Genome Atlas - 3.0 (beta)

106 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	Number of genes	5S rRNA count	16S rRNA count	23S rRNA count	tRNA count	% AT

1	Gardnerella vaginalis 409-05	BActin AB	31001	1	1,617,545	1,258	2	2	2	45	58.0
2	Atopobium parvulum DSM 20469	BActin CC	29401	1	1,543,805	1,353	1	1	1	45	54.3
3	Tropheryma whipplei TW08/27	BActin AA	354	1	925,938	784	1	1	1	51	53.7
4	Tropheryma whipplei str. Twist	BActin AA	95	1	927,303	808	1	1	1	50	53.7
5	Cryptobacterium curtum DSM 15641	BActin CC	20739	1	1,617,804	1,357	3	3	3	47	49.1
6	Arcanobacterium haemolyticum DSM 20595	BActin AA	37925	1	1,986,154	1,731	4	4	4	50	46.9
7	Corynebacterium diphtheriae NCTC 13129	BActin AA	87	1	2,488,635	2,320	5	5	5	54	46.5
8	Corynebacterium glutamicum ATCC 13032	BActin AA	307	1	3,309,401	3,099	6	6	6	60	46.2
9	Corynebacterium glutamicum ATCC 13032	BActin AA	13760	1	3,282,708	3,058	6	6	6	60	46.2
10	Corynebacterium glutamicum R	BActin AA	19193	2	3,363,299	3,080	6	6	6	58	45.9
11	Mobiluncus curtisii ATCC 43063	BActin AA	31519	1	2,146,480	1,909	2	2	2	46	44.6
12	Renibacterium salmoninarum ATCC 33209	BActin AA	19227	1	3,155,250	3,507	2	2	2	45	43.7
13	Corynebacterium kroppenstedtii DSM 44385	BActin AA	38011	1	2,446,804	2,018	3	3	3	46	42.5
14	Mycobacterium leprae TN	BActin AA	90	1	3,268,203	2,720	1	1	1	45	42.2
15	Mycobacterium leprae Br4923	BActin AA	31271	1	3,268,071	2,720	1	1	1	45	42.2
16	Jonesia denitrificans DSM 20603	BActin AA	20833	1	2,749,646	2,511	6	5	5	55	41.6
17	Bifidobacterium dentium Bd1	BActin AB	17583	1	2,636,367	2,129	5	4	4	56	41.5
18	Bifidobacterium adolescentis ATCC 15703	BActin AB	16321	1	2,089,645	1,631	6	5	5	54	40.8
19	Rothia mucilaginosa	BActin AA	38547	1	2,264,603	1,992	4	3	3	49	40.4
20	Bifidobacterium longum subsp. longum JDM301	BActin AB	47579	1	2,477,838	1,959	3	3	3	55	40.2
21	Bifidobacterium longum subsp. infantis ATCC 15697	BActin AB	17189	1	2,832,748	2,416	4	4	4	79	40.1
22	Propionibacterium acnes KPA171202	BActin AA	12460	1	2,560,265	2,297	3	3	3	45	40.0
23	Propionibacterium acnes SK137	BActin AA	31005	1	2,495,334	2,352	3	3	3	45	39.9
24	Bifidobacterium longum NCC2705	BActin AB	328	2	2,260,266	1,729	4	4	4	57	39.9
25	Bifidobacterium longum DJO10A	BActin AB	18773	3	2,389,526	2,003	4	4	4	58	39.8
26	Slackia heliotrinireducens DSM 20476	BActin CC	20831	1	3,165,038	2,765	2	2	2	48	39.8
27	Bifidobacterium animalis subsp. lactis DSM 10140	BActin AB	32893	1	1,938,483	1,566	4	4	4	51	39.5
28	Bifidobacterium animalis subsp. lactis Bl-04	BActin AB	32897	1	1,938,709	1,567	4	4	4	52	39.5
29	Bifidobacterium animalis subsp. lactis BB-12	BActin AB	42883	1	1,942,198	1,642	4	4	4	52	39.5
30	Bifidobacterium animalis subsp. lactis AD011	BActin AB	19423	1	1,933,695	1,528	3	2	2	52	39.5
31	Bifidobacterium animalis subsp. lactis V9	BActin AB	32515	1	1,944,050	1,572	4	4	4	52	39.5
32	Corynebacterium aurimucosum ATCC 700975	BActin AA	37279	2	2,819,226	2,559	4	4	4	55	39.4
33	Corynebacterium jeikeium K411	BActin AA	13967	2	2,476,822	2,120	3	3	3	50	38.6
34	Rhodococcus erythropolis PR4	BActin AA	20395	4	6,895,538	6,437	5	5	5	54	37.7
