Design Primers
Brief instructions:
In this section it is possible to define completely custom fusion cassettes. Please refer to the
Instruction page for examples. Selections made in this section have priority over ANY other setttings - use with care.
Custom designed fusion cassettes
Forward strand (5'-3'):
Example: GCTGAGGGTTTAAT.TAAGACC.TCAGC
First period indicates the position of the restriction site, and second period indicates
the position of the nicking site
Reverse strand (3'-5'):
Example: CGACT.CCCAAAT.TAATTCTGGAGTCG
First period indicates the position of the nicking site, and second period indicates
the position of the restriction site
Here you can select a predefined fusion cassette (see details below)
1:
Name: PacI/Nt.BbvCI
Forward strand: GCTGAGGGTTTAATTAAGACCTCAGC
Reverse strand: CGACTCCCAAATTAATTCTGGAGTCG
2:
Name: XbaI2/Nt.BbvCI
Forward strand: GCTGAGGGAAAGTCTAGAGGATCCTCTAGATGTCTCCTCAGC
Reverse strand: CGACTCCCTTTCAGATCTCCTAGGAGATCTACAGAGGAGTCG
3:
Name: PmeI/Nb.BbvCI
Forward strand: CCTCAGCCGTTTAAACAGCTGAGG
Reverse strand: GGAGTCGGCAAATTTGTCGACTCC
4:
Name: AsiSI/Nb.BSMI
Forward strand: GAATGCGTGCGATCGCGTGCATTC
Reverse strand: CTTACGCACGCTAGCGCACGTAAG
5:
Name: AsiSI/Nb.BtsI
Forward strand: GCAGTGAGAGCGATCGCAGACACTGC
Reverse strand: CGTCACTCTCGCTAGCGTCTGTGACG