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Output Format


Description




The output consists of 16 columns:
  • Residue number.
  • ID
  • Protien identifier
  • pep
  • Peptide sequence
  • aff
  • Predicted MHC binding affinity. The value is give as 1 - log50k(aff), where log50k is the logaritm with base 50.000, and aff is the affinity in nM units
  • aff_rescale
  • Rescale binding affinity. The predicted binding affinity is normalized by the 1st percentile score
  • cle
  • C terminal cleavage affinity
  • tap
  • TAP transport efficiency
  • COMB
  • Prediction score
  • <-E. Identified MHC ligands

    EXAMPLE OUTPUT

    
    
    NetCTL predictions using MHC supertype A24. Threshold 0.500000
    
    .......
    
      17 ID 143B_BOVIN pep AERYDDMAA aff   0.0349 aff_rescale   0.0478 cle 0.0344 tap  -0.5270 COMB   0.0249 
      18 ID 143B_BOVIN pep ERYDDMAAA aff   0.0348 aff_rescale   0.0476 cle 0.4333 tap  -0.1920 COMB   0.0813 
      19 ID 143B_BOVIN pep RYDDMAAAM aff   0.3017 aff_rescale   0.4128 cle 0.9943 tap   0.4700 COMB   0.5357 <-E
      20 ID 143B_BOVIN pep YDDMAAAMK aff   0.0352 aff_rescale   0.0482 cle 0.9622 tap   0.0930 COMB   0.1491 
      21 ID 143B_BOVIN pep DDMAAAMKA aff   0.0343 aff_rescale   0.0469 cle 0.6469 tap  -1.1460 COMB   0.0543
    ......
    
    ----------------------------
    
    Number of MHC ligands 8 identified. Number of amino acids 237. Protein name 143B_BOVIN
    
    ----------------------------
    
    
    
    



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