seqname |
The name of the fasta entry in which the rRNA feature was predicted. The input can contain multiple entries. |
source |
The version of the RNAmmer prediction tool. |
feature |
Always 'rRNA' |
start |
Start position of the rRNA feature |
end |
End position of the rRNA feature |
score |
The HMM alignment score of the calibrated full length model within the window
defined by the spotter model
|
+/- |
Direction (strand) of the rRNA feature |
frame |
N/A (always '.') |
attribute |
rRNA subunit type (5/8s,16/18s,23/28s rRNA)
E-value and score of the HMM alignment of the calibrated full length model
within the window defined by the spotter model.
|
mol |
rRNA subunit type (5/8s,16/18s,23/28s rRNA) |
feature |
Always 'rRNA' |
start |
Start position of the rRNA feature |
stop |
End position of the rRNA feature |
direction |
Direction (strand) of the rRNA feature |
score |
The HMM alignment score of the calibrated full length model within the window
defined by the spotter model. |
evalue |
The HMM alignment E-value of the calibrated full length model within the window
defined by the spotter model. |
sequenceEntry |
The name of the FASTA sequence entry in which the feature has been predicted |
sequence |
The raw DNA sequence of the rRNA gene |
model_string |
The HMM consensus sequence = the highest probability amino acids. Capital letters equal to the highly conserved residues (probability > 0.9) |
match_string |
Letters are exact matches to the consensus sequence. '+' means positive score |
query_string |
The query sequence itself |