35	Arthrobacter aurescens TC1	BActin AA	12512	3	5,226,648	4,587	6	6	6	54	37.6
36	Corynebacterium efficiens YS-314	BActin AA	305	3	3,219,505	2,998	5	5	5	56	37.0
37	Mycobacterium abscessus ATCC 19977	BActin AA	15691	2	5,090,491	4,941	1	1	1	47	35.9
38	Corynebacterium urealyticum DSM 7109	BActin AA	29211	1	2,369,219	2,024	3	3	3	51	35.8
39	Eggerthella lenta DSM 2243	BActin CC	21093	1	3,632,260	3,070	3	3	3	48	35.8
40	Mycobacterium ulcerans Agy99	BActin AA	16230	2	5,805,761	4,241	1	1	1	45	34.6
41	Arthrobacter sp. FB24	BActin AA	12640	4	5,070,478	4,506	5	5	5	51	34.6
42	Mycobacterium tuberculosis CDC1551	BActin AA	223	1	4,403,837	4,189	1	1	1	45	34.4
43	Mycobacterium tuberculosis H37Rv	BActin AA	224	1	4,411,532	3,999	1	1	1	45	34.4
44	Mycobacterium tuberculosis H37Ra	BActin AA	18883	1	4,419,977	4,034	1	1	1	45	34.4
45	Mycobacterium tuberculosis KZN 1435	BActin AA	21055	1	4,398,250	4,060	1	1	1	45	34.4
46	Mycobacterium tuberculosis F11	BActin AA	15642	1	4,424,435	3,950	1	1	1	45	34.4
47	Mycobacterium bovis AF2122/97	BActin AA	89	1	4,345,492	3,953	1	1	1	45	34.4
48	Mycobacterium bovis BCG str. Pasteur 1173P2	BActin AA	18059	1	4,374,522	3,988	1	1	1	47	34.4
49	Mycobacterium bovis BCG str. Tokyo 172	BActin AA	31211	1	4,371,711	3,984	1	1	1	45	34.4
50	Mycobacterium marinum M	BActin AA	16725	2	6,660,144	5,452	1	1	1	46	34.3
51	Arthrobacter chlorophenolicus A6	BActin AA	20011	3	4,980,870	4,590	5	5	5	88	34.0
52	Segniliparus rotundus DSM 44985	BActin AA	37711	1	3,157,527	3,006	1	1	1	47	33.2
53	Acidothermus cellulolyticus 11B	BActin AA	16097	1	2,443,540	2,157	1	1	1	46	33.1
54	Rhodococcus jostii RHA1	BActin AA	13693	4	9,702,737	9,145	4	4	4	52	33.0
55	Gordonia bronchialis DSM 43247	BActin AA	29549	2	5,290,012	4,696	2	2	2	49	33.0
56	Saccharomonospora viridis DSM 43017	BActin AA	20835	1	4,308,349	3,828	3	3	3	47	32.7
57	Mycobacterium smegmatis str. MC2 155	BActin AA	92	1	6,988,209	6,716	2	2	2	47	32.6
58	Thermobifida fusca YX	BActin AA	94	1	3,642,249	3,110	4	4	4	52	32.5
59	Rhodococcus opacus B4	BActin AA	34839	6	8,834,939	8,203	4	4	4	49	32.4
60	Leifsonia xyli subsp. xyli str. CTCB07	BActin AA	212	1	2,584,158	2,030	1	1	1	45	32.3
61	Mycobacterium gilvum PYR-GCK	BActin AA	15760	4	5,982,829	5,579	2	2	2	47	32.3
62	Mycobacterium vanbaalenii PYR-1	BActin AA	15761	1	6,491,865	5,979	2	2	2	49	32.2
63	Stackebrandtia nassauensis DSM 44728	BActin AA	19713	1	6,841,557	6,379	2	2	2	47	31.9
64	Mycobacterium sp. KMS	BActin AA	16081	3	6,256,079	5,975	2	2	2	48	31.8
65	Acidimicrobium ferrooxidans DSM 10331	BActin AA	29525	1	2,158,157	1,964	2	2	2	46	31.7
66	Mycobacterium sp. JLS	BActin AA	16079	1	6,048,425	5,739	2	2	2	48	31.6
67	Mycobacterium sp. MCS	BActin AA	15762	2	5,920,523	5,615	2	2	2	48	31.6
68	Tsukamurella paurometabola DSM 20162	BActin AA	29399	2	4,479,724	4,242	2	2	2	48	31.6
69	Mycobacterium avium 104	BActin AA	88	1	5,475,491	5,120	1	1	1	46	31.0
70	Mycobacterium avium subsp. paratuberculosis K-10	BActin AA	91	1	4,829,781	4,350	1	1	1	46	30.7
71	Salinispora tropica CNB-440	BActin AA	16342	1	5,183,331	4,536	3	3	3	50	30.5
72	Salinispora arenicola CNS-205	BActin AA	17109	1	5,786,361	4,917	3	3	3	52	30.5
73	Frankia sp. CcI3	BActin AA	13963	1	5,433,628	4,499	2	2	2	46	29.9
74	Rubrobacter xylanophilus DSM 9941	BActin RR	10670	1	3,225,748	3,140	1	1	1	46	29.5
75	Kribbella flavida DSM 17836	BActin AA	21089	1	7,579,488	6,943	2	2	2	54	29.4
76	Nocardia farcinica IFM 10152	BActin AA	13117	3	6,292,344	5,936	3	3	3	54	29.3
77	Streptomyces avermitilis MA-4680	BActin AA	189	2	9,119,895	7,673	6	6	6	68	29.3
78	Streptomyces bingchenggensis BCW-1	BActin AA	46847	1	11,936,683	10,022	6	6	6	64	29.2
79	Streptosporangium roseum DSM 43021	BActin AA	21083	2	10,369,518	8,975	6	6	6	62	29.1
80	Nakamurella multipartita DSM 44233	BActin AA	29537	1	6,060,298	5,240	2	2	2	47	29.1
81	Frankia sp. EAN1pec	BActin AA	13915	1	8,982,042	7,191	3	3	3	47	28.9
82	Saccharopolyspora erythraea NRRL 2338	BActin AA	18489	1	8,212,805	7,198	4	4	4	50	28.9
83	Kocuria rhizophila DC2201	BActin AA	27833	1	2,697,540	2,357	3	3	3	46	28.8
84	Amycolatopsis mediterranei U32	BActin AA	46889	1	10,236,715	9,228	4	4	4	52	28.7
85	Nocardioides sp. JS614	BActin AA	12738	2	5,293,685	4,909	2	2	2	46	28.6
86	Streptomyces scabiei 87.22	BActin AA	40749	1	10,148,695	8,809	6	6	6	74	28.5
87	Kytococcus sedentarius DSM 20547	BActin AA	21067	1	2,785,024	2,554	2	2	2	47	28.4
88	Thermomonospora curvata DSM 43183	BActin AA	20825	1	5,639,016	4,890	4	4	4	61	28.4
89	Sanguibacter keddieii DSM 10542	BActin AA	19711	1	4,253,413	3,710	4	4	4	51	28.1
90	Streptomyces coelicolor A3(2)	BActin AA	242	3	9,054,847	8,215	6	6	6	65	28.0
91	Brachybacterium faecium DSM 4810	BActin AA	17026	1	3,614,992	3,068	3	3	3	50	28.0
92	Streptomyces griseus subsp. griseus NBRC 13350	BActin AA	20085	1	8,545,929	7,138	6	6	6	66	27.8
93	Clavibacter michiganensis subsp. sepedonicus	BActin AA	184	3	3,403,786	3,237	2	2	2	45	27.6
94	Thermobispora bispora DSM 43833	BActin AA	20737	1	4,189,976	3,546	3	4	3	53	27.6
95	Xylanimonas cellulosilytica DSM 15894	BActin AA	19715	2	3,831,380	3,443	3	3	3	52	27.5
96	Clavibacter michiganensis subsp. michiganensis NCPPB 382	BActin AA	19643	3	3,395,237	3,108	2	2	2	45	27.5
97	Conexibacter woesei DSM 14684	BActin RS	20745	1	6,359,369	5,914	1	1	1	45	27.3
98	Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111	BActin AA	19709	2	6,543,312	5,497	5	5	5	60	27.3
99	Frankia alni ACN14a	BActin AA	17403	1	7,497,934	6,723	2	2	2	46	27.2
100	Micrococcus luteus NCTC 2665	BActin AA	20655	1	2,501,097	2,236	2	2	2	48	27.0
101	Beutenbergia cavernae DSM 12333	BActin AA	20827	1	4,669,183	4,197	2	2	2	45	26.9
102	Geodermatophilus obscurus DSM 43160	BActin AA	29547	1	5,322,497	4,811	3	3	3	48	26.0
103	Kineococcus radiotolerans SRS30216	BActin AA	10689	3	4,956,672	4,681	4	4	4	49	25.8
104	Cellulomonas flavigena DSM 20109	BActin AA	19707	1	4,123,179	3,678	2	2	2	45	25.7
105	Actinosynnema mirum DSM 43827		19705	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A
106	Catenulispora acidiphila DSM 44928		21085	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini