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CBS >> CBS Prediction Servers >> NetOGlyc

NetOGlyc 4.0 Server

The NetOglyc server produces neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins.

View the version history of this server.

Instructions Output format Article abstract

SUBMISSION

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Note: Please allow 2-3 minutes of processing time per input sequence.

Restrictions: At most 50 sequences and 200,000 amino acids per submission; each sequence not more than 4,000 amino acids.

Confidentiality: The sequences are kept confidential and will be deleted after processing.

CITATIONS

For publication of results, please cite:

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.
Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H.
EMBO J, 32(10):1478-88, May 15, 2013.
(doi: 10.1038/emboj.2013.79. Epub 2013 Apr 12)

PMID: 23584533           View the abstract

PORTABLE VERSION

Would you prefer to run NetOGlyc at your own site? A NetOGlyc 4.0 software package is in preparation. It makes use of DisEMBL, NetSurfP, TMHMM and LIBSVM. The user will need to obtain all those components (except LIBSVM) in order to use the package. Please contact CBS Software Package Manager at software@cbs.dtu.dk for details.

GETTING HELP

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This file was last modified Friday 23rd 2016f September 2016 11:42:42 GMT