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NetSurfP - Protein Surface Accessibility and Secondary Structure Predictions

NetSurfP server predicts the surface accessibility and secondary structure of amino acids in an amino acid sequence.
The method also simultaneously predicts the reliability for each prediction, in the form of a Z-score. The Z-score is related to the surface prediction, and not the secondary structure.


A never and faster version of NetSurfP is now available. Please use NetSurfP-1.1

Instructions Output format Article abstract

Jobs typically take around 5 minutes to be processed. If there is no response after 2 hours please email bent [at] cbs.dtu.dk

Paste in sequence data (maximum 500 sequences)

or upload sequence data
Valid format examples: Fasta

All sequences must be submitted in amino acid format and have a unique sequence id!

Addition to output

Show Secondary Structure Predictions
Instructions: Paste in or upload the input FASTA file and make sure that all sequences have a unique sequence id.

Please read the CBS access policies for information about limitations on the daily number of submissions.

CITATIONS

For publication of results, please cite:

A generic method for assignment of reliability scores applied to solvent accessibility predictions.
Bent Petersen, Thomas Nordahl Petersen, Pernille Andersen, Morten Nielsen and Claus Lundegaard1.
BMC Structural Biology 2009, 9:51 doi:10.1186/1472-6807-9-51.


View the abstract: abstract
The electronic version of this article is found here: download

PORTABLE VERSION

Would you prefer to run NetSurfP at your own site?. Send inquiries by e-mail to software@cbs.dtu.dk.

GETTING HELP

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This file was last modified Monday 20th of September 2010 14:03:38 GMT