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NetTest 1.0 Server

NetTest 1.0 server is a template used for speedy creation of new prediction servers at CBS. Setting up a new server should be in three steps:

  • Create and test the program the new server is expected to use. It may not be interactive; the synopsis should be:
        prog options file.fsa ...
    The input is assumed to be in FASTA format; the output should go to stdout.

  • On 'genome', copy this distribution to a new directory under http://www.cbs.dtu.dk/services/ :
        cd /usr/opt/www/pub/CBS/services
        cp -R NetTest-1.0 NewServer-1.0
  • Edit the files in NewServer-1.0 substituting the contents of your choice.

Instructions Output format Article abstract

SUBMISSION

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Software to run               Example button

    Special input

Restrictions:
At most ? sequences and ? amino acids per submission; each sequence not less than ? and not more than ? amino acids.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.


CITATIONS

For publication of results, please cite:

NetTest 1.0: here is the title of the publication that might end up very long.
P. Robinson, J. Brown, A. Roberts and W. Smythe.
Hot Science: 13: 117-123, 2005.

View the abstract.


PORTABLE VERSION

Would you prefer to run NetTest at your own site? NetTest 1.0 is available as a package on a commercial license. Currently available platforms include MIPS (under IRIX, Silicon Graphics), SPARC (under Solaris, Sun), Alpha (under OSF1) and Pentium family (under Linux and CYGWIN). Send inquiries by e-mail to software@cbs.dtu.dk.


GETTING HELP

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