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Version history


Please click on the version number to activate the corresponding server.

3.1 The current server. New in this version:
  • Improved quality of prediction through novel sequence encoding and network training strategy

Main publication:

  • The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage.
    Nielsen M, Lundegaard C, Lund O, and Kesmir C.
    Immunogenetics, 57:33-41, 2005.

    View the abstract.

2.0 New in this version:
  • NetChop 2.0 C-term: Proteasome clevage predictor trained on C terminal of known CTL epitopes
  • NetChop 2.0 20S: Proteasome clevage predictor trained on in vitro digest data produced by the constitutive proteasome

Main publication:

  • Prediction of proteasome cleavage motifs by neural networks.
    Kesmir C, Nussbaum AK, Schild H, Detours V, Brunak S
    Protein Eng15(4):287-96, 2002

    View the abstract.




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