Genome Atlas - 3.0 (beta)

41 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	Number of genes	5S rRNA count	16S rRNA count	23S rRNA count	tRNA count	% AT

1	Spirosoma linguale DSM 74	BBSS	28817	9	8,491,258	6,938	3	4	4	49	49.9
2	Flavobacterium johnsoniae UW101	BBFF	16082	1	6,096,872	5,017	6	6	6	62	65.9
3	Bacteroides thetaiotaomicron VPI-5482	BBBB	399	2	6,293,399	4,816	5	5	5	71	57.1
4	Zunongwangia profunda SM-A87	BBFF	38641	1	5,128,187	4,653	3	3	3	48	63.8
5	Bacteroides fragilis YCH46	BBBB	13067	2	5,310,990	4,625	6	6	6	74	56.8
6	Bacteroides fragilis NCTC 9343	BBBB	46	2	5,241,700	4,308	7	6	6	73	56.9
7	Pedobacter heparinus DSM 2366	BBSS	27949	1	5,167,383	4,252	3	3	3	45	58.0
8	Bacteroides vulgatus ATCC 8482	BBBB	13378	1	5,163,189	4,065	8	7	7	85	57.8
9	Parabacteroides distasonis ATCC 8503	BBBB	13485	1	4,811,379	3,850	7	7	7	83	54.9
10	Cytophaga hutchinsonii ATCC 33406	BBSS	54	1	4,433,218	3,785	3	3	3	39	61.2
11	Gramella forsetii KT0803	BBFF	19061	1	3,798,465	3,584	3	3	3	44	63.4
12	Robiginitalea biformata HTCC2501	BBFF	13461	1	3,530,383	3,211	2	2	2	41	44.7
13	Rhodothermus marinus DSM 4252	BBSS	29281	2	3,386,737	2,863	1	1	1	45	35.7
14	Salinibacter ruber DSM 13855	BBSS	16159	2	3,587,328	2,833	1	1	1	44	33.9
15	Prevotella ruminicola 23	BBBB	10619	1	3,619,559	2,763	4	4	4	55	52.3
16	Chloroherpeton thalassium ATCC 35110	BCCC	29215	1	3,293,456	2,710	1	1	1	44	55.0
17	Pelodictyon phaeoclathratiforme BU-1	BCCC	13011	1	3,018,238	2,707	3	3	3	49	51.9
18	Croceibacter atlanticus HTCC2559	BBFF	13570	1	2,952,962	2,702	2	2	2	36	66.1
19	Chlorobium phaeobacteroides DSM 266	BCCC	12609	1	3,133,902	2,650	2	2	2	47	51.6
20	Flavobacteriaceae bacterium 3519-10	BBFF	38559	1	2,768,102	2,534	2	2	2	42	57.3
21	Chlorobium phaeobacteroides BS1	BCCC	12608	1	2,736,403	2,469	2	2	2	46	51.1
22	Chlorobium limicola DSM 245	BCCC	12606	1	2,763,181	2,434	2	2	2	48	48.7
23	Flavobacterium psychrophilum JIP02/86	BBFF	19979	1	2,861,988	2,432	6	6	6	49	67.5
24	Prosthecochloris aestuarii DSM 271	BCCC	12749	2	2,579,695	2,327	1	1	1	46	49.9
25	Chlorobium tepidum TLS	BCCC	302	1	2,154,946	2,255	2	2	2	50	43.5
26	Capnocytophaga ochracea DSM 7271	BBFF	29403	1	2,612,925	2,171	4	4	4	47	60.4
27	Porphyromonas gingivalis ATCC 33277	BBBB	19051	1	2,354,886	2,090	4	4	4	53	51.6
28	Chlorobium luteolum DSM 273	BCCC	13012	1	2,364,842	2,083	2	2	2	48	42.7
29	Chlorobaculum parvum NCIB 8327	BCCC	29213	1	2,289,249	2,043	2	2	2	49	44.2
30	Chlorobium chlorochromatii CaD3	BCCC	13921	1	2,572,079	2,002	1	1	1	45	55.7
31	Porphyromonas gingivalis W83	BBBB	48	1	2,343,476	1,909	4	4	4	53	51.7
32	Chlorobium phaeovibrioides DSM 265	BCCC	12607	1	1,966,858	1,753	1	1	1	45	47.0
33	Candidatus Amoebophilus asiaticus 5a2	BBC	19981	1	1,884,364	1,283	1	1	1	35	65.0
34	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2	BBBB	29025	5	1,224,919	852	1	2	1	38	67.1
35	Blattabacterium sp. (Blattella germanica) str. Bge	BBFF	31103	1	636,850	587	1	1	1	34	72.9
36	Blattabacterium sp. (Periplaneta americana) str. BPLAN	BBFF	32975	2	640,442	581	1	1	1	33	71.8
37	Candidatus Sulcia muelleri SMDSEM	BBFF	33829	1	276,984	242	1	1	1	28	77.4
38	Candidatus Sulcia muelleri GWSS	BBFF	19617	1	245,530	227	1	1	1	31	77.6
39	Candidatus Sulcia muelleri DMIN	BBFF	37785	1	243,933	226	1	1	1	31	77.5
40	Dyadobacter fermentans DSM 18053		20829	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A
41	Chitinophaga pinensis DSM 2588		27951	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini