Genome Atlas - 3.0 (beta)

106 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	Sigma 54 Factors	Sigma 70 Factors	ECF Factors

1	Corynebacterium diphtheriae NCTC 13129	BActin AA	87	1	2,488,635	46.5	N/A	2	7
2	Mycobacterium avium 104	BActin AA	88	1	5,475,491	31.0	N/A	4	15
3	Mycobacterium bovis AF2122/97	BActin AA	89	1	4,345,492	34.4	N/A	3	N/A
4	Mycobacterium leprae TN	BActin AA	90	1	3,268,203	42.2	N/A	2	2
5	Mycobacterium avium subsp. paratuberculosis K-10	BActin AA	91	1	4,829,781	30.7	N/A	4	15
6	Mycobacterium smegmatis str. MC2 155	BActin AA	92	1	6,988,209	32.6	N/A	3	22
7	Thermobifida fusca YX	BActin AA	94	1	3,642,249	32.5	N/A	6	11
8	Tropheryma whipplei str. Twist	BActin AA	95	1	927,303	53.7	N/A	1	N/A
9	Clavibacter michiganensis subsp. sepedonicus	BActin AA	184	3	3,403,786	27.6	N/A	3	6
10	Streptomyces avermitilis MA-4680	BActin AA	189	2	9,119,895	29.3	N/A	13	45
11	Leifsonia xyli subsp. xyli str. CTCB07	BActin AA	212	1	2,584,158	32.3	N/A	3	3
12	Mycobacterium tuberculosis CDC1551	BActin AA	223	1	4,403,837	34.4	N/A	3	9
13	Mycobacterium tuberculosis H37Rv	BActin AA	224	1	4,411,532	34.4	N/A	3	N/A
14	Streptomyces coelicolor A3(2)	BActin AA	242	3	9,054,847	28.0	N/A	14	47
15	Corynebacterium efficiens YS-314	BActin AA	305	3	3,219,505	37.0	N/A	2	5
16	Corynebacterium glutamicum ATCC 13032	BActin AA	307	1	3,309,401	46.2	N/A	2	5
17	Bifidobacterium longum NCC2705	BActin AB	328	2	2,260,266	39.9	N/A	1	1
18	Tropheryma whipplei TW08/27	BActin AA	354	1	925,938	53.7	N/A	1	N/A
19	Rubrobacter xylanophilus DSM 9941	BActin RR	10670	1	3,225,748	29.5	N/A	N/A	6
20	Kineococcus radiotolerans SRS30216	BActin AA	10689	3	4,956,672	25.8	N/A	5	28
21	Propionibacterium acnes KPA171202	BActin AA	12460	1	2,560,265	40.0	N/A	2	2
22	Arthrobacter aurescens TC1	BActin AA	12512	3	5,226,648	37.6	N/A	2	17
23	Arthrobacter sp. FB24	BActin AA	12640	4	5,070,478	34.6	N/A	2	10
24	Nocardioides sp. JS614	BActin AA	12738	2	5,293,685	28.6	N/A	11	22
25	Nocardia farcinica IFM 10152	BActin AA	13117	3	6,292,344	29.3	N/A	7	24
26	Rhodococcus jostii RHA1	BActin AA	13693	4	9,702,737	33.0	N/A	6	24
27	Corynebacterium glutamicum ATCC 13032	BActin AA	13760	1	3,282,708	46.2	N/A	2	5
28	Frankia sp. EAN1pec	BActin AA	13915	1	8,982,042	28.9	N/A	4	26
29	Frankia sp. CcI3	BActin AA	13963	1	5,433,628	29.9	N/A	3	12
30	Corynebacterium jeikeium K411	BActin AA	13967	2	2,476,822	38.6	N/A	2	7
31	Mycobacterium tuberculosis F11	BActin AA	15642	1	4,424,435	34.4	N/A	3	N/A
32	Mycobacterium abscessus ATCC 19977	BActin AA	15691	2	5,090,491	35.9	N/A	3	16
33	Mycobacterium gilvum PYR-GCK	BActin AA	15760	4	5,982,829	32.3	N/A	6	13
34	Mycobacterium vanbaalenii PYR-1	BActin AA	15761	1	6,491,865	32.2	N/A	4	21
35	Mycobacterium sp. MCS	BActin AA	15762	2	5,920,523	31.6	N/A	5	15
36	Mycobacterium sp. JLS	BActin AA	16079	1	6,048,425	31.6	N/A	5	15
