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Output Format
Description
The output consists of 16 columns:
Residue number.
ID
Protien identifier
pep
Peptide sequence
aff
Predicted MHC binding affinity. The value is give as 1 - log50k(aff), where log50k is the logaritm with base 50.000, and aff is the affinity in nM units
aff_rescale
Rescale binding affinity. The predicted binding affinity is normalized by the 1% fractil
cle
C terminal cleavage affinity
tap
TAP transport efficiency
COMB
Prediction score
<-E. Identified MHC ligands
EXAMPLE OUTPUT
NetCTL predictions using MHC supertype A24. Threshold 0.500000
.......
17 ID 143B_BOVIN pep AERYDDMAA aff 0.0349 aff_rescale 0.0478 cle 0.0344 tap -0.5270 COMB 0.0249
18 ID 143B_BOVIN pep ERYDDMAAA aff 0.0348 aff_rescale 0.0476 cle 0.4333 tap -0.1920 COMB 0.0813
19 ID 143B_BOVIN pep RYDDMAAAM aff 0.3017 aff_rescale 0.4128 cle 0.9943 tap 0.4700 COMB 0.5357 <-E
20 ID 143B_BOVIN pep YDDMAAAMK aff 0.0352 aff_rescale 0.0482 cle 0.9622 tap 0.0930 COMB 0.1491
21 ID 143B_BOVIN pep DDMAAAMKA aff 0.0343 aff_rescale 0.0469 cle 0.6469 tap -1.1460 COMB 0.0543
......
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Number of MHC ligands 8 identified. Number of amino acids 237. Protein name 143B_BOVIN
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