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NUCLEOTIDE SEQUENCES Gene finding and splice sites EasyGene Genes in prokaryotes EasyGene Genes in prokaryotes HMMgene Genes in eukaryotes NetGene2 Intron splice sites in human, C. elegans and A. thaliana DNA NetStart Translation start in vertebrate and A. thaliana DNA Promoter Transcription start sites in vertebrate DNA RNAmmer Ribosomal RNA sub units RNAmmer Ribosomal RNA sub units Analysis of DNA microarray data OligoWiz Design of oligonucleotides for DNA microarrays

AMINO ACID SEQUENCES Protein sorting ChloroP Chloroplast transit peptides and their cleavage sites in plant proteins LipoP Signal peptidase I & II cleavage sites in gram- bacteria SecretomeP Non-classical and leaderless secretion of proteins SignalP Signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences TargetP Subcellular location of proteins: mitochondrial, chloroplastic, secretory pathway, or other Post-translational modifications of proteins NetCGlyc C-mannosylation sites in mammalian proteins NetNGlyc N-linked glycosylation sites in human proteins NetOGlyc O-GalNAc (mucin type) glycosylation sites in mammalian proteins NetPhos Generic phosphorylation sites in eukaryotic proteins ProP Arginine and lysine propeptide cleavage sites in eukaryotic protein sequences YinOYang O-(beta)-GlcNAc glycosylation and Yin-Yang sites (intracellular/nuclear proteins) Immunological features BepiPred Linear B-cell epitopes DiscoTope Discontinuous B-cell epitopes NetChop Proteasomal cleavages (MHC ligands) NetCTL Integrated class I antigen presentation NetCTLpan Pan-specific integrated class I antigen presentation NetMHC Binding of peptides to MHC class I alleles NetMHCII Binding of peptides to MHC class II alleles NetMHCIIpan Pan-specific binding of peptides to MHC class II HLA-DR alleles of known sequence NetMHCpan Pan-specific binding of peptides to MHC class I alleles of known sequence VDJsolver Analysis of human immunoglobulin VDJ recombination Protein function and structure NetSurfP Protein secondary structure and relative solvent accessibility TMHMM Transmembrane helices in proteins