CBS >> CBS Prediction Servers >> NetMHCpan >> Output format
Residue number HLA Allele Peptide sequence Protein identifier Prediction score (called 1-log50K(aff)) Affinity as IC50 value in nM (only for white-listed alleles) %Random - %Rank of prediction score to a set of 1000.000 random natural 9mer peptides Binding level (SB: strong binder, WB: weak binder)
# NetMHCpan version 2.8 # Input is in FSA format HLA-A0101 : Estimated prediction accuracy 0.811 (using nearest neighbor HLA-A0101) # Threshold for Strong binding peptides 50.000 # Threshold for Weak binding peptides 500.000 ----------------------------------------------------------------------------------- pos HLA peptide Identity 1-log50k(aff) Affinity(nM) %Random BindLevel ----------------------------------------------------------------------------------- 0 HLA-A*0101 ASQKRPSQR seq2_optional_c 0.063 25230.98 32.00 1 HLA-A*0101 SQKRPSQRH seq2_optional_c 0.023 38824.58 50.00 2 HLA-A*0101 QKRPSQRHG seq2_optional_c 0.003 48254.07 50.00 3 HLA-A*0101 KRPSQRHGS seq2_optional_c 0.009 45287.57 50.00
