#################################################################
# MatrixPlot config file:
# The format is simple: you simply type the option and its
# value on the same line. These should be placed at the first
# and second position on the line. Everything else is ignored.
# All variables not sat in this file will be sat to the default
# values in MatrixPlot. Here is a listing that contain the
# default options. To give a better overview all lines not
# used begins here with a '#'.
#################################################################



# misc
colorgrain  n
## scalefile   yourscale  # YOUR own file must always be given.
spacing     0.05
nlabel      y
maxout      n
pagewidth 140.0 
cout n

# grid on top of the plot
gridsize 0
xgridsize 0
ygridsize 0
gridthick 0.05

# title set up
titlesize 20
toffsetx 35
toffsety 275

# color scale placement
colorscale n
colsize 15
xcoloff 35
ycoloff 50

# seq logo profile
seqlogo n
neg y
usegaps y

# bars
bars n
bars2 n
barpos 15
xbarpos 15
ybarpos 15
barpos2 25
xbarpos2 25
ybarpos2 25
stringout n
stringout2 n
barthick 5
barthick2 5
onestring n
stringout n
stringscale 1.0
stringscale2 1.0

# number placement
numpos 2
xnumpos 2
ynumpos 2
numsize 15

# reverse x and y directions
xreverse n
yreverse n

# zoom options
zoomx1 -
zoomx2 -
zoomy1 -
zoomy2 -