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DistanceP Server

The distanceP server predicts distance constraints between amino acids in proteins from the amino acid sequence. It is an update of the Sowhat server.

Introduction and documentation.


SUBMISSION:

Sequence name

Sequence (All non standard amino acid symbols are discarded. However, "X" is a wildcard)

Customize the run: (hint: first try using the default values)

Sequence separation:    Min (2)       Max (50) 

Display graphics

Show sequence letters on the edges of the plot

Number of profiles sequences (max 40)  

Show performance for PDB entry chain and compare to true values.
(This option will ignore any sequence pasted in below).

Confidentiality:
The sequences are kept confidential and will be deleted after processing.Confidentiality:


CITATIONS

For publication of results, please cite:

Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints.
J. Gorodkin, O. Lund, C. A. Andersen, and S. Brunak
In proceedings of the Seventh International Conference for Molecular Biology,
eds. T. Lengauer, R. Schneider, P. Bork, D. Brutlag, J. Glasgow, H-W. Mewes, and R. Zimmer
: 95-105, 1999.

View the article.




GETTING HELP

Scientific problems:        Technical problems: