Events News Research CBS CBS Publications Bioinformatics
Staff Contact About Internal CBS CBS Other

NetPhosK 1.0 Server

The NetPhosK 1.0 server produces neural network predictions of kinase specific eukaryotic protein phosphoylation sites. Currently NetPhosK covers the following kinases: PKA, PKC, PKG, CKII, Cdc2, CaM-II, ATM, DNA PK, Cdk5, p38 MAPK, GSK3, CKI, PKB, RSK, INSR, EGFR and Src.

Generic (non kinase specific) phosphorylation predictions are available at: http://www.cbs.dtu.dk/services/NetPhos/

Instructions Output format Article abstract NetPhos PhosphoBase

SUBMISSION

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Method to use:
Prediction without filtering (fast)
Prediction with ESS (Evolutionary Stable Sites) Filter (very slow)
Kinase Landscapes (Graphics)

Threshold

Restrictions:
At most 10 sequences and 10,000 amino acids per submission; each sequence not less than 15 and not more than 4,000 amino acids.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.


CITATIONS

For publication of results, please cite:

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, Brunak S. Proteomics. 2004 Jun;4(6):1633-49. Review.

View the abstract.


GETTING HELP

Scientific problems:        Technical problems: