Output format



DESCRIPTION

The prediction output consists of 11 columns.

  • Prediction number
  • Protein identifier
  • HLA Allele
  • Peptide sequence
  • MHC Prediction score (in 1-log50K(aff) uniqs)
  • TAP Prediction score
  • Cleavage Prediction score
  • Combined Prediction score
  • %Random - %Rank of prediction score to a set of 1000.000 random natural 9mer peptides
  • Epitope assignment



  • EXAMPLE OUTPUT

    
    
    # NetCTLpan version 1.1
    
    
    # Peptide length 9
    # NetCTLpan predictions for HLA-A01:01 allele.
    
    
    #  N   Sequence Name       Allele      Peptide      MHC      TAP      Cle     Comb  %Rank
       0 143B_BOVIN__P29    HLA-A01:01    TMDKSELVQ  0.10500 -0.18300  0.16188  0.13685  50.00 
       1 143B_BOVIN__P29    HLA-A01:01    MDKSELVQK  0.02300  0.21200  0.53837  0.14943  50.00 
       2 143B_BOVIN__P29    HLA-A01:01    DKSELVQKA  0.01200 -0.77000  0.78670  0.16976  50.00 
       3 143B_BOVIN__P29    HLA-A01:01    KSELVQKAK  0.07600  0.32900  0.45985  0.18769  32.00 
       4 143B_BOVIN__P29    HLA-A01:01    SELVQKAKL  0.01400  0.99100  0.91927  0.24561  32.00 
    ...
     235 143B_BOVIN__P29    HLA-A01:01    DEGDAGEGE  0.00300 -2.21000  0.04146 -0.04292  50.00 
     236 143B_BOVIN__P29    HLA-A01:01    EGDAGEGEN  0.02000 -2.10100  0.05666 -0.01978  50.00 
    
    ----------------------------------------------------------------------
    
    Number of MHC ligands 4 identified. Number of peptides 237. Allele HLA-A0101. Protein name 143B_BOVIN__P29
    
    ----------------------------------------------------------------------
    
    



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