#BEGIN PYMOL SCRIPT

# Load in the data
load 1PW7.pdb

# Turn off default visualization
hide lines

#   hide nonbonded atoms (i.e. waters)
hide nonbonded

# Set background color
bg_color black

# Set default non-hit color for everything
color grey20

#   Make fancy helices with ridge on the edges like
#   molscript does
#   1 is on.  0 is off.
set cartoon_fancy_helices=1

#   Make the strands flat=1 or pass through CA positions=0
#   Set to 0 when showing side chains from a strand
set cartoon_flat_sheets = 1.0

#   Draw the loops smooth=1 or pass through CA positions=0
#   Set to 0 when showing side chains from a loop
set cartoon_smooth_loops = 0

# Show cartoon representation
show cartoon

# Select chain/molecule found by getstruct
select hitmol, chain c

# Color the selected chain 
color white (hitmol)


# Color section generated from the getstruct report (query/hit coverage)

color forest, (hitmol and resid 1-26)
color brown, (hitmol and resid 27)
color forest, (hitmol and resid 28-33)
color brown, (hitmol and resid 34)
color forest, (hitmol and resid 35)
color brown, (hitmol and resid 36)
color forest, (hitmol and resid 37-72)
color brown, (hitmol and resid 73)
color forest, (hitmol and resid 74-94)
color purple, (hitmol and resid 95-97)
color forest, (hitmol and resid 98-117)
color brown, (hitmol and resid 118)
color forest, (hitmol and resid 119-124)
color brown, (hitmol and resid 125)
color forest, (hitmol and resid 126-131)
color brown, (hitmol and resid 132)
color forest, (hitmol and resid 133)
color brown, (hitmol and resid 134)
color forest, (hitmol and resid 135-143)
color purple, (hitmol and resid 144)
color forest, (hitmol and resid 145)
color brown, (hitmol and resid 146-148)
color forest, (hitmol and resid 149-160)
color brown, (hitmol and resid 161)
color forest, (hitmol and resid 162-163)
color purple, (hitmol and resid 164)
color brown, (hitmol and resid 165)
color forest, (hitmol and resid 166-208)
color purple, (hitmol and resid 209)
color forest, (hitmol and resid 210-225)
color brown, (hitmol and resid 226)
color forest, (hitmol and resid 227-236)

#PDB structural information
#Removed additional structural information

#Query sequence annotation
color yellow, (hitmol and resid 4)
show stick, (hitmol and resid 12)
color brown, (hitmol and resid 12)
show stick, (hitmol and resid 17)
color calcium, (hitmol and resid 17)
show stick, (hitmol and resid 18)
color red, (hitmol and resid 18)
color yellow, (hitmol and resid 20)
color yellow, (hitmol and resid 21)
color yellow, (hitmol and resid 22)
color yellow, (hitmol and resid 24)
color yellow, (hitmol and resid 29)
show stick, (hitmol and resid 39)
color brown, (hitmol and resid 39)
color yellow, (hitmol and resid 43)
show stick, (hitmol and resid 47)
color blue, (hitmol and resid 47)
color yellow, (hitmol and resid 50)
show stick, (hitmol and resid 54)
color blue, (hitmol and resid 54)
color yellow, (hitmol and resid 63)
color yellow, (hitmol and resid 65)
color yellow, (hitmol and resid 68)
color yellow, (hitmol and resid 72)
show stick, (hitmol and resid 74)
color purple, (hitmol and resid 74)
color yellow, (hitmol and resid 75)
color yellow, (hitmol and resid 76)
show stick, (hitmol and resid 78)
color purple, (hitmol and resid 78)
show stick, (hitmol and resid 85)
color red, (hitmol and resid 85)
color yellow, (hitmol and resid 87)
color yellow, (hitmol and resid 89)
show stick, (hitmol and resid 91)
color white, (hitmol and resid 91)
color yellow, (hitmol and resid 92)
show stick, (hitmol and resid 114)
color cyan, (hitmol and resid 114)
show stick, (hitmol and resid 123)
color cyan, (hitmol and resid 123)
show stick, (hitmol and resid 127)
color brown, (hitmol and resid 127)
show stick, (hitmol and resid 135)
color orange, (hitmol and resid 135)
show stick, (hitmol and resid 139)
color orange, (hitmol and resid 139)
show stick, (hitmol and resid 159)
color calcium, (hitmol and resid 159)
color yellow, (hitmol and resid 160)
color yellow, (hitmol and resid 180)
color yellow, (hitmol and resid 181)
show stick, (hitmol and resid 202)
color white, (hitmol and resid 202)
show stick, (hitmol and resid 203)
color yellow, (hitmol and resid 203)
color yellow, (hitmol and resid 217)
show stick, (hitmol and resid 221)
color yellow, (hitmol and resid 221)
color yellow, (hitmol and resid 224)
color yellow, (hitmol and resid 229)

# ------ Coloration completed ---------

#zoom (hitmol)

# Do not show selection dots
deselect