NetMHCII 2.1 Server
NetMHCII 2.1 server predicts binding of peptides
to HLA-DR, HLA-DQ, HLA-DP and mouse MHC class II alleles using articial neuron networks.
Predictions can be obtained for 14 HLA-DR alleles covering the 9 HLA-DR supertypes, four HLA-DQ, four HLA-DP, and three mouse H2 class II
The prediction values are given in nM IC50 values, and as a %-Rank to a set of 1000.000 random natural peptides.
Strong and weak binding peptides are indicated in the output.
The server can be run in two modes. Default mode is with P1 amino acids preference.
This option is recommended for accurate binding core identification.
The other mode excludes P1 amino acids preference encoding, and is turned on selecting the
Turn of P1 amino acid preference option. This mode is recommended for accurate binding affinity prediction.
View the version history of this server.
All the previous versions are available on line, for comparison and