NetMHCII 2.3 Server
NetMHCII 2.3 server predicts binding of peptides
to HLA-DR, HLA-DQ, HLA-DP and mouse MHC class II alleles using articial neuron networks.
Predictions can be obtained for 25 HLA-DR alleles, 20 HLA-DQ, 9 HLA-DP,
and 7 mouse H2 class II alleles.
The prediction values are given in nM IC50 values, and as a %-Rank to a set of 1,000,000 random natural peptides.
Strong and weak binding peptides are indicated in the output.
View the version history of this server.
All the previous versions are available on line, for comparison and
For publication of results, please cite:
Improved methods for predicting peptide binding affinity to MHC class II molecules.
Jensen KK, Andreatta M, Marcatili P, Buus S, Greenbaum JA, Yan Z, Sette A, Peters B, and Nielsen M.
Would you prefer to run NetMHCII at your own site? NetMHCII v. 2.3
is available as a stand-alone software package, with the same
functionality as the service above.
exist for the most common UNIX/Darwin platforms.
There is a
for academic users; other users are requested to contact
CBS Software Package Manager at