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CBS >> CBS Prediction Servers >> NetPhosK

NetPhosK 1.0 Server

The NetPhosK 1.0 server produces neural network predictions of kinase specific eukaryotic protein phosphoylation sites. Currently NetPhosK covers the following kinases: PKA, PKC, PKG, CKII, Cdc2, CaM-II, ATM, DNA PK, Cdk5, p38 MAPK, GSK3, CKI, PKB, RSK, INSR, EGFR and Src.

Generic (non kinase specific) phosphorylation predictions are available at: http://www.cbs.dtu.dk/services/NetPhos/

Instructions Output format Article abstract NetPhos PhosphoBase

SUBMISSION

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Method to use:
Prediction without filtering (fast)
Prediction with ESS (Evolutionary Stable Sites) Filter (very slow)
Kinase Landscapes (Graphics)

Threshold

Restrictions:
At most 10 sequences and 10,000 amino acids per submission; each sequence not less than 15 and not more than 4,000 amino acids.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.

CITATIONS

For publication of results, please cite:

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, Brunak S. Proteomics. 2004 Jun;4(6):1633-49. Review.

View the abstract.

GETTING HELP

Scientific problems:        Technical problems:       

This file was last modified Thursday 25th 2013f April 2013 12:53:52 GMT