CBS >> CBS Prediction Servers >> NetMHCIIpan >> Output format
Residue number (starting from 0) HLA Allele Peptide sequence Protein identifier Start position of binding core (starting from 0) Binding core Prediction score (1-log15K(aff)) Affinity IC50 value in nM %Rank score - Percential rank for score to a set of 200,000 random natural peptides Binding level, WB for weak biding, SB for strong binder
# Input is in FSA format # Threshold for Strong binding peptides 50.000 # Threshold for Weak binding peptides 500.000 ----------------------------------------------------------------------------------------------------------------- pos HLA peptide Identity Pos Core 1-log50k(aff) Affinity(nM) %Rank BindLevel ----------------------------------------------------------------------------------------------------------------- 0 DRB1*0401 ASQKRPSQRHGSKYL seq2_optional_c 6 SQRHGSKYL 0.041 10132.07 50.00 1 DRB1*0401 SQKRPSQRHGSKYLA seq2_optional_c 5 SQRHGSKYL 0.060 8394.55 50.00 2 DRB1*0401 QKRPSQRHGSKYLAT seq2_optional_c 4 SQRHGSKYL 0.077 7144.65 50.00 3 DRB1*0401 KRPSQRHGSKYLATA seq2_optional_c 4 QRHGSKYLA 0.098 5824.18 50.00 4 DRB1*0401 RPSQRHGSKYLATAS seq2_optional_c 3 QRHGSKYLA 0.121 4663.47 50.00 5 DRB1*0401 PSQRHGSKYLATAST seq2_optional_c 6 SKYLATAST 0.167 3012.29 50.00 6 DRB1*0401 SQRHGSKYLATASTM seq2_optional_c 6 KYLATASTM 0.324 665.84 32.00 7 DRB1*0401 QRHGSKYLATASTMD seq2_optional_c 6 YLATASTMD 0.476 153.62 8.00 <= WB 8 DRB1*0401 RHGSKYLATASTMDH seq2_optional_c 5 YLATASTMD 0.595 48.95 2.00 <= SB 9 DRB1*0401 HGSKYLATASTMDHA seq2_optional_c 4 YLATASTMD 0.695 18.83 0.40 <= SB 10 DRB1*0401 GSKYLATASTMDHAR seq2_optional_c 3 YLATASTMD 0.740 12.24 0.15 <= SB 11 DRB1*0401 SKYLATASTMDHARH seq2_optional_c 2 YLATASTMD 0.722 14.55 0.20 <= SB 12 DRB1*0401 KYLATASTMDHARHG seq2_optional_c 1 YLATASTMD 0.663 25.44 0.70 <= SB 13 DRB1*0401 YLATASTMDHARHGF seq2_optional_c 0 YLATASTMD 0.480 148.99 7.00 <= WB 14 DRB1*0401 LATASTMDHARHGFL seq2_optional_c 0 LATASTMDH 0.225 1727.75 50.00
