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Output format



DESCRIPTION

The prediction output consists of 8 columns.

  • Residue number
  • HLA Allele
  • Peptide sequence
  • Protein identifier
  • Prediction score (called 1-log50K(aff))
  • Affinity as IC50 value in nM (only for white-listed alleles)
  • %Random - %Rank of prediction score to a set of 1000.000 random natural 9mer peptides
  • Binding level (SB: strong binder, WB: weak binder)



  • EXAMPLE OUTPUT

    
    
    # NetMHCpan version 2.1
    
    # Input is in FSA format
    
    HLA-A0101 : Estimated prediction accuracy  0.811 (using nearest neighbor HLA-A0101)
    
    # Threshold for Strong binding peptides  50.000
    # Threshold for Weak binding peptides 500.000
    -----------------------------------------------------------------------------------
      pos        HLA    peptide        Identity 1-log50k(aff) Affinity(nM)  %Random  BindLevel
    -----------------------------------------------------------------------------------
        0 HLA-A*0101  ASQKRPSQR seq2_optional_c         0.063     25230.98    32.00
        1 HLA-A*0101  SQKRPSQRH seq2_optional_c         0.023     38824.58    50.00
        2 HLA-A*0101  QKRPSQRHG seq2_optional_c         0.003     48254.07    50.00
        3 HLA-A*0101  KRPSQRHGS seq2_optional_c         0.009     45287.57    50.00
    
    



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