37	Mycobacterium sp. KMS	BActin AA	16081	3	6,256,079	31.8	N/A	5	15
38	Acidothermus cellulolyticus 11B	BActin AA	16097	1	2,443,540	33.1	N/A	5	11
39	Mycobacterium ulcerans Agy99	BActin AA	16230	2	5,805,761	34.6	N/A	3	11
40	Bifidobacterium adolescentis ATCC 15703	BActin AB	16321	1	2,089,645	40.8	N/A	1	1
41	Salinispora tropica CNB-440	BActin AA	16342	1	5,183,331	30.5	N/A	4	19
42	Mycobacterium marinum M	BActin AA	16725	2	6,660,144	34.3	N/A	3	15
43	Brachybacterium faecium DSM 4810	BActin AA	17026	1	3,614,992	28.0	N/A	1	3
44	Salinispora arenicola CNS-205	BActin AA	17109	1	5,786,361	30.5	N/A	4	19
45	Bifidobacterium longum subsp. infantis ATCC 15697	BActin AB	17189	1	2,832,748	40.1	N/A	1	2
46	Frankia alni ACN14a	BActin AA	17403	1	7,497,934	27.2	N/A	3	19
47	Bifidobacterium dentium Bd1	BActin AB	17583	1	2,636,367	41.5	N/A	1	1
48	Mycobacterium bovis BCG str. Pasteur 1173P2	BActin AA	18059	1	4,374,522	34.4	N/A	3	12
49	Saccharopolyspora erythraea NRRL 2338	BActin AA	18489	1	8,212,805	28.9	N/A	5	N/A
50	Bifidobacterium longum DJO10A	BActin AB	18773	3	2,389,526	39.8	N/A	1	1
51	Mycobacterium tuberculosis H37Ra	BActin AA	18883	1	4,419,977	34.4	N/A	3	N/A
52	Corynebacterium glutamicum R	BActin AA	19193	2	3,363,299	45.9	N/A	2	4
53	Renibacterium salmoninarum ATCC 33209	BActin AA	19227	1	3,155,250	43.7	N/A	1	7
54	Bifidobacterium animalis subsp. lactis AD011	BActin AB	19423	1	1,933,695	39.5	N/A	1	1
55	Clavibacter michiganensis subsp. michiganensis NCPPB 382	BActin AA	19643	3	3,395,237	27.5	N/A	3	6
56	Actinosynnema mirum DSM 43827		19705	1	N/A	N/A	N/A	N/A	N/A
57	Cellulomonas flavigena DSM 20109	BActin AA	19707	1	4,123,179	25.7	N/A	2	23
58	Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111	BActin AA	19709	2	6,543,312	27.3	N/A	8	26
59	Sanguibacter keddieii DSM 10542	BActin AA	19711	1	4,253,413	28.1	N/A	4	16
60	Stackebrandtia nassauensis DSM 44728	BActin AA	19713	1	6,841,557	31.9	N/A	4	53
61	Xylanimonas cellulosilytica DSM 15894	BActin AA	19715	2	3,831,380	27.5	N/A	1	16
62	Arthrobacter chlorophenolicus A6	BActin AA	20011	3	4,980,870	34.0	N/A	3	9
63	Streptomyces griseus subsp. griseus NBRC 13350	BActin AA	20085	1	8,545,929	27.8	N/A	13	34
64	Rhodococcus erythropolis PR4	BActin AA	20395	4	6,895,538	37.7	N/A	4	14
65	Micrococcus luteus NCTC 2665	BActin AA	20655	1	2,501,097	27.0	N/A	1	1
66	Thermobispora bispora DSM 43833	BActin AA	20737	1	4,189,976	27.6	N/A	5	14
67	Cryptobacterium curtum DSM 15641	BActin CC	20739	1	1,617,804	49.1	N/A	1	N/A
68	Conexibacter woesei DSM 14684	BActin RS	20745	1	6,359,369	27.3	N/A	13	44
69	Thermomonospora curvata DSM 43183	BActin AA	20825	1	5,639,016	28.4	N/A	5	26
70	Beutenbergia cavernae DSM 12333	BActin AA	20827	1	4,669,183	26.9	N/A	1	33
71	Slackia heliotrinireducens DSM 20476	BActin CC	20831	1	3,165,038	39.8	N/A	3	5
