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Output format
DESCRIPTION
For each input sequence the following is shown (see the example below):
- Header line, quoting the name of the sequence.
- Sequence, in one-letter code, as it was interpreted by the server.
- List of selected prediction options (see
instructions).
- For each prediction option the output contains predictions for all
the input residues matching the pattern for that particular
prediction (in the instructions see
the notes for each cleavage type). Firstly, a sequential list of the
residues is shown and secondly, a list sorted by the value of the
cleavage score (highest scores first). For each residue the columns
are as follows:
| Residue
| The amino acid residue at position P1
of the cleavage site (P3-P2-P1*P1'-P2'-P3'),
where cleavage is between P1 and P1'.
| | Pos
| Position of the residue in your sequence.
| | Clv
| Cleavage score output from the neural network
in the interval 0.000-1.000. Scores above 0.500
are predicted as potential cleavage sites. The
higher the score, the more probable the prediction.
| | Surf
| Surface score output from the neural network
in the interval 0.000-1.000. Scores above 0.500
are predicted as surface exposed sites. The
higher the score, the more probable the prediction.
| | Sequence
| A window of seven residues centered on the
residue being examined.
| | Comment
| The word 'Potential' indicates that Clv > 0.500 and
the site is a potential cleavage site.
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Note: in the output the sequences are sorted alphabetically (by sequence name);
thus, the original order is not preserved.
EXAMPLE
Lines containing the prediction scores may look like this:
Residue Pos Clv Surf Sequence Comment
-----------------------------------------------------------------
Q 85 0.927 0.626 QNTQGLI Potential
E 97 0.077 0.561 NDRERVN
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