This site contains data sets from the paper

An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes
Henrik Nielsen and Rasmus Wernersson
Submitted, 2006.

Data sets

Please refer to the publication for details about the generation of the data sets.

Genomic data
Homo sapiens	Proteins w. intron phase annotation (13890), in TAB format (details: Virtual Ribosome). Uncompressed: human_build35.cleaned.tab (22mb) Gzip compressed: human_build35.cleaned.tab.gz (4.8mb) Same data (without the long comments) in HOW format (HOW example): Uncompressed: human_build35.cleaned.how (13mb) Gzip compressed: human_build35.cleaned.how.gz (3.5mb)
Mus musculus	Proteins w. intron phase annotation (13928), in TAB format (details: Virtual Ribosome). Uncompressed: mouse_build35.cleaned.tab (22mb) Gzip compressed: mouse_build35.cleaned.tab.gz (5.7mb) Same data (without the long comments) in HOW format (HOW example): Uncompressed: mouse_build35.cleaned.how (14mb) Gzip compressed: mouse_build35.cleaned.how.gz (4.3mb)
Drosophila melanogaster	Proteins w. intron phase annotation (19250), in TAB format (details: Virtual Ribosome). Uncompressed: drosophila_april05.cleaned.tab (38mb) Gzip compressed: drosophila_april05.cleaned.tab.gz (5.5mb) Same data (without the long comments) in HOW format (HOW example): Uncompressed: drosophila_april05.cleaned.how (21mb) Gzip compressed: drosophila_april05.cleaned.how.gz (4.8mb) GO to name mapping list: Uncompressed: drosophila.go_categories.txt (4.8mb) Gzip compressed: drosophila.go_categories.txt.gz (519kb)
GenBank data
Homology reduced data sets	The homology reduced data sets (proteins w. intron phase annotation) are avaiable in both HOW and TAB format. Gzip compressed tar archives of all data are available here: homology_reduc_all.how.tgz (10mb) homology_reduc_all.tab.tgz (9mb). Browse individual subsets Vertebrata Protein count (the same number applies for the corresponding HOW files): 2552 Vertebrata.reduc.nosignal.tab 755 Vertebrata.reduc.signal.tab 3542 Vertebrata.reduc.tab Arthropoda Protein count (the same number applies for the corresponding HOW files): 3202 Arthropoda.reduc.nosignal.tab 769 Arthropoda.reduc.signal.tab 4179 Arthropoda.reduc.tab Fungi Protein count (the same number applies for the corresponding HOW files): 3814 Fungi.reduc.nosignal.tab 431 Fungi.reduc.signal.tab 4525 Fungi.reduc.tab Magnoliophyta Protein count (the same number applies for the corresponding HOW files): 10370 Magnoliophyta.reduc.nosignal.tab 1051 Magnoliophyta.reduc.signal.tab 12751 Magnoliophyta.reduc.tab

CORRESPONDENCE