#Gnuplot commands for SignalP job
set data style lines
set yrange [-0.2:1.1]
set ytics 0,0.2,1
set size 1,0.7
set format y "%.1f"
set title "SignalP-NN prediction (euk networks): BM2K_HUMAN"
set xlabel "Position"
set ylabel "Score"
set nolabel
set label "" at 0,-0.1 center
set label "M" at 1,-0.1 center
set label "K" at 2,-0.1 center
set label "K" at 3,-0.1 center
set label "F" at 4,-0.1 center
set label "S" at 5,-0.1 center
set label "R" at 6,-0.1 center
set label "M" at 7,-0.1 center
set label "P" at 8,-0.1 center
set label "K" at 9,-0.1 center
set label "S" at 10,-0.1 center
set label "E" at 11,-0.1 center
set label "G" at 12,-0.1 center
set label "G" at 13,-0.1 center
set label "S" at 14,-0.1 center
set label "G" at 15,-0.1 center
set label "G" at 16,-0.1 center
set label "G" at 17,-0.1 center
set label "A" at 18,-0.1 center
set label "A" at 19,-0.1 center
set label "G" at 20,-0.1 center
set label "G" at 21,-0.1 center
set label "G" at 22,-0.1 center
set label "A" at 23,-0.1 center
set label "G" at 24,-0.1 center
set label "G" at 25,-0.1 center
set label "A" at 26,-0.1 center
set label "G" at 27,-0.1 center
set label "A" at 28,-0.1 center
set label "G" at 29,-0.1 center
set label "A" at 30,-0.1 center
set label "G" at 31,-0.1 center
set label "C" at 32,-0.1 center
set label "G" at 33,-0.1 center
set label "S" at 34,-0.1 center
set label "G" at 35,-0.1 center
set label "G" at 36,-0.1 center
set label "S" at 37,-0.1 center
set label "S" at 38,-0.1 center
set label "V" at 39,-0.1 center
set label "G" at 40,-0.1 center
set label "V" at 41,-0.1 center
set label "R" at 42,-0.1 center
set label "V" at 43,-0.1 center
set label "F" at 44,-0.1 center
set label "A" at 45,-0.1 center
set label "V" at 46,-0.1 center
set label "G" at 47,-0.1 center
set label "R" at 48,-0.1 center
set label "H" at 49,-0.1 center
set label "Q" at 50,-0.1 center
set label "V" at 51,-0.1 center
set label "T" at 52,-0.1 center
set label "L" at 53,-0.1 center
set label "E" at 54,-0.1 center
set label "E" at 55,-0.1 center
set label "S" at 56,-0.1 center
set label "L" at 57,-0.1 center
set label "A" at 58,-0.1 center
set label "E" at 59,-0.1 center
set label "G" at 60,-0.1 center
set label "G" at 61,-0.1 center
set label "F" at 62,-0.1 center
set label "S" at 63,-0.1 center
set label "T" at 64,-0.1 center
set label "V" at 65,-0.1 center
set label "F" at 66,-0.1 center
set label "L" at 67,-0.1 center
set label "V" at 68,-0.1 center
set label "R" at 69,-0.1 center
set label "T" at 70,-0.1 center
set output
set term pbm small color
set output "|/usr/unic/bin/ppmtogif>plot.nn.1.gif "
plot   "nn-score.1" u 1:3 t "C score" w imp, \
       "nn-score.1" u 1:4 t "S score", \
       "nn-score.1" u 1:5 t "Y score", \
       0.5 t "" with dots
set title "SignalP-HMM prediction (euk models): BM2K_HUMAN"
set xlabel "Position"
set ylabel "Score"
set nolabel
set label "M" at 1,-0.1 center
set label "K" at 2,-0.1 center
set label "K" at 3,-0.1 center
set label "F" at 4,-0.1 center
set label "S" at 5,-0.1 center
set label "R" at 6,-0.1 center
set label "M" at 7,-0.1 center
set label "P" at 8,-0.1 center
set label "K" at 9,-0.1 center
set label "S" at 10,-0.1 center
set label "E" at 11,-0.1 center
set label "G" at 12,-0.1 center
set label "G" at 13,-0.1 center
set label "S" at 14,-0.1 center
set label "G" at 15,-0.1 center
set label "G" at 16,-0.1 center
set label "G" at 17,-0.1 center
set label "A" at 18,-0.1 center
set label "A" at 19,-0.1 center
set label "G" at 20,-0.1 center
set label "G" at 21,-0.1 center
set label "G" at 22,-0.1 center
set label "A" at 23,-0.1 center
set label "G" at 24,-0.1 center
set label "G" at 25,-0.1 center
set label "A" at 26,-0.1 center
set label "G" at 27,-0.1 center
set label "A" at 28,-0.1 center
set label "G" at 29,-0.1 center
set label "A" at 30,-0.1 center
set label "G" at 31,-0.1 center
set label "C" at 32,-0.1 center
set label "G" at 33,-0.1 center
set label "S" at 34,-0.1 center
set label "G" at 35,-0.1 center
set label "G" at 36,-0.1 center
set label "S" at 37,-0.1 center
set label "S" at 38,-0.1 center
set label "V" at 39,-0.1 center
set label "G" at 40,-0.1 center
set label "V" at 41,-0.1 center
set label "R" at 42,-0.1 center
set label "V" at 43,-0.1 center
set label "F" at 44,-0.1 center
set label "A" at 45,-0.1 center
set label "V" at 46,-0.1 center
set label "G" at 47,-0.1 center
set label "R" at 48,-0.1 center
set label "H" at 49,-0.1 center
set label "Q" at 50,-0.1 center
set label "V" at 51,-0.1 center
set label "T" at 52,-0.1 center
set label "L" at 53,-0.1 center
set label "E" at 54,-0.1 center
set label "E" at 55,-0.1 center
set label "S" at 56,-0.1 center
set label "L" at 57,-0.1 center
set label "A" at 58,-0.1 center
set label "E" at 59,-0.1 center
set label "G" at 60,-0.1 center
set label "G" at 61,-0.1 center
set label "F" at 62,-0.1 center
set label "S" at 63,-0.1 center
set label "T" at 64,-0.1 center
set label "V" at 65,-0.1 center
set label "F" at 66,-0.1 center
set label "L" at 67,-0.1 center
set label "V" at 68,-0.1 center
set label "R" at 69,-0.1 center
set label "T" at 70,-0.1 center
set output
set term pbm small color
set output "|/usr/unic/bin/ppmtogif>plot.hmm.1.gif "
plot   "hmm-score.1" u 1:3 t "Cleavage prob." w imp, \
       "hmm-score.1" u 1:5 t "n-region prob.", \
       "hmm-score.1" u 1:6 t "h-region prob.", \
       "hmm-score.1" u 1:7 t "c-region prob." 5, \
       0.5 t "" with dots