Genome Atlas - 3.0 (beta)

41 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	Number of genes	Coding density	Bp/gene	Estimated # proteins	True proteins ratio

1	Porphyromonas gingivalis W83	BBBB	48	1	2,343,476	51.7	1,909	0.8	1,228	1,587	N/A
2	Cytophaga hutchinsonii ATCC 33406	BBSS	54	1	4,433,218	61.2	3,785	0.9	1,171	3,087	N/A
3	Chlorobium tepidum TLS	BCCC	302	1	2,154,946	43.5	2,255	0.9	956	1,672	N/A
4	Prevotella ruminicola 23	BBBB	10619	1	3,619,559	52.3	2,763	0.9	1,310	N/A	N/A
5	Chlorobium limicola DSM 245	BCCC	12606	1	2,763,181	48.7	2,434	0.9	1,135	N/A	N/A
6	Chlorobium phaeovibrioides DSM 265	BCCC	12607	1	1,966,858	47.0	1,753	0.9	1,122	1,579	N/A
7	Chlorobium phaeobacteroides BS1	BCCC	12608	1	2,736,403	51.1	2,469	0.8	1,108	N/A	N/A
8	Chlorobium phaeobacteroides DSM 266	BCCC	12609	1	3,133,902	51.6	2,650	0.8	1,183	2,165	N/A
9	Pelodictyon phaeoclathratiforme BU-1	BCCC	13011	1	3,018,238	51.9	2,707	0.9	1,115	N/A	N/A
10	Chlorobium luteolum DSM 273	BCCC	13012	1	2,364,842	42.7	2,083	0.9	1,135	1,821	N/A
11	Bacteroides vulgatus ATCC 8482	BBBB	13378	1	5,163,189	57.8	4,065	0.9	1,270	3,478	N/A
12	Robiginitalea biformata HTCC2501	BBFF	13461	1	3,530,383	44.7	3,211	0.9	1,100	N/A	N/A
13	Parabacteroides distasonis ATCC 8503	BBBB	13485	1	4,811,379	54.9	3,850	0.9	1,250	3,439	N/A
14	Croceibacter atlanticus HTCC2559	BBFF	13570	1	2,952,962	66.1	2,702	0.9	1,093	N/A	N/A
15	Chlorobium chlorochromatii CaD3	BCCC	13921	1	2,572,079	55.7	2,002	0.9	1,285	1,683	N/A
16	Flavobacterium johnsoniae UW101	BBFF	16082	1	6,096,872	65.9	5,017	0.9	1,215	4,140	N/A
17	Porphyromonas gingivalis ATCC 33277	BBBB	19051	1	2,354,886	51.6	2,090	0.9	1,127	N/A	N/A
18	Gramella forsetii KT0803	BBFF	19061	1	3,798,465	63.4	3,584	0.9	1,060	2,833	N/A
19	Candidatus Sulcia muelleri GWSS	BBFF	19617	1	245,530	77.6	227	0.9	1,082	N/A	N/A
20	Flavobacterium psychrophilum JIP02/86	BBFF	19979	1	2,861,988	67.5	2,432	0.8	1,177	2,004	N/A
21	Candidatus Amoebophilus asiaticus 5a2	BBC	19981	1	1,884,364	65.0	1,283	0.8	1,469	N/A	N/A
22	Dyadobacter fermentans DSM 18053		20829	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A
23	Pedobacter heparinus DSM 2366	BBSS	27949	1	5,167,383	58.0	4,252	0.9	1,215	N/A	N/A
24	Chitinophaga pinensis DSM 2588		27951	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A
25	Chlorobaculum parvum NCIB 8327	BCCC	29213	1	2,289,249	44.2	2,043	0.9	1,121	N/A	N/A
26	Chloroherpeton thalassium ATCC 35110	BCCC	29215	1	3,293,456	55.0	2,710	0.9	1,215	N/A	N/A
27	Capnocytophaga ochracea DSM 7271	BBFF	29403	1	2,612,925	60.4	2,171	0.9	1,204	N/A	N/A
28	Blattabacterium sp. (Blattella germanica) str. Bge	BBFF	31103	1	636,850	72.9	587	1.0	1,085	N/A	N/A
29	Candidatus Sulcia muelleri SMDSEM	BBFF	33829	1	276,984	77.4	242	0.9	1,145	N/A	N/A
30	Candidatus Sulcia muelleri DMIN	BBFF	37785	1	243,933	77.5	226	0.9	1,079	N/A	N/A
31	Flavobacteriaceae bacterium 3519-10	BBFF	38559	1	2,768,102	57.3	2,534	0.9	1,092	N/A	N/A
32	Zunongwangia profunda SM-A87	BBFF	38641	1	5,128,187	63.8	4,653	0.9	1,102	N/A	N/A
33	Bacteroides fragilis NCTC 9343	BBBB	46	2	5,241,700	56.9	4,308	0.9	1,219	3,576	N/A
34	Bacteroides thetaiotaomicron VPI-5482	BBBB	399	2	6,293,399	57.1	4,816	0.9	1,308	4,217	N/A
35	Prosthecochloris aestuarii DSM 271	BCCC	12749	2	2,579,695	49.9	2,327	0.9	1,109	N/A	N/A
36	Bacteroides fragilis YCH46	BBBB	13067	2	5,310,990	56.8	4,625	0.9	1,150	3,645	N/A
37	Salinibacter ruber DSM 13855	BBSS	16159	2	3,587,328	33.9	2,833	0.8	1,267	2,438	N/A
38	Rhodothermus marinus DSM 4252	BBSS	29281	2	3,386,737	35.7	2,863	0.9	1,183	N/A	N/A
39	Blattabacterium sp. (Periplaneta americana) str. BPLAN	BBFF	32975	2	640,442	71.8	581	0.9	1,103	N/A	N/A
40	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2	BBBB	29025	5	1,224,919	67.1	852	0.7	1,445	N/A	N/A
41	Spirosoma linguale DSM 74	BBSS	28817	9	8,491,258	49.9	6,938	0.9	1,227	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini