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Web Services at CBS

The prediction services listed below are available as SOAP-based Web Services. The scientific functionality is the same as that of the corresponding interactive services. In order to view the full documentation and use a Web Service click on the appropriate link in the list below. The general information on the SOAP-based Web Services at CBS is provided on the development page.

Please note that the prediction services for which no SOAP-based Web Services exist are not shown on this page. Activate the 'Services' tab above to view the complete list of services.

Most of the services are also available as stand-alone software packages to install and run at the user's site. Ready-to-ship packages exist for the most common UNIX platforms. Activate the 'Download' tab above to download software.


NUCLEOTIDE SEQUENCES

Whole genome visualization and analysis

 BLASTatlas
Mapping of whole genome homology
  - new version 1.0a - GeneWiz
Visualization of DNA properties
 GenomeAtlas
DNA structural atlases for complete microbial Genomes
 SIDDbase
Calculation of Stress-induced DNA duplex destabilization

Gene finding and splice sites

 EasyGene
Genes in prokaryotes
 RNAmmer
Ribosomal RNA sub units

Miscellaneous

 MaxAlign
Maximizing alignment area

SMALL MOLECULES

 hERG
Cardiotoxicity of drugs
 

AMINO ACID SEQUENCES

Protein sorting

SignalP 
Signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences
SignalP4 
Signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences

Post-translational modifications of proteins

NetGlycate 
Glycation of ε amino groups of lysines in mammalian proteins
NetNGlyc 
N-linked glycosylation sites in human proteins
NetOGlyc 
O-GalNAc (mucin type) glycosylation sites in mammalian proteins
NetPhos 
Generic phosphorylation sites in eukaryotic proteins

Immunological features

NetChop 
Proteasomal cleavages (MHC ligands)
NetCTL 
Integrated class I antigen presentation
NetMHCcons 
Binding of peptides to any known MHC class I molecule

Protein function and structure

EPipe 
Functional differences of protein variants
TMHMM 
Transmembrane helices in proteins