As of June 9th a minor bug has been corrected in the stand-alone version of NetMHC-3.4. This bug (identified when running the package on Darwin OSX Yosemite) led to no output being produced when running the code. Note, if your have a functioning code, you do not need to make any changes.

The bug was in the program epipred3.0 placed in the bin directory of the packages. To correct the bug, download an updated version of the epipred3.0 executable matching your platform (Darwin or Linux), and place it in the corresponding bin folder (replacing the old epipred3.0 file). You might have to change permission on the file to make it executable (chmod a+x epipred3.0)

Downloads for different platforms can be found at
Darwin x86_64
Linux x86_64
Linux ia64
Linux i386/i486/i586/i686/i786


Morten Nielsen,