28.8	1.50	0.30	16.60	10.40	9.80	8.70	1.00
81	Kribbella flavida DSM 17836	BActin AA	21089	1	7,579,488	29.4	2.40	1.80	16.70	10.70	10.20	8.50	1.10
82	Streptomyces scabiei 87.22	BActin AA	40749	1	10,148,695	28.5	5.60	4.30	17.60	11.00	11.10	8.60	1.30
83	Streptosporangium roseum DSM 43021	BActin AA	21083	2	10,369,518	29.1	5.49	4.09	17.20	11.30	10.50	8.99	1.10
84	Nocardia farcinica IFM 10152	BActin AA	13117	3	6,292,344	29.3	4.08	2.30	17.24	11.34	10.16	8.64	1.19
85	Saccharopolyspora erythraea NRRL 2338	BActin AA	18489	1	8,212,805	28.9	5.40	4.10	16.80	11.70	10.70	9.40	1.00
86	Streptomyces coelicolor A3(2)	BActin AA	242	3	9,054,847	28.0	4.53	5.46	18.72	11.85	11.98	9.65	1.47
87	Nakamurella multipartita DSM 44233	BActin AA	29537	1	6,060,298	29.1	7.20	7.10	18.00	12.20	10.80	9.90	1.40
88	Streptomyces griseus subsp. griseus NBRC 13350	BActin AA	20085	1	8,545,929	27.8	4.00	5.70	19.30	12.30	12.20	9.70	1.30
89	Frankia sp. EAN1pec	BActin AA	13915	1	8,982,042	28.9	8.80	7.30	17.30	12.50	11.20	9.60	1.10
90	Thermomonospora curvata DSM 43183	BActin AA	20825	1	5,639,016	28.4	3.10	2.10	19.20	12.50	12.00	10.90	1.40
91	Amycolatopsis mediterranei U32	BActin AA	46889	1	10,236,715	28.7	4.70	3.30	17.80	12.50	11.30	9.90	1.10
92	Nocardioides sp. JS614	BActin AA	12738	2	5,293,685	28.6	3.17	2.60	17.09	12.57	10.54	9.93	1.36
93	Brachybacterium faecium DSM 4810	BActin AA	17026	1	3,614,992	28.0	1.80	1.30	19.90	12.70	11.80	9.90	0.00
94	Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111	BActin AA	19709	2	6,543,312	27.3	3.38	2.39	20.53	12.85	12.57	10.71	1.15
95	Sanguibacter keddieii DSM 10542	BActin AA	19711	1	4,253,413	28.1	2.20	1.60	20.20	13.20	10.90	8.80	1.40
96	Micrococcus luteus NCTC 2665	BActin AA	20655	1	2,501,097	27.0	3.30	4.30	20.50	13.70	12.80	11.30	1.40
97	Clavibacter michiganensis subsp. sepedonicus	BActin AA	184	3	3,403,786	27.6	4.77	4.56	21.83	13.94	13.22	10.39	1.57
98	Xylanimonas cellulosilytica DSM 15894	BActin AA	19715	2	3,831,380	27.5	2.84	2.10	21.26	14.34	12.26	10.27	1.56
99	Clavibacter michiganensis subsp. michiganensis NCPPB 382	BActin AA	19643	3	3,395,237	27.5	2.01	0.68	22.46	14.61	13.69	11.13	1.58
100	Thermobispora bispora DSM 43833	BActin AA	20737	1	4,189,976	27.6	2.00	1.40	20.80	14.70	12.90	12.20	0.00
101	Frankia alni ACN14a	BActin AA	17403	1	7,497,934	27.2	4.20	2.30	22.00	14.80	14.00	11.50	1.60
102	Geodermatophilus obscurus DSM 43160	BActin AA	29547	1	5,322,497	26.0	4.80	4.10	22.00	16.00	14.70	13.50	1.50
103	Beutenbergia cavernae DSM 12333	BActin AA	20827	1	4,669,183	26.9	1.90	1.20	21.20	16.30	12.90	11.20	0.00
104	Kineococcus radiotolerans SRS30216	BActin AA	10689	3	4,956,672	25.8	3.25	2.03	24.23	16.79	15.55	13.33	2.11
105	Cellulomonas flavigena DSM 20109	BActin AA	19707	1	4,123,179	25.7	3.30	1.60	24.50	18.30	16.50	14.00	1.70
106	Conexibacter woesei DSM 14684	BActin RS	20745	1	6,359,369	27.3	4.00	3.10	25.30	19.30	17.90	16.10	1.80

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini