288 Integrase FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVA SGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAK LLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED EEEEEEEEEEEEEEEE........EEEEEEEEEEE......EEEEEEEEEEEEEE......................... ......................................................................EEEEEEEEEE EEE...............................................EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE EEEEEEEEEEEEEEEEEEEEEEEeeeeeeeEEE............... 206 sp_P03406_NEF_HV1BR MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMT YKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGE NTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC ..........EEEEeeeeeeEEEE......EEEEEEEEEE........EEEEEEEEEEEeeeeeeeeeeeeeeEEEEEEE ..EEEEEE.............................EEEEEEEEEEEEEEEE..............EEEeeeeeeeEEE eeeeeeeeeeeeeeeeeeeeEEEEEEEEEE...EEEEEEEEEEEEE 99 Protease PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF EEEEEEE..............................EEEEEEEE................................... ................... 560 RT PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF QSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET WWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQ AIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL ................................................................EEEEEEEEE....... ................................................................................ ................................................................................ ........EEEEEEEEEEEEEEE..............................EeeeeeeeeEE................ .............................EEEEE.....................EEEEEEEE................. .........................................EEEEEEEEE.............................. ........................................EEEEEEEEEEE....EEEEEEEEEEEEEE........... 116 sp_P04618_REV_HV1H2 MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLER LTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE .....................................EEEEEE..........................EEeeeeeeeee eeeeEEEEEEE....EEEEEEeeeeEEEEEEEEEEE 86 sp_P04608_TAT_HV1H2 MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGD PTGPKE .EEEEEEEEEEEEE.............................EEEeeeeeeeeeeEEEE...............EEEEE EEEEEE 856 sp_P04578_ENV_HV1H2 MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPN PQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFN ISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCT NVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTI GKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTW STEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWR SELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIE AQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTS LIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTH LPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLL QYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL ........................................EeeeeeeeeeEEEEEEEEEEeEEeeeeeeeEEeeeeeeEE eeeeeeeeeeEEEEEE....EEEEeeeeeeeeeEEEEEEE.EeeeeeeeeeeeeeeeeeeeE.................. .EEEEEEEE.EeeeeeeeeeE..............................EEEEEEEeeeeeeeeEEEEE.....EEEE EEEEE......EEEEEeeeeeE........EEEEEEEEEE.............EEEEEeEeeeeeeeeeeeeeeeeeEEe eeEEEEEE...................................................EEEEEEEEEEEEEE.EEEEEE ...................EEeeEeeeeeeeeeeeeeeE....................EeeeeeeeEE..EEEEEE... .............EEEEeeEEEeeeeeeeEE.............EEEEEEEEEEEEEEEEEEE................. ................EEEEEeeEEEEEE.EeeeeeeeeeeeeeEE.................................. ...EEEEEEEEEEEEEEEEEEeeEEEE..................................................... .....EeeeEEEEEEE..EEEEE......................................................... ........................................................ 132 p17 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYN TVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNY ...........EEEEEeeeeeeEEEEEEEEEEEEEEEE............EEEEEEEEEEEeeeeEEEEEEEEEEEEE.. ...................EEEEEE.......EEEEEEEEeeEEEEEEEEEE 231 p24 PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEW DRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEP FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL ....................EEEEE...................EEEEEE....................EEEEEeeeee eeeeeeeeeeeeeeEEEEEEE...................EEEEEEEEEE............EEEEEE...EEEEeeEEE eEEEEEEEEE................................................EEEEEEEEEEEEE 137 p2p7p1p6 AEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKG RPGNFLQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ EEEEE.............EEEEEEEEEE................EEEEEEEEEE...........EEEEEEEEEEEEeee eEEEEE...................................................