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CBS >> Prediction Servers >> NetGene2

NetGene2 Server

The NetGene2 server is a service producing neural network predictions of splice sites in human, C. elegans and A. thaliana DNA.

Instructions Output format Abstract Performance report

SUBMISSION

Submission of a local file with a single sequence:

File in FASTA format

Human
C. elegans
A. thaliana

Submission by pasting a single sequence:

Sequence name

Human
C. elegans
A. thaliana

Sequence

NOTE: The submitted sequences are kept confidential and will be erased immediately after processing.

Restrictions:
At most 1 sequence not less than 200 and not more than 100,000 nucleotides.
The sequence identifier can only contain alphanumeric characters.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.

CITATIONS

PAPERS TO REFERENCE WHEN REPORTING RESULTS
S.M. Hebsgaard, P.G. Korning, N. Tolstrup, J. Engelbrecht, P. Rouze, S. Brunak: Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information, Nucleic Acids Research, 1996, Vol. 24, No. 17, 3439-3452. Brunak, S., Engelbrecht, J., and Knudsen, S.: Prediction of Human mRNA Donor and Acceptor Sites from the DNA Sequence, Journal of Molecular Biology, 1991, 220, 49-65.

PORTABLE VERSION

Would you prefer to run NetGene2 at your own site? NetGene2 2.42 is available as a stand-alone software package, with the same functionality as the service above. There is a download page for academic users; other users are requested to contact CBS Software Package Manager at software@cbs.dtu.dk.

GETTING HELP

Scientific problems:        Technical problems:       

This file was last modified Wednesday 20th 2016f July 2016 10:33:40 GMT