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DESCRIPTION
For each input sequence the name and length are first printed, followed
by a table in the form:
Position
Score
Likelihood
where 'Position' is a position in the sequence, 'Score' is the prediction
score for a transcription start site occurring within 100 base pairs upstream
from that position and 'Likelihood' is a descriptive label associated with
that score. The scores are always positive numbers; they are labelled as
follows:
|
below 0.5 |
ignored
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0.5 - 0.8 |
Marginal prediction
|
0.8 - 1.0 |
Medium likely prediction
|
above 1.0 |
Highly likely prediction
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Consult the performance notes for comments
on the prediction scores.
The input sequence will be included in the output, preceeding the predictions
if "Full output" has been selected.
EXAMPLE OUTPUT
Promoter 2.0 Prediction Results
INPUT SEQUENCE:
>gi_209811_gb_J01917_ADRCG Adenovirus type 2, complete genome.
CATCATCATAATATACCTTATTTTGGATTGAAGCCAATATGATAATGAGGGGGTGGAGTT
TGTGACGTGGCGCGGGGCGTGGGAACGGGGCGGGTGACGTAGTAGTGTGGCGGAAGTGTG
ATGTTGCAAGTGTGGCGGAACACATGTAAGCGCCGGATGTGGTAAAAGTGACGTTTTTGG
TGTGCGCCGGTGTATACGGGAAGTGACAATTTTCGCGCGGTTTTAGGCGGATGTTGTAGT
AAATTTGGGCGTAACCAAGTAATGTTTGGCCATTTTCGCGGGAAAACTGAATAAGAGGAA
GTGAAATCTGAATAATTCTGTGTTACTCATAGCGCGTAATATTTGTCTAGGGCCGCGGGG
ACTTTGACCGTTTACGTGGAGACTCGCCCAGGTGTTTTTCTCAGGTGTTTTCCGCGTTCC
GGGTCAAAGTTGGCGTTTTATTATTATAGTCAGCTGACGCGCAGTGTATTTATACCCGGT
GAGTTCCTCAAGAGGCCACTCTTGAGTGCCAGCGAGTAGAGTTTTCTCCTCCGAGCCGCT
CCGACACCGGGACTGAAAATGAGACATATTATCTGCCACGGAGGTGTTATTACCGAAGAA
ATGGCCGCCAGTCTTTTGGACCAGCTGATCGAAGAGGTACTGGCTGATAATCTTCCACCT
CCTAGCCATTTTGAACCACCTACCCTTCACGAACTGTATGATTTAGACGTGACGGCCCCC
GAAGATCCCAACGAGGAGGCGGTTTCGCAGATTTTTCCCGAGTCTGTAATGTTGGCGGTG
CAGGAAGGGATTGACTTATTCACTTTTCCGCCGGCGCCCGGTTCTCCGGAGCCGCCTCAC
CTTTCCCGGCAGCCCGAGCAGCCGGAGCAGAGAGCCTTGGGTCCGGTTTCTATGCCAAAC
CTTGTGCCGGAGGTGATCGATCTTACCTGCCACGAGGCTGGCTTTCCACCCAGTGACGAC
GAGGATGAAGAGGGTGAGGAGTTTGTGTTAGATTATGTGGAGCACCCCGGGCACGGTTGC
AGGTCTTGTCATTATCACCGGAGGAATACGGGGGACCCAGATATTATGTGTTCGCTTTGC
TATATGAGGACCTGTGGCATGTTTGTCTACAGTAAGTGAAAATTATGGGCAGTCGGTGAT
AGAGTGGTGGGTTTGGTGTGGTAATTTTTTTTTAATTTTTACAGTTTTGTGGTTTAAAGA
PREDICTED TRANSCRIPTION START SITES:
gi_209811_gb_J01917_ADRCG Adenovirus type 2, complete genome., 1200 nucleotides
Position Score Likelihood
600 1.063 Highly likely prediction
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