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Supplementary material for the article:

Improved method for predicting linear B-cell epitopes

The three data sets used in the article are given below in HOW format. An entry in this format consists of the following
  • The sequence length, name and other information
  • The protein sequence in lines of 80 characters each
  • The linear B-cell annotation, where
    a "." denotes a residue that is not annotated as part of an epitope,
    an "E" denotes a residue that is annotated as part of an epitope, and
    an "e" denoes a residue that is annotated as being part of more than one overlapping epitope
Pellequer data set
AntiJen data set
HIV data set

References

Improved method for predicting linear B-cell epitopes
Jens Erik Pontoppidan Larsen, Ole Lund and Morten Nielsen
Immunome Research 2:2, 2006.