72	Jonesia denitrificans DSM 20603	BActin AA	20833	1	2,749,646	41.6	N/A	3	4
73	Saccharomonospora viridis DSM 43017	BActin AA	20835	1	4,308,349	32.7	N/A	6	12
74	Mycobacterium tuberculosis KZN 1435	BActin AA	21055	1	4,398,250	34.4	N/A	3	9
75	Kytococcus sedentarius DSM 20547	BActin AA	21067	1	2,785,024	28.4	N/A	2	4
76	Streptosporangium roseum DSM 43021	BActin AA	21083	2	10,369,518	29.1	N/A	8	74
77	Catenulispora acidiphila DSM 44928		21085	1	N/A	N/A	N/A	N/A	N/A
78	Kribbella flavida DSM 17836	BActin AA	21089	1	7,579,488	29.4	N/A	8	92
79	Eggerthella lenta DSM 2243	BActin CC	21093	1	3,632,260	35.8	1	1	12
80	Kocuria rhizophila DC2201	BActin AA	27833	1	2,697,540	28.8	N/A	1	2
81	Corynebacterium urealyticum DSM 7109	BActin AA	29211	1	2,369,219	35.8	N/A	2	4
82	Tsukamurella paurometabola DSM 20162	BActin AA	29399	2	4,479,724	31.6	N/A	2	15
83	Atopobium parvulum DSM 20469	BActin CC	29401	1	1,543,805	54.3	N/A	2	N/A
84	Acidimicrobium ferrooxidans DSM 10331	BActin AA	29525	1	2,158,157	31.7	N/A	4	5
85	Nakamurella multipartita DSM 44233	BActin AA	29537	1	6,060,298	29.1	N/A	3	23
86	Geodermatophilus obscurus DSM 43160	BActin AA	29547	1	5,322,497	26.0	N/A	5	17
87	Gordonia bronchialis DSM 43247	BActin AA	29549	2	5,290,012	33.0	N/A	3	13
88	Gardnerella vaginalis 409-05	BActin AB	31001	1	1,617,545	58.0	N/A	1	1
89	Propionibacterium acnes SK137	BActin AA	31005	1	2,495,334	39.9	N/A	2	2
90	Mycobacterium bovis BCG str. Tokyo 172	BActin AA	31211	1	4,371,711	34.4	N/A	3	N/A
91	Mycobacterium leprae Br4923	BActin AA	31271	1	3,268,071	42.2	N/A	2	2
92	Mobiluncus curtisii ATCC 43063	BActin AA	31519	1	2,146,480	44.6	N/A	2	2
93	Bifidobacterium animalis subsp. lactis V9	BActin AB	32515	1	1,944,050	39.5	N/A	1	1
94	Bifidobacterium animalis subsp. lactis DSM 10140	BActin AB	32893	1	1,938,483	39.5	N/A	1	1
95	Bifidobacterium animalis subsp. lactis Bl-04	BActin AB	32897	1	1,938,709	39.5	N/A	1	1
96	Rhodococcus opacus B4	BActin AA	34839	6	8,834,939	32.4	N/A	5	25
97	Corynebacterium aurimucosum ATCC 700975	BActin AA	37279	2	2,819,226	39.4	N/A	2	7
98	Segniliparus rotundus DSM 44985	BActin AA	37711	1	3,157,527	33.2	N/A	2	7
99	Arcanobacterium haemolyticum DSM 20595	BActin AA	37925	1	1,986,154	46.9	N/A	1	1
100	Corynebacterium kroppenstedtii DSM 44385	BActin AA	38011	1	2,446,804	42.5	N/A	2	5
101	Rothia mucilaginosa	BActin AA	38547	1	2,264,603	40.4	N/A	1	1
102	Streptomyces scabiei 87.22	BActin AA	40749	1	10,148,695	28.5	N/A	13	N/A
103	Bifidobacterium animalis subsp. lactis BB-12	BActin AB	42883	1	1,942,198	39.5	N/A	1	1
104	Streptomyces bingchenggensis BCW-1	BActin AA	46847	1	11,936,683	29.2	N/A	11	56
105	Amycolatopsis mediterranei U32	BActin AA	46889	1	10,236,715	28.7	N/A	6	82
106	Bifidobacterium longum subsp. longum JDM301	BActin AB	47579	1	2,477,838	40.2	N/A	1	1

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini