"Chromatin Structure and Gene Experssion in E. coli",
lecture for Roskilde University Bioinformatics course, 21 February, 2005.        PDF file [14 mb]       PDF file for Computer Excercises [0.9 mb]
link to Roskilde Bioinformatics course web page

Articles for lecture.

David W. Ussery, Ulrik de Lichtenberg,. and Lars Juhl Jensen
"Systems Biology - in the broadest sense of the word",
submitted to Environmental Microbiology as "Crystal Ball" article, (January, 2005).        text file

Hanni Wallenbrock and David W. Ussery
"Chromatin architecture and gene expression in Escherichia coli",
Genome Biology 5:252, (2004).         [PubMed]        PDF file         Link to Genome Biology web site

Mark A. Schembri, David Ussery, Chris Workman, Henrik Hasman, and Per Klemm
"DNA Microarray analysis of fim mutations in Escherichia coli",
Molecular Genetics and Genomics, 267:721-729 (2002).     PDF file

David W. Ussery, Thomas S. Larsen, K. Trevor Wilkes, Carsten Friis, Peder Worning, Anders Krogh, and Søren Brunak,
"Genome Organisation and Chromatin Structure in Escherichia coli",
Biochimie, 83:201-212, (2001).
       [PubMed]        PDF file         [cover]
Link to web page with supplemental information about this article.

Anders Gorm Pedersen, Lars Juhl Jensen, Hans-Henrik Stærfeldt, Søren Brunak, and David W. Ussery,
"A DNA Structural Atlas for Escherichia coli",
Journal of Molecular Biology, 299 (#4), 907-930, (2000).
       [PubMed]        PDF file         [Cover]       [Description of cover figure]
Link to Escherichia coli Atlases table

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Articles for Computer Exercises.

Peter F. Hallin and David W. Ussery
"CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data",
Bioinformatics, 20:3682-3686, (2004).         [PubMed]        PDF file

Microbiology "Genome Update" #11 December, 2004
Peter F. Hallin, Tom Coenye, Tim T. Binnewies, Hanne Jarmer, Hans-Henrik Stærfeldt and David W. Ussery
"Genome Update: Correlation of Bacterial Genomic Properties"
Microbiology, 150:3899-3903, (2004).         [PubMed]        PDF file 

Microbiology "Genome Update" #13 February, 2005
Hanni Willenbrock, Tim T. Binnewies, Peter F. Hallin and David W. Ussery
"Genome Update: 2D clustering of bacterial genomes"
Microbiology, 151:333-336, 2005.        PDF file 

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DNA Structural Atlases for Complete Genomes and Chromosomes

References, talks, and posters about DNA Atlases

Dave's Course lecture notes page



Dave's main CBS web page

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CORRESPONDENCE

David W. Ussery: Dave      

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