CBS >> CBS Prediction Servers >> References and supplemental information >> Genome Update: Protein Secretion Systems in 225 Bacterial Genomes

Current database: version 19 build 1 (updated 2006-05-26 17:11:04)

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Supplemental information for:

"Genome Update: Protein Secretion Systems in 225 Bacterial Genomes", Tim T. Binnewies, Jannick D. Bendtsen, Peter F. Hallin, Natasja Nielsen, Trudy M. Wassenaar, Martin Bastian Pedersen, Per Klemm, David W. Ussery, Mircobiology 151:1013-1016 2005.

Newly sequenced genomes

Row	Organism Click to show species	Sub-strain	Taxgroup	Segment Click to show segment	Links	%AT	Size(bp)	Number of genes	tRNA count	rRNA count	Reference
1	Azoarcus species Strain: EbN1		BProt BR Proteobacteria Betaproteobacteria NCBI: Tax 76114	Genome		35.7%	5,158,280 bp	5068	58	5s 4 16s 4 23s 4	Arch Microbiol. 2002 Dec, 178(6):506-16. Epub 2002 Oct 3 2002 Dec [Abstract] \| [PubMed] \| [NCBI Entrez]
		BProt BR Proteobacteria Betaproteobacteria NCBI: Tax 76114	Main cir	CBS Download NCBI Entrez	34.9%	4,296,230 bp	4128	58 Codon Usage	5s 4 16s 4 23s 4	Arch Microbiol. 2002 Dec, 178(6):506-16. Epub 2002 Oct 3 2002 Dec [Abstract] \| [PubMed] \| [NCBI Entrez]
		BProt BR Proteobacteria Betaproteobacteria NCBI: Tax 76114	p1EbN1 cir	CBS Download NCBI Entrez	42.4%	207,355 bp	274	Codon Usage		Arch Microbiol. 2005 Jan, 183(1):27-36. Epub 2004 Nov 13 2005 Jan [Abstract] \| [PubMed] \| [NCBI Entrez]
		BProt BR Proteobacteria Betaproteobacteria NCBI: Tax 76114	p2EbN1 cir	CBS Download NCBI Entrez	36.9%	223,670 bp	196	Codon Usage		Arch Microbiol. 2005 Jan, 183(1):27-36. Epub 2004 Nov 13 2005 Jan [Abstract] \| [PubMed] \| [NCBI Entrez]
2	Chlamydia muridarum Strain: Nigg		BChlam CC Chlamydiae/Verrucomicrobia Chlamydiae NCBI: Tax 243161	Genome		59.7%	1,080,451 bp	911	0	5s 2 16s 2 23s 2	Nucleic Acids Res. 2000 Mar 15, 28(6):1397-406 2000 Mar 15 [Abstract] \| [PubMed] \| [NCBI Entrez]
		BChlam CC Chlamydiae/Verrucomicrobia Chlamydiae NCBI: Tax 243161	Main cir	CBS Download NCBI Entrez	59.7%	1,072,950 bp	904	Codon Usage	5s 2 16s 2 23s 2	Nucleic Acids Res. 2000 Mar 15, 28(6):1397-406 2000 Mar 15 [Abstract] \| [PubMed] \| [NCBI Entrez]
		BChlam CC Chlamydiae/Verrucomicrobia Chlamydiae NCBI: Tax 243161	pMoPn cir	CBS Download NCBI Entrez	64.3%	7,501 bp	7	Codon Usage		Nucleic Acids Res. 2000 Mar 15, 28(6):1397-406 2000 Mar 15 [Abstract] \| [PubMed] \| [NCBI Entrez]
3	Ehrlichia ruminantium Strain: Gardel		BProt ARi Proteobacteria Alphaproteobacteria NCBI: Tax 302409	Genome		72.5%	1,499,920 bp	950	0	5s 1 16s 1 23s 1	Unpublished [NCBI Entrez]
3	Ehrlichia ruminantium Strain: Gardel	BProt ARi Proteobacteria Alphaproteobacteria NCBI: Tax 302409	Main cir	CBS Download NCBI Entrez	72.5%	1,499,920 bp	950	Codon Usage	5s 1 16s 1 23s 1	Unpublished [NCBI Entrez]
4	Gluconobacter oxydans Strain: 621H		BProt AR Proteobacteria Alphaproteobacteria NCBI: Tax 290633	Genome		38.9%	2,702,173 bp	2432	0	5s 4 16s 4 23s 4	Nat Biotechnol. 2005 Feb, 23(2):195-200. Epub 2005 Jan 23 2005 Feb [Abstract] \| [PubMed] \| [NCBI Entrez]
4	Gluconobacter oxydans Strain: 621H	BProt AR Proteobacteria Alphaproteobacteria NCBI: Tax 290633	Main cir	CBS Download NCBI Entrez	38.9%	2,702,173 bp	2432	Codon Usage	5s 4 16s 4 23s 4	Nat Biotechnol. 2005 Feb, 23(2):195-200. Epub 2005 Jan 23 2005 Feb [Abstract] \| [PubMed] \| [NCBI Entrez]
5	Lactobacillus acidophilus Strain: NCFM		BFirm LL Firmicutes Bacilli NCBI: Tax 272621	Genome		65.3%	1,993,564 bp	1864	0	5s 4 16s 4 23s 3	Proc Natl Acad Sci U S A. 2005 Mar 15, 102(11):3906-12. Epub 2005 Jan 25 2005 Mar 15 [Abstract] \| [PubMed] \| [NCBI Entrez]
5	Lactobacillus acidophilus Strain: NCFM	BFirm LL Firmicutes Bacilli NCBI: Tax 272621	Main cir	CBS Download NCBI Entrez	65.3%	1,993,564 bp	1864	Codon Usage	5s 4 16s 4 23s 3	Proc Natl Acad Sci U S A. 2005 Mar 15, 102(11):3906-12. Epub 2005 Jan 25 2005 Mar 15 [Abstract] \| [PubMed] \| [NCBI Entrez]
6	Staphylococcus aureus Strain: COL		BFirm BS Firmicutes Bacilli NCBI: Tax 93062	pT181 lin	CBS Download NCBI Entrez	70.0%	4,440 bp	3	Codon Usage		J Bacteriol 2005 Apr, 187(7):2426-38 2005 Apr [Abstract] \| [PubMed] \| [NCBI Entrez]
7	Staphylococcus epidermidis Strain: RP62A		BFirm BS Firmicutes Bacilli NCBI: Tax 176279	Genome		67.9%	2,643,840 bp	2526	0	5s 7 16s 6 23s 6	J Bacteriol. 2005 Apr, 187(7):2426-38 2005 Apr [Abstract] \| [PubMed] \| [NCBI Entrez]
7	Staphylococcus epidermidis Strain: RP62A	BFirm BS Firmicutes Bacilli NCBI: Tax 176279	Main cir	CBS Download NCBI Entrez	67.9%	2,616,530 bp	2494	Codon Usage	5s 7 16s 6 23s 6	J Bacteriol. 2005 Apr, 187(7):2426-38 2005 Apr [Abstract] \| [PubMed] \| [NCBI Entrez]
8	Synechococcus elongatus Strain: PCC6301		BCyano CS Cyanobacteria Chroococcales NCBI: Tax 269084	Genome		44.5%	2,696,255 bp	2525	0	5s 2 16s 2 23s 2	Unpublished [NCBI Entrez]
8	Synechococcus elongatus Strain: PCC6301	BCyano CS Cyanobacteria Chroococcales NCBI: Tax 269084	Main cir	CBS Download NCBI Entrez	44.5%	2,696,255 bp	2525	Codon Usage	5s 2 16s 2 23s 2	Unpublished [NCBI Entrez]
9	Vibrio fischeri Strain: ES114		BProt GV Proteobacteria Gammaproteobacteria NCBI: Tax 312309	Genome		61.6%	4,284,050 bp	3802	0	5s 13 16s 12 23s 12	Proc Natl Acad Sci U S A. 2005 Feb 22, 102(8):3004-9. Epub 2005 Feb 9 2005 Feb 22 [Abstract] \| [PubMed] \| [NCBI Entrez]
		BProt GV Proteobacteria Gammaproteobacteria NCBI: Tax 312309	pES100 cir	CBS Download NCBI Entrez	61.6%	45,849 bp	55	Codon Usage		Proc Natl Acad Sci U S A. 2005 Feb 22, 102(8):3004-9. Epub 2005 Feb 9 2005 Feb 22 [Abstract] \| [PubMed] \| [NCBI Entrez]
		BProt GV Proteobacteria Gammaproteobacteria NCBI: Tax 312309	Chr 1 cir	CBS Download NCBI Entrez	61.0%	2,906,179 bp	2575	Codon Usage	5s 12 16s 11 23s 11	Proc Natl Acad Sci U S A. 2005 Feb 22, 102(8):3004-9. Epub 2005 Feb 9 2005 Feb 22 [Abstract] \| [PubMed] \| [NCBI Entrez]
		BProt GV Proteobacteria Gammaproteobacteria NCBI: Tax 312309	Chr 2 cir	CBS Download NCBI Entrez	63.0%	1,332,022 bp	1172	Codon Usage	5s 1 16s 1 23s 1	Proc Natl Acad Sci U S A. 2005 Feb 22, 102(8):3004-9. Epub 2005 Feb 9 2005 Feb 22 [Abstract] \| [PubMed] \| [NCBI Entrez]
10	Wolbachia endosymbiont Strain: TRS		BProt ARi Proteobacteria Alphaproteobacteria NCBI: Tax 292805	Genome		65.8%	1,080,084 bp	805	0	5s 1 16s 1 23s 1	PLoS Biol. 2005 Apr, 3(4):e121. Epub 2005 Mar 29 2005 Apr [Abstract] \| [PubMed] \| [NCBI Entrez]
10	Wolbachia endosymbiont Strain: TRS	BProt ARi Proteobacteria Alphaproteobacteria NCBI: Tax 292805	Main cir	CBS Download NCBI Entrez	65.8%	1,080,084 bp	805	Codon Usage	5s 1 16s 1 23s 1	PLoS Biol. 2005 Apr, 3(4):e121. Epub 2005 Mar 29 2005 Apr [Abstract] \| [PubMed] \| [NCBI Entrez]
11	Xanthomonas oryzae Strain: KACC10331		BProt GX Proteobacteria Gammaproteobacteria NCBI: Tax 291331	Genome		36.3%	4,941,439 bp	4637	0	5s 2 16s 2 23s 2	Nucleic Acids Res. 2005 Jan 26, 33(2):577-86. Print 2005 2005 Jan 26 [Abstract] \| [PubMed] \| [NCBI Entrez]
11	Xanthomonas oryzae Strain: KACC10331	BProt GX Proteobacteria Gammaproteobacteria NCBI: Tax 291331	Main cir	CBS Download NCBI Entrez	36.3%	4,941,439 bp	4637	Codon Usage	5s 2 16s 2 23s 2	Nucleic Acids Res. 2005 Jan 26, 33(2):577-86. Print 2005 2005 Jan 26 [Abstract] \| [PubMed] \| [NCBI Entrez]

Bacterial Secretion systems overview

CORRESPONDENCE:

Scientific questions:

This file was last modified Tuesday 13th of January 2009 12:38:00 GMTReferences and supplemental information for has been accessed 60,401 times since 2004-03-23 14:53:42

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