#kingdom phyla pid organism genbank refseq segment ATCONTENT NGENES LENGTH BPPRGENE CODING_FRACTION GEOMETRY RNAMMER_TSU_COUNT RNAMMER_SSU_COUNT RNAMMER_LSU_COUNT GLO_DIR_REPEAT GLO_INV_REPEAT SR_PERCENT ANN_TRNA_COUNT TRNA_SCAN_COUNT TRUE_PROTEINS TRUE_PROT_RATIO X60_ORIGIN X60_TERMINUS ADNACC CURVATURE_AVG ELHASSAN_AVG OLSON_AVG ORNSTEIN_AVG RRRECIEVER_COUNT HISKA_1_COUNT HISKA_2_COUNT HISKA_3_COUNT HISKA_COUNT HWE_HK_COUNT LOC_DIR_REPEAT LOC_EVR_REPEAT LOC_INV_REPEAT LOC_MIR_REPEAT Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000828 NC_009925 Chromosome 0.5275 6254 6503724 1039.9 0.838981 cir 2 2 2 6.5 5 0.2 69 69 3127000 1117000 1.4231 4.8333 113 67 0 3 71 1 3.6 1.7 2.6 2.1 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000838 NC_009926 Plasmid pREB1 0.5265 382 374161 979.5 0.83049 cir 0 0 0 7.2 0.8 0.3 0 0 258000 145000 1.4317 4.8295 2 1 0 0 1 0 4 1.5 2.8 2.2 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000839 NC_009927 Plasmid pREB2 0.5466 408 356087 872.8 0.810897 cir 0 0 0 7 4.9 0.4 0 0 202000 47000 1.5856 4.74174 0 0 0 0 0 0 4 1.9 2.9 2.1 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000840 NC_009928 Plasmid pREB3 0.5481 362 273121 754.5 0.721574 cir 0 0 0 7.9 8.3 0.2 0 0 25000 158000 1.522 4.74218 11 4 0 1 5 0 4.4 1.9 3.7 2.4 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000841 NC_009929 Plasmid pREB4 0.5412 273 226680 830.3 0.838248 cir 0 0 0 0.8 0.1 0.3 0 0 15000 151000 1.4995 4.76653 4 1 0 0 1 0 3.9 2.2 3 2.1 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000842 NC_009930 Plasmid pREB5 0.5532 222 177162 798 0.795041 cir 0 0 0 7.2 1.9 0.5 0 0 124000 30000 1.6087 4.72098 0 0 0 0 0 0 5.3 1.6 3.4 3 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000843 NC_009931 Plasmid pREB6 0.5287 188 172728 918.8 0.795939 cir 0 0 0 10.2 14.3 0.3 0 0 3000 89000 1.7664 4.80786 2 0 0 0 0 0 3.5 1.5 2.8 2.5 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000844 NC_009932 Plasmid pREB7 0.5441 173 155110 896.6 0.818671 cir 0 0 0 7.3 0.2 0.3 0 0 125000 47000 1.5254 4.75595 0 0 0 0 0 0 4.5 2.1 2.9 2.3 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000845 NC_009933 Plasmid pREB8 0.5458 117 120693 1031.6 0.767542 cir 0 0 0 12.6 0.2 0.2 0 0 4000 57000 1.6356 4.7363 0 0 0 0 0 0 5.7 1.8 2.8 2.1 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 CP000846 NC_009934 Plasmid pREB9 0.5748 4 2133 533.2 0.686357 cir 0 0 0 0 0 0 0 0 2000 1000 2.0159 4.62458 0 0 0 0 0 0 5.5 5.7 3.7 0 Bacteria Firmicutes 19259 Acholeplasma laidlawii PG-8A CP000896 NC_010163 Chromosome 0.6807 1380 1496992 1084.8 0.905327 cir 2 2 2 0.6 0.9 0.5 34 36 0 717000 1.4857 4.3411 2 2 0 0 2 0 8.4 4.7 7.4 6.7 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000689 NC_009467 Plasmid pACRY01 0.3767 171 203589 1190.6 0.752172 cir 0 0 0 10.7 32.5 0.2 0 0 128 33.6 57000 118000 0.6548 5.55956 2 2 0 0 2 0 6.7 3.5 4.8 5.1 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000697 NC_009484 Chromosome 0.3201 3063 3389227 1106.5 0.915403 cir 2 2 2 2.7 1.5 1.1 47 48 2741 11.7 1790000 773000 0.5228 5.81588 17 10 0 0 10 0 15.9 7.2 10 9.6 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000690 NC_009468 Plasmid pACRY02 0.3808 169 187422 1109 0.774781 cir 0 0 0 1.9 1 0.4 0 0 129 31 5000 67000 0.7603 5.52726 0 0 0 0 0 0 7.8 3.5 5.3 3.7 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000691 NC_009469 Plasmid pACRY03 0.3787 77 88953 1155.2 0.850775 cir 0 0 0 0 0 0.4 0 0 70 10 3000 32000 0.6116 5.55087 1 1 0 0 1 0 7.7 3.9 4.5 4.1 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000692 NC_009470 Plasmid pACRY04 0.4038 32 37415 1169.2 0.771936 cir 0 0 0 0 0.3 0.6 0 0 26 23.1 4000 17000 1.0878 5.42012 0 0 0 0 0 0 6.6 2.6 4 2 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000693 NC_009471 Plasmid pACRY05 0.3915 28 37155 1327 0.756614 cir 0 0 0 1.4 8.4 0.1 0 0 25 12 11000 33000 0.7321 5.49913 0 0 0 0 0 0 8.4 4.6 4.6 4.4 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000694 NC_009472 Plasmid pACRY06 0.39 9 8781 975.7 0.664275 cir 0 0 0 1.6 0 0.3 0 0 1 800 4000 7000 0.9224 5.42282 0 0 0 0 0 0 8.5 3 5.1 4.7 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000695 NC_009473 Plasmid pACRY07 0.4249 5 5629 1125.8 0.48339 cir 0 0 0 0 0 0.9 0 0 1 400 3000 5000 1.1192 5.3038 0 0 0 0 0 0 12.3 3.2 9.7 6 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 CP000696 NC_009474 Plasmid pACRY08 0.4131 5 4909 981.8 0.510898 cir 0 0 0 0 0 0.6 0 0 1000 3000 0.6315 5.3479 0 0 0 0 0 0 9.9 3.8 4.7 3.6 Bacteria Gammaproteobacteria 53 Acidithiobacillus ferrooxidans ATCC 23270 CP001219 NC_011761 Chromosome 0.4123 3147 2982397 947.7 0.893947 cir 2 2 2 3.6 4 0.3 81 78 1000 1725000 1.0745 5.38788 13 12 0 0 12 0 4.8 2.2 3.2 2.8 Bacteria Other Bacteria 16689 Acidithiobacillus ferrooxidans ATCC 53993 CP001132 NC_011206 Chromosome 0.4115 2826 2885038 1020.9 0.889127 cir 2 2 2 8.1 6.1 0.3 46 46 16000 1576000 1.0838 5.38774 13 12 0 0 12 0 4.6 2.2 3.2 2.8 Bacteria Acidobacteria 15771 Acidobacteria bacterium Ellin345 CP000360 NC_008009 Chromosome 0.4162 4777 5650368 1182.8 0.893213 cir 1 1 1 1.3 1 0.3 47 47 3993 19.6 929000 2625000 1.0813 5.38614 107 48 0 9 57 0 5.1 2.1 2.7 3.1 Bacteria Actinobacteria 16097 Acidothermus cellulolyticus 11B CP000481 NC_008578 Chromosome 0.3309 2157 2443540 1132.8 0.896955 cir 1 1 1 0.8 0.4 0.7 46 46 1917 12.5 2000 1244000 0.6271 5.76604 27 9 1 3 13 0 10.7 5.1 6.9 6.3 Bacteria Betaproteobacteria 15708 Acidovorax avenae subsp. citrulli AAC00-1 CP000512 NC_008752 Chromosome 0.3147 4709 5352772 1136.7 0.890978 cir 3 3 3 6.6 4.6 1 53 53 3972 18.6 5293000 3025000 0.7503 5.79716 64 46 0 4 50 0 13.6 7.2 8.9 8.3 Bacteria Betaproteobacteria 15685 Acidovorax sp. JS42 CP000540 NC_008765 Plasmid pAOVO01 0.3779 84 72689 865.3 0.850899 cir 0 0 0 3.1 0.3 0.5 0 0 49 71.4 29000 57000 0.9396 5.51515 1 0 0 0 0 0 6.7 3.9 5 3.5 Bacteria Betaproteobacteria 15685 Acidovorax sp. JS42 CP000539 NC_008782 Chromosome 0.3383 4007 4448856 1110.3 0.877816 cir 3 3 3 8.5 6.4 0.8 51 51 3447 16.2 4429000 2121000 0.5521 5.71141 40 22 0 3 25 0 11.5 5.3 7.4 6 Bacteria Betaproteobacteria 15685 Acidovorax sp. JS42 CP000541 NC_008766 Plasmid pAOVO02 0.3542 64 63609 993.9 0.835338 cir 0 0 0 12.4 0.8 1.2 0 0 53 20.8 5000 46000 1.0282 5.61551 0 0 0 0 0 0 11.6 4.4 6.1 6.3 Bacteria Gammaproteobacteria 21111 Acinetobacter baumannii AB0057 CP001182 NC_011586 Chromosome 0.6079 3790 4050513 1068.7 0.853867 cir 6 6 6 4.7 2.8 0.3 73 73 25000 2150000 1.0422 4.62094 21 15 0 0 15 0 5.6 3.4 5.1 4 Bacteria Gammaproteobacteria 21111 Acinetobacter baumannii AB0057 CP001183 NC_011585 Plasmid pAB0057 0.6562 11 8729 793.5 0.74957 cir 0 0 0 1 0 0.6 0 0 0 3000 1.054 4.39031 0 0 0 0 0 0 10.2 6 9.4 4.4 Bacteria Gammaproteobacteria 30993 Acinetobacter baumannii AB307-0294 CP001172 NC_011595 Chromosome 0.6096 3458 3760981 1087.6 0.860921 cir 6 6 6 2.9 1.9 0.3 73 73 3744000 1860000 1.0256 4.61583 21 16 0 0 16 0 5.7 3.4 5.1 4.1 Bacteria Gammaproteobacteria 17827 Acinetobacter baumannii ACICU CP000863 NC_010611 Chromosome 0.6097 3667 3904116 1064.7 0.872183 cir 6 6 6 2.4 2.4 0.3 64 64 7000 1932000 1.0314 4.61369 19 14 0 0 14 0 5.6 3.4 5.1 4 Bacteria Gammaproteobacteria 17827 Acinetobacter baumannii ACICU CP000864 NC_010605 Plasmid pACICU1 0.6216 28 28279 1010 0.680187 cir 0 0 0 34 13.8 0.4 0 0 12000 21000 1.6868 4.54787 0 0 0 0 0 0 5.7 3.9 6.1 3.6 Bacteria Gammaproteobacteria 17827 Acinetobacter baumannii ACICU CP000865 NC_010606 Plasmid pACICU2 0.666 64 64366 1005.7 0.756595 cir 0 0 0 3.7 0 0.3 0 0 40000 6000 1.8768 4.35678 0 0 0 0 0 0 8.1 4.4 7.3 6.2 Bacteria Gammaproteobacteria 17477 Acinetobacter baumannii ATCC 17978 CP000522 NC_009083 Plasmid pAB1 0.6384 11 13408 1218.9 0.566229 cir 0 0 0 0.6 0 0.4 0 0 8 37.5 11000 6000 1.6557 4.44088 0 0 0 0 0 0 10.7 4.2 8.1 4.2 Bacteria Gammaproteobacteria 17477 Acinetobacter baumannii ATCC 17978 CP000521 NC_009085 Chromosome 0.6106 3352 3976747 1186.4 0.717833 cir 5 5 5 1.7 2.3 0.3 69 70 3007 11.5 1000 2031000 1.0661 4.61079 20 15 0 0 15 0 5.6 3.4 5.2 4.1 Bacteria Gammaproteobacteria 17477 Acinetobacter baumannii ATCC 17978 CP000523 NC_009084 Plasmid pAB2 0.6482 5 11302 2260.4 0.535657 cir 0 0 0 0.8 0 0.4 0 0 5 0 0 7000 0.9113 4.42088 0 0 0 0 0 0 8.7 5.6 8.9 8.4 Bacteria Gammaproteobacteria 28921 Acinetobacter baumannii AYE CU459141 NC_010410 Chromosome CU459141 0.6062 3659 3936291 1075.8 0.87468 cir 6 6 6 4.4 2.7 0.3 72 72 3918000 1899000 1.0293 4.62909 22 17 0 0 17 0 5.6 3.4 5.1 4 Bacteria Gammaproteobacteria 28921 Acinetobacter baumannii AYE CU459137 NC_010401 Plasmid p1ABAYE 0.6549 7 5644 806.3 0.776577 cir 0 0 0 0 0 0.5 0 0 4000 2000 2.0553 4.38097 0 0 0 0 0 0 8.7 4.2 5.2 7.6 Bacteria Gammaproteobacteria 28921 Acinetobacter baumannii AYE CU459138 NC_010402 Plasmid p2ABAYE 0.656 11 9661 878.3 0.728289 cir 0 0 0 0.9 0 0.5 0 0 0 4000 1.6561 4.4073 0 0 0 0 0 0 10.1 5.5 9 3.6 Bacteria Gammaproteobacteria 28921 Acinetobacter baumannii AYE CU459139 NC_010403 Plasmid p4ABAYE 0.624 5 2726 545.2 0.840792 cir 0 0 0 0 0 0 0 0 2000 1000 1.3573 4.48477 0 0 0 0 0 0 3.4 1.1 11.7 2.3 Bacteria Gammaproteobacteria 28921 Acinetobacter baumannii AYE CU459140 NC_010404 Plasmid p3ABAYE 0.6252 107 94413 882.4 0.816921 cir 0 0 0 3.9 3.3 0.4 0 0 12000 47000 1.4818 4.5232 0 0 0 0 0 0 5.6 4 5.2 4.3 Bacteria Gammaproteobacteria 13001 Acinetobacter baumannii SDF CU468230 NC_010400 Chromosome CU468230 0.6081 3511 3421954 974.6 0.871519 cir 5 5 5 13.2 13.3 0.3 64 64 0 1822000 0.9545 4.61845 13 8 0 0 8 0 5.2 2.9 5 3.5 Bacteria Gammaproteobacteria 13001 Acinetobacter baumannii SDF CU468231 NC_010395 Plasmid p1ABSDF 0.6546 8 6106 763.2 0.822142 cir 0 0 0 1.4 0 1.2 0 0 5000 1000 3.2427 4.39348 0 0 0 0 0 0 9.1 3.2 7.2 5.9 Bacteria Gammaproteobacteria 13001 Acinetobacter baumannii SDF CU468232 NC_010396 Plasmid p2ABSDF 0.6511 32 25014 781.7 0.787999 cir 0 0 0 10.1 0 0.1 0 0 22000 13000 2.0988 4.41042 0 0 0 0 0 0 9.1 4.2 7.4 7.2 Bacteria Gammaproteobacteria 13001 Acinetobacter baumannii SDF CU468233 NC_010398 Plasmid p3ABSDF 0.656 26 24922 958.5 0.773654 cir 0 0 0 5.4 1.4 0.1 0 0 7000 15000 1.7735 4.38536 0 0 0 0 0 0 8.7 4.4 5.5 6.5 Bacteria Gammaproteobacteria 12352 Acinetobacter sp. ADP1 CR543861 NC_005966 Chromosome 0.5957 3325 3598621 1082.3 0.878036 cir 7 7 7 2.3 1.8 0.3 76 76 2859 16.3 0 1870000 0.8434 4.7105 20 16 0 0 16 0 4.8 2.6 4.4 3.4 Bacteria Gammaproteobacteria 18221 Actinobacillus pleuropneumoniae L20 CP000569 NC_009053 Chromosome 0.587 2012 2274482 1130.5 0.863262 cir 7 9 6 4.1 3 0.4 62 62 1932 4.1 1894000 736000 1.245 4.76654 6 4 0 1 5 0 5.6 2.9 4.8 4 Bacteria Gammaproteobacteria 19135 Actinobacillus pleuropneumoniae serovar 3 str. JL03 CP000687 NC_010278 Chromosome 0.5877 2036 2242062 1101.2 0.856546 cir 7 6 6 3.8 2.8 0.4 63 63 1854000 689000 1.2342 4.76334 6 4 0 1 5 0 5.5 2.9 4.8 4.1 Bacteria Gammaproteobacteria 29909 Actinobacillus pleuropneumoniae serovar 7 str. AP76 CP001091 NC_010939 Chromosome 0.5879 2131 2331981 1094.3 0.878743 cir 7 6 6 5.4 2.9 0.4 62 62 1917000 762000 1.2422 4.76125 6 4 0 1 5 0 5.6 2.8 4.8 4.1 Bacteria Gammaproteobacteria 29909 Actinobacillus pleuropneumoniae serovar 7 str. AP76 CP001092 NC_010940 Plasmid APP7_C 0.5828 2 3533 1766.5 0.483725 cir 0 0 0 0 0 0 0 0 3000 1000 4.2174 4.60943 0 0 0 0 0 0 3.1 3.2 8.3 6.1 Bacteria Gammaproteobacteria 29909 Actinobacillus pleuropneumoniae serovar 7 str. AP76 CP001093 NC_010941 Plasmid ABB7_B 0.5191 4 4236 1059 0.750708 cir 0 0 0 0 0 0 0 0 2000 0 1.8178 4.92491 0 0 0 0 0 0 0 4.1 6.4 3.7 Bacteria Gammaproteobacteria 29909 Actinobacillus pleuropneumoniae serovar 7 str. AP76 CP001094 NC_010942 Plasmid APP7_A 0.5849 5 5685 1137 0.510818 cir 0 0 0 0 0 0 0 0 0 2000 2.6737 4.67956 0 0 0 0 0 0 3.3 3.7 7.6 4.3 Bacteria Gammaproteobacteria 13370 Actinobacillus succinogenes 130Z CP000746 NC_009655 Chromosome 0.5508 2079 2319663 1115.8 0.878491 cir 7 6 6 2.5 1.9 0.3 60 60 1996 4.2 385000 1545000 1.1428 4.94044 6 4 0 1 5 0 4.9 2.5 4.1 3.3 Bacteria Gammaproteobacteria 16697 Aeromonas hydrophila subsp. hydrophila ATCC 7966 CP000462 NC_008570 Chromosome 0.3845 4122 4744448 1151 0.87238 cir 11 10 10 3 1.9 0.7 128 128 3728 10.6 4735000 2492000 1.28 5.42823 67 32 0 2 34 0 8.9 3 5 3.7 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 CP000644 NC_009348 Chromosome 0.4149 4086 4702402 1150.9 0.822424 cir 10 9 9 5.6 3.6 0.4 110 110 3568 14.5 4665000 2132000 1.3689 5.3119 48 23 0 2 25 0 6.1 2.1 3.8 2.6 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 AY301063 NC_004923 Plasmid pAsa1 0.4298 8 5424 678 0.719948 cir 0 0 0 0 0 0 0 0 4000 2000 0.8296 5.24781 0 0 0 0 0 0 5.4 1.2 4.6 1.3 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 AY301064 NC_004925 Plasmid pAsa2 0.478 7 5247 749.6 0.657519 cir 0 0 0 0 0 0 0 0 3000 0 1.8296 5.03589 0 0 0 0 0 0 7.3 1.9 2.7 1.2 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 AY301065 NC_004924 Plasmid pAsa3 0.4548 9 5616 624 0.798967 cir 0 0 0 0 0 0 0 0 4000 1000 1.3355 5.14746 0 0 0 0 0 0 3.9 1.7 4.2 1.7 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 CP000645 NC_009349 Plasmid pAsa4 0.472 173 166749 963.9 0.816389 cir 0 0 0 4.4 2.9 0.2 0 0 112 54.5 22000 77000 1.7523 5.09441 0 0 0 0 0 0 4.1 1.7 3.3 1.8 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 CP000646 NC_009350 Plasmid pAsa5 0.4567 154 155098 1007.1 0.741944 cir 0 0 0 19.2 9.2 0.3 0 0 111 38.7 48000 136000 1.5442 5.16381 0 0 0 0 0 0 5.2 2.1 3.6 2.7 Archaea Crenarchaeota 211 Aeropyrum pernix K1 BA000002 NC_000854 Chromosome 0.4369 1700 1669696 982.2 0.883646 cir 0 1 1 0.8 0.7 0.5 47 50 1394 22 445000 966000 3.1655 4.98696 0 0 0 0 0 0 5.9 2 3.2 3.3 Bacteria Alphaproteobacteria 13402 Agrobacterium radiobacter K84 CP000628 NC_011985 Chromosome 1 0.3966 3744 4005130 1069.7 0.86115 cir 3 3 3 1.2 1.4 0.4 51 52 1000 1985000 0.9423 5.47782 33 18 0 1 21 2 6.4 2.7 4.3 3.3 Bacteria Alphaproteobacteria 13402 Agrobacterium radiobacter K84 CP000630 NC_011990 Plasmid pAtK84b 0.4101 176 184668 1049.2 0.895629 cir 0 0 0 2.4 1 0.3 0 0 72000 179000 1.1821 5.39586 0 0 0 0 0 0 3.6 2.4 3.2 2.8 Bacteria Alphaproteobacteria 13402 Agrobacterium radiobacter K84 CP000629 NC_011983 Chromosome 2 0.4024 2363 2650913 1121.8 0.889214 cir 0 0 0 2.1 1.5 0.3 0 0 28000 1751000 0.9314 5.45348 26 15 0 1 16 0 5.3 2.4 3.8 2.8 Bacteria Alphaproteobacteria 13402 Agrobacterium radiobacter K84 CP000631 NC_011987 Plasmid pAtK84c 0.4299 366 388169 1060.6 0.861411 cir 0 0 0 3.7 0.1 0.2 0 0 365000 94000 1.0776 5.32355 0 0 0 0 0 0 3.5 1.8 3 2.4 Bacteria Alphaproteobacteria 13402 Agrobacterium radiobacter K84 CP000632 NC_011994 Plasmid pAgK84 0.4646 35 44420 1269.1 0.845295 cir 0 0 0 0 0 0.1 0 0 31000 9000 1.1009 5.16352 0 0 0 0 0 0 3.8 2.2 2.8 2.5 Bacteria Alphaproteobacteria 283 Agrobacterium tumefaciens str. C58 AE007869 NC_003062 Chromosome circular 0.4062 2722 2841581 1043.9 0.889797 cir 2 2 2 0.8 1.1 0.4 39 40 2268 20 0 1479000 1.1295 5.45081 34 21 1 0 24 2 5.7 2.5 4.2 3 Bacteria Alphaproteobacteria 283 Agrobacterium tumefaciens str. C58 AE007870 NC_003063 Chromosome linear 0.4072 1834 2074782 1131.3 0.909432 lin 2 2 2 2.3 1.2 0.4 13 13 1611 13.8 1.0067 5.44848 16 9 0 0 11 2 5.3 2.4 4 2.8 Bacteria Alphaproteobacteria 283 Agrobacterium tumefaciens str. C58 AE007872 NC_003064 Plasmid At 0.4267 547 542869 992.4 0.852486 cir 0 0 0 1.8 0.5 0.2 0 0 428 27.8 80000 459000 1.1213 5.34012 4 1 1 1 6 3 3.5 1.8 2.7 2.2 Bacteria Alphaproteobacteria 283 Agrobacterium tumefaciens str. C58 AE007871 NC_003065 Plasmid Ti 0.4333 198 214233 1082 0.861501 cir 0 0 0 1 0.2 0.2 0 0 166 19.3 58000 129000 1.3779 5.29726 1 1 0 0 1 0 3.7 2.4 3.1 2.3 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000633 NC_011989 Chromosome 1 0.4234 3234 3726375 1152.2 0.8483 cir 2 2 2 2.6 2.1 0.3 47 47 3726000 2020000 0.8566 5.37052 38 18 3 0 23 2 5.3 2.1 3.8 2.4 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000635 NC_011991 Plasmid pAtS4b 0.4377 107 130435 1219 0.864185 cir 0 0 0 6.6 0 0.4 0 0 81000 123000 1.3969 5.26962 0 0 0 0 0 0 3.2 1.9 2.3 2.2 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000634 NC_011988 Chromosome 2 0.4248 1054 1283187 1217.4 0.883729 cir 2 2 2 2 0.5 0.3 7 7 673000 56000 0.8424 5.37349 14 12 1 1 18 4 4.6 1.9 3.7 2.2 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000636 NC_011984 Plasmid pAtS4c 0.4138 178 211620 1188.9 0.778825 cir 0 0 0 2 5.4 0.2 0 0 32000 116000 1.0292 5.38564 3 2 1 0 5 2 3.7 2.3 3.4 2.3 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000637 NC_011982 Plasmid pTiS4 0.4334 205 258824 1262.6 0.745951 cir 0 0 0 12 9.4 0.3 0 0 185000 25000 1.1185 5.30442 1 1 0 0 1 0 3.5 2 2.8 2.9 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000638 NC_011981 Plasmid pAtS4e 0.4343 529 631775 1194.3 0.872683 cir 0 0 0 2.2 1.3 0.3 0 0 134000 328000 0.869 5.33256 1 1 0 0 1 0 3.6 1.7 2.9 2.1 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 CP000639 NC_011986 Plasmid pAtS4a 0.4324 82 78730 960.1 0.846691 cir 0 0 0 2 3.4 0.2 0 0 53000 16000 1.34 5.29269 1 0 0 0 0 0 5.1 2 3.5 2.1 Bacteria Other Bacteria 20089 Akkermansia muciniphila ATCC BAA-835 CP001071 NC_010655 Chromosome 0.4424 2138 2664102 1246.1 0.870481 cir 3 3 3 1.7 2.2 0.3 53 53 959000 2308000 3.6937 5.20517 5 4 0 0 4 0 5.4 2 3.4 2.7 Bacteria Gammaproteobacteria 13005 Alcanivorax borkumensis SK2 AM286690 NC_008260 Chromosome 0.4527 2755 3120143 1132.5 0.874377 cir 3 3 3 1.1 0.8 0.3 42 42 2501 10.2 3118000 1502000 1.1204 5.21135 40 22 0 0 22 0 3.7 1.6 2.6 2.1 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 FM178379 NC_011312 Chromosome 1 0.6077 3069 3325165 1083.5 0.868277 cir 12 11 11 11.6 12.6 0.3 92 91 3190000 1670000 1.6518 4.62709 25 12 0 1 13 0 4.4 2.6 4.2 3.2 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 FM178380 NC_011313 Chromosome 2 0.6176 1105 1206461 1091.8 0.876935 cir 1 1 1 14.1 11.2 0.3 13 13 111000 685000 1.6429 4.60788 19 9 0 0 9 0 4.6 2.9 4.4 3.5 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 FM178382 NC_011314 Plasmid pVSAL320 0.6271 32 30807 962.7 0.74772 cir 0 0 0 10.2 14.9 0.4 0 0 18000 28000 1.4769 4.56406 0 0 0 0 0 0 7.8 3.7 6.2 3.4 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 FM178381 NC_011311 Plasmid pVSAL840 0.5993 72 83540 1160.3 0.851101 cir 0 0 0 0.2 0 0.3 0 0 29000 0 2.1977 4.64362 0 0 0 0 0 0 5.4 3.2 5.3 4.2 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 FM178383 NC_011315 Plasmid pVAL43 0.619 3 5360 1786.7 0.659888 cir 0 0 0 0 0 0 0 0 2000 0 2.1642 4.55322 0 0 0 0 0 0 4.1 2.1 5.6 3.7 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 FM178384 NC_011316 Plasmid pVSAL43 0.6439 3 4327 1442.3 0.625376 cir 0 0 0 2.1 0 0.6 0 0 3000 1000 1.7795 4.48176 0 0 0 0 0 0 12 3.8 6.9 2.9 Bacteria Gammaproteobacteria 15763 Alkalilimnicola ehrlichei MLHE-1 CP000453 NC_008340 Chromosome 0.3247 2865 3275944 1143.4 0.903813 cir 2 2 2 3.6 2.7 0.8 48 48 2562 11.8 16000 1610000 0.7857 5.68042 33 17 0 3 20 0 11.6 6 7.3 6.8 Bacteria Firmicutes 13006 Alkaliphilus metalliredigens QYMF CP000724 NC_009633 Chromosome 0.6318 4625 4929566 1065.9 0.828704 cir 11 10 10 8.1 7.5 0.4 106 106 0 2577000 3.4059 4.44728 64 36 1 5 42 0 6.3 2.9 4.6 4.8 Bacteria Firmicutes 16083 Alkaliphilus oremlandii OhILAs CP000853 NC_009922 Chromosome 0.6374 2836 3123558 1101.4 0.843441 cir 9 8 8 3.3 2.6 0.4 86 86 0 1658000 3.4561 4.42922 37 22 0 1 23 0 6.7 3.5 5.2 5.4 Bacteria Gammaproteobacteria 13374 Alteromonas macleodii Deep ecotype CP001103 NC_011138 Chromosome 0.5512 4072 4412282 1083.6 0.860893 cir 6 5 5 2.6 2 0.2 40 43 26000 2217000 1.217 4.81511 74 34 0 3 38 1 3.2 1.8 2.8 2.3 Bacteria Cyanobacteria 10642 Anabaena variabilis ATCC 29413 CP000117 NC_007413 Chromosome 0.5858 5039 6365727 1263.3 0.815887 cir 4 4 4 5.6 4.3 0.7 47 47 4132 22 416000 4350000 1.4047 4.63586 118 92 3 1 96 0 5.4 2.6 4.4 3.2 Bacteria Cyanobacteria 10642 Anabaena variabilis ATCC 29413 CP000119 NC_007410 Plasmid A 0.5947 344 366354 1065 0.853145 cir 0 0 0 5.8 2.8 0.3 0 0 222 55 343000 195000 1.4355 4.60254 3 2 0 0 2 0 5.1 2.7 4 3.2 Bacteria Cyanobacteria 10642 Anabaena variabilis ATCC 29413 CP000120 NC_007411 Plasmid B 0.615 31 35762 1153.6 0.862787 cir 0 0 0 1.4 0 0.4 0 0 22 40.9 23000 34000 1.2583 4.5123 0 0 0 0 0 0 5.8 2.3 4 3.7 Bacteria Cyanobacteria 10642 Anabaena variabilis ATCC 29413 CP000121 NC_007412 Plasmid C 0.5805 243 300758 1237.7 0.863438 cir 0 0 0 0.8 0.7 0.3 0 0 178 36.5 113000 23000 1.6342 4.65725 4 1 0 1 2 0 4.9 2.4 3.6 3.1 Bacteria Firmicutes 29407 Anaerocellum thermophilum DSM 6725 CP001393 NC_012034 Chromosome 0.6483 2654 2919718 1100.1 0.854742 cir 3 3 3 8.9 5.3 0.6 47 47 1000 1469000 3.9862 4.37567 25 6 0 0 6 0 8.9 4 5.5 6.4 Bacteria Firmicutes 29407 Anaerocellum thermophilum DSM 6725 CP001394 NC_012036 Plasmid pATHE01 0.6146 8 8291 1036.4 0.564588 cir 0 0 0 0 0 0.3 0 0 1000 6000 4.2214 4.44744 0 0 0 0 0 0 14.3 3.9 8.3 7.6 Bacteria Firmicutes 29407 Anaerocellum thermophilum DSM 6725 CP001395 NC_012037 Plasmid pATHE02 0.5708 4 3653 913.2 0.538735 cir 0 0 0 0 0 0.7 0 0 1000 2000 3.9146 4.62924 0 0 0 0 0 0 9.6 0.8 7.3 6.1 Bacteria Deltaproteobacteria 20095 Anaeromyxobacter dehalogenans 2CP-1 CP001359 NC_011891 Chromosome 0.2528 4473 5029329 1124.4 0.901807 cir 2 2 2 3.4 2.9 1.9 49 49 2000 2539000 0.6502 6.0297 108 72 0 2 74 0 27.1 18.7 19.4 21.4 Bacteria Deltaproteobacteria 12634 Anaeromyxobacter dehalogenans 2CP-C CP000251 NC_007760 Chromosome 0.2509 4346 5013479 1153.6 0.908479 cir 2 2 2 2.4 2.2 2 49 49 3811 14 3425000 1901000 0.6384 6.03599 107 71 0 2 73 0 27.9 19.6 19.9 22.2 Bacteria Deltaproteobacteria 17729 Anaeromyxobacter sp. Fw109-5 CP000769 NC_009675 Chromosome 0.2647 4466 5277990 1181.8 0.898234 cir 2 2 2 4.3 2.9 1.7 49 49 3864 15.6 0 2438000 1.0542 5.94861 122 85 0 2 87 0 22.6 15.2 17.2 17.2 Bacteria Deltaproteobacteria 19743 Anaeromyxobacter sp. K CP001131 NC_011145 Chromosome 0.2516 4457 5061632 1135.7 0.904343 cir 2 2 2 3 2.8 1.9 49 49 15000 2471000 0.6315 6.03598 110 73 0 2 75 0 27.3 18.9 19.6 21.9 Bacteria Alphaproteobacteria 16369 Anaplasma marginale str. Florida CP001079 NC_012026 Chromosome 0.5023 942 1202435 1276.5 0.854777 cir 1 1 1 5.6 4.5 0.2 37 37 1142000 531000 1.7207 4.97493 4 3 0 0 3 0 3.7 1.2 1.6 2 Bacteria Alphaproteobacteria 40 Anaplasma marginale str. St. Maries CP000030 NC_004842 Chromosome 0.5024 949 1197687 1262.1 0.852843 cir 1 1 1 5.6 4.8 0.2 37 37 854 11.1 1140000 532000 1.7054 4.97463 4 3 0 0 3 0 3.6 1.2 1.6 2.1 Bacteria Alphaproteobacteria 336 Anaplasma phagocytophilum HZ CP000235 NC_007797 Chromosome 0.5836 1264 1471282 1164 0.681373 cir 1 1 1 12.5 10.5 0.2 37 37 847 49.2 1468000 724000 2.0787 4.62613 4 3 0 0 3 0 3.9 1.7 2.1 3 Bacteria Firmicutes 28245 Anoxybacillus flavithermus WK1 CP000922 NC_011567 Chromosome 0.5822 2832 2846746 1005.2 0.877862 cir 8 8 8 6.3 4.7 0.4 77 77 1000 1431000 3.4917 4.81295 23 14 0 4 18 0 5.8 2.6 4.3 4.1 Bacteria Aquificae 215 Aquifex aeolicus VF5 AE000657 NC_000918 Chromosome 0.5652 1522 1551335 1019.3 0.928679 cir 2 2 2 1.2 1.3 0.5 44 44 1476 3.1 620000 135000 7.8565 4.51125 4 4 0 0 4 0 6.3 2.6 2.5 4.8 Bacteria Aquificae 215 Aquifex aeolicus VF5 AE000667 NC_001880 Plasmid ece1 0.6356 31 39456 1272.8 0.534089 cir 0 0 0 2.3 5.1 0.4 0 0 31 0 32000 13000 8.1052 4.26 0 0 0 0 0 0 11.7 4.1 7 7.4 Archaea Euryarchaeota 104 Archaeoglobus fulgidus DSM 4304 AE000782 NC_000917 Chromosome 0.5142 2407 2178400 905 0.90831 cir 0 1 1 2.1 1.9 0.5 46 46 2291 5.1 1682000 539000 5.0864 4.77544 11 13 0 0 13 0 5.1 1.8 2.2 3.2 Bacteria Epsilonproteobacteria 16319 Arcobacter butzleri RM4018 CP000361 NC_009850 Chromosome 0.7295 2259 2341251 1036.4 0.929632 cir 5 5 5 3.3 2.9 1.1 54 54 14000 1326000 3.0831 4.09978 42 10 2 0 12 0 18.6 10.3 12.6 15.1 Bacteria Betaproteobacteria 13242 Aromatoleum aromaticum EbN1 CR555306 NC_006513 Chromosome 0.3488 4128 4296230 1040.8 0.907777 cir 4 4 4 6.7 5.8 0.7 58 58 3321 24.3 1791000 3689000 0.6165 5.69989 56 28 0 6 34 0 10.1 5.6 7.2 6.4 Bacteria Betaproteobacteria 13242 Aromatoleum aromaticum EbN1 CR555307 NC_006823 Plasmid 1 0.4237 274 207355 756.8 0.8926 cir 0 0 0 4.5 0.8 0.3 0 0 155 76.8 66000 164000 1.7048 5.282 0 0 0 0 0 0 4.9 2.5 3.8 2.9 Bacteria Betaproteobacteria 13242 Aromatoleum aromaticum EbN1 CR555308 NC_006824 Plasmid 2 0.3689 196 223670 1141.2 0.849658 cir 0 0 0 9.4 19.8 0.4 0 0 173 13.3 46000 197000 0.8933 5.55844 0 0 0 0 0 0 7.2 3.8 5.1 4.3 Bacteria Actinobacteria 12512 Arthrobacter aurescens TC1 CP000475 NC_008712 Plasmid TC1 0.3536 292 328237 1124.1 0.858605 cir 0 0 0 10 0.9 0.6 0 0 214 36.4 42000 150000 0.7467 5.58629 0 0 0 0 0 0 8 4.4 5.5 5.2 Bacteria Actinobacteria 12512 Arthrobacter aurescens TC1 CP000474 NC_008711 Chromosome 0.3766 4041 4597686 1137.8 0.880692 cir 6 6 6 2.4 2.2 0.4 54 54 3442 17.4 4000 2423000 0.7725 5.48647 22 10 1 5 16 0 6 2.8 4.3 3.6 Bacteria Actinobacteria 12512 Arthrobacter aurescens TC1 CP000476 NC_008713 Plasmid TC2 0.3865 254 300725 1184 0.783812 cir 0 0 0 2.6 0.3 0.3 0 0 206 23.3 133000 296000 0.8879 5.42861 1 0 0 0 0 0 5.1 2.8 4 3.5 Bacteria Actinobacteria 20011 Arthrobacter chlorophenolicus A6 CP001341 NC_011886 Chromosome 0.3372 3885 4395537 1131.4 0.892445 cir 5 5 5 2.2 1.9 0.6 49 49 2183000 4306000 0.7071 5.63954 26 12 1 6 19 0 9.2 4.8 6.3 5.6 Bacteria Actinobacteria 20011 Arthrobacter chlorophenolicus A6 CP001342 NC_011879 Plasmid pACHL01 0.3563 554 426858 770.5 0.875804 cir 0 0 0 1.3 0.7 0.5 39 39 199000 327000 0.8902 5.53908 0 0 0 0 0 0 6.7 3.1 4.7 4.4 Bacteria Actinobacteria 20011 Arthrobacter chlorophenolicus A6 CP001343 NC_011881 Plasmid pACHL02 0.3868 151 158475 1049.5 0.824736 cir 0 0 0 0.9 2.2 0.3 0 0 115000 61000 1.0538 5.41601 0 0 0 0 0 0 4.9 2.4 4.4 3.6 Bacteria Actinobacteria 12640 Arthrobacter sp. FB24 CP000455 NC_008537 Plasmid 1 0.3497 158 159538 1009.7 0.844739 cir 0 0 0 1.6 2.1 0.6 0 0 117 35 122000 12000 0.9114 5.58165 1 1 0 0 1 0 8.3 4 5.2 5.1 Bacteria Actinobacteria 12640 Arthrobacter sp. FB24 CP000454 NC_008541 Chromosome 1 0.3453 4146 4698945 1133.4 0.894747 cir 5 5 5 2.5 2 0.6 51 51 3568 16.2 4667000 2490000 0.7029 5.61201 27 13 1 6 20 0 8.2 4.4 5.8 5.1 Bacteria Actinobacteria 12640 Arthrobacter sp. FB24 CP000456 NC_008538 Plasmid 2 0.3668 108 115507 1069.5 0.862043 cir 0 0 0 0.8 0.2 0.5 0 0 85 27.1 3000 82000 0.896 5.5247 0 0 0 0 0 0 6.7 3.3 4.9 4.4 Bacteria Actinobacteria 12640 Arthrobacter sp. FB24 CP000457 NC_008539 Plasmid 3 0.3533 94 96488 1026.5 0.857081 cir 0 0 0 0.6 0.4 0.5 0 0 84 11.9 15000 81000 0.8219 5.57225 0 0 0 0 0 0 8 4 5.1 5.2 Bacteria Firmicutes 13478 Aster yellows witches-broom phytoplasma AYWB CP000061 NC_007716 Chromosome 0.7311 671 706569 1053 0.735369 cir 2 2 2 19.6 18.1 1.6 31 32 483 38.9 705000 446000 3.8267 4.12496 0 0 0 0 0 0 24.5 14.4 16.6 22.6 Bacteria Firmicutes 13478 Aster yellows witches-broom phytoplasma AYWB CP000062 NC_007717 Plasmid pAYWB-I 0.744 5 3972 794.4 0.751511 cir 0 0 0 0 0 2.8 0 0 2 150 1000 2000 3.1722 4.11496 0 0 0 0 0 0 26.2 18.6 21.9 14.1 Bacteria Firmicutes 13478 Aster yellows witches-broom phytoplasma AYWB CP000063 NC_007718 Plasmid pAYWB-II 0.7605 4 4009 1002.2 0.603143 cir 0 0 0 0 0 0.6 0 0 2 100 4000 2000 2.1951 4.05215 0 0 0 0 0 0 30.3 22.9 25.8 25.1 Bacteria Firmicutes 13478 Aster yellows witches-broom phytoplasma AYWB CP000064 NC_007719 Plasmid pAYWB-III 0.7823 7 5104 729.1 0.651254 cir 0 0 0 2.1 0 2.1 0 0 4 75 4000 2000 4.6826 3.96271 0 0 0 0 0 0 32.2 25.6 29.7 33.7 Bacteria Firmicutes 13478 Aster yellows witches-broom phytoplasma AYWB CP000065 NC_007720 Plasmid pAYWB-IV 0.7565 6 4316 719.3 0.761353 cir 0 0 0 0 0 1.8 0 0 2 200 4000 2000 1.7841 4.06674 0 0 0 0 0 0 24.9 14 20.3 23.2 Bacteria Betaproteobacteria 13217 Azoarcus sp. BH72 AM406670 NC_008702 Chromosome 0.3208 3989 4376040 1097 0.912308 cir 4 4 4 2.7 2.2 0.9 56 55 3521 13.3 105000 2172000 0.6659 5.79488 79 46 0 5 51 0 13.6 7.6 9 8.7 Bacteria Alphaproteobacteria 19267 Azorhizobium caulinodans ORS 571 AP009384 NC_009937 Chromosome 0.3268 4717 5369772 1138.4 0.898527 cir 3 3 3 2.5 2.4 0.7 53 53 5327000 2592000 1.0665 5.72444 60 35 2 0 39 2 11.2 5.6 7.2 6.6 Bacteria Firmicutes 13403 Bacillus amyloliquefaciens FZB42 CP000560 NC_009725 Chromosome 0.5352 3693 3918589 1061.1 0.880118 cir 10 9 10 2.9 1.6 0.3 86 89 0 1862000 3.2238 4.90038 36 19 0 9 28 0 4.4 1.9 3.5 2.8 Bacteria Firmicutes 10784 Bacillus anthracis str. Ames Ancestor AE017334 NC_007530 Chromosome 0.6462 5309 5227419 984.6 0.805967 cir 11 11 11 3.2 2.8 0.4 95 95 4047 31.2 1000 2506000 3.5977 4.46877 46 35 0 4 39 0 7.4 3.6 6 5.7 Bacteria Firmicutes 10784 Bacillus anthracis str. Ames Ancestor AE017335 NC_007323 Plasmid pXO2 0.6696 104 94830 911.8 0.681261 cir 0 0 0 0.8 0.4 0.3 0 0 76 36.8 25000 85000 4.5661 4.34763 0 0 0 0 0 0 8.2 5.3 6.8 7.3 Bacteria Firmicutes 10784 Bacillus anthracis str. Ames Ancestor AE017336 NC_007322 Plasmid pXO1 0.6747 204 181677 890.6 0.710993 cir 0 0 0 1.1 3.7 0.6 0 0 93 119.4 60000 169000 3.6758 4.33509 0 0 0 0 0 0 8.4 5.6 8.7 8 Bacteria Firmicutes 309 Bacillus anthracis str. Ames AE016879 NC_003997 Chromosome 0.6462 5311 5227293 984.2 0.806106 cir 11 11 11 3.3 2.8 0.4 95 95 4048 31.2 1000 2506000 3.5974 4.46876 46 35 0 4 39 0 7.3 3.6 6 5.7 Bacteria Firmicutes 10878 Bacillus anthracis str. Sterne AE017225 NC_005945 Chromosome 0.6462 5287 5228663 989 0.838809 cir 11 11 11 3.3 2.8 0.4 95 95 4305 22.8 1000 2507000 3.5959 4.46882 49 37 0 5 42 0 7.4 3.6 6 5.7 Bacteria Firmicutes 17715 Bacillus cereus AH187 CP001177 NC_011658 Chromosome 0.6441 5435 5269030 969.5 0.840951 cir 14 14 14 4.9 4 0.4 103 104 1000 2564000 3.5629 4.47521 44 33 0 5 38 0 7.5 3.5 6 5.7 Bacteria Firmicutes 17715 Bacillus cereus AH187 CP001178 NC_011654 Plasmid pAH187_12 0.6894 23 12481 542.7 0.708597 cir 0 0 0 1.5 0 0.2 0 0 8000 4000 3.1969 4.29353 0 0 0 0 0 0 14.6 6.3 6.4 9.7 Bacteria Firmicutes 17715 Bacillus cereus AH187 CP001179 NC_011655 Plasmid pAH187_270 0.6584 273 270082 989.3 0.786309 cir 0 0 0 2.2 2.5 0.5 0 0 41000 207000 3.2638 4.39987 1 1 0 0 1 0 8.2 4.1 6.4 5.9 Bacteria Firmicutes 17715 Bacillus cereus AH187 CP001180 NC_011656 Plasmid pAH187_45 0.6454 60 45173 752.9 0.845616 cir 0 0 0 1.6 0.1 0.3 0 0 3000 34000 4.2946 4.46607 0 0 0 0 0 0 8.1 2.7 6 7 Bacteria Firmicutes 17715 Bacillus cereus AH187 CP001181 NC_011657 Plasmid pAH187_3 0.6509 5 3091 618.2 0.688127 cir 0 0 0 0 1.8 0 0 0 2000 1000 6.341 4.38718 0 0 0 0 0 0 14.2 1 13.9 9.1 Bacteria Firmicutes 17711 Bacillus cereus AH820 CP001283 NC_011773 Chromosome 0.646 5474 5302683 968.7 0.841637 lin 12 12 12 3.7 3 0.4 95 96 3.6046 4.46782 49 38 0 5 43 0 7.5 3.6 6 5.7 Bacteria Firmicutes 17711 Bacillus cereus AH820 CP001284 NC_011776 Plasmid pAH820_3 0.6506 5 3091 618.2 0.688127 lin 0 0 0 0 1.8 0 0 0 6.341 4.38961 0 0 0 0 0 0 13.9 1 13.1 8.3 Bacteria Firmicutes 17711 Bacillus cereus AH820 CP001285 NC_011777 Plasmid pAH820_272 0.6636 320 272145 850.5 0.797454 lin 0 0 0 1.9 1.2 0.5 0 0 3.5753 4.36588 1 1 0 0 1 0 8 4.5 7 6.2 Bacteria Firmicutes 17711 Bacillus cereus AH820 CP001286 NC_011771 Plasmid pAH820_10 0.6639 11 10915 992.3 0.524691 lin 0 0 0 14 10.5 0.5 0 0 4.1411 4.32006 0 0 0 0 0 0 13.3 6.6 12.4 8.2 Bacteria Firmicutes 74 Bacillus cereus ATCC 10987 AE017194 NC_003909 Chromosome 0.6442 5603 5224283 932.4 0.848153 cir 12 12 12 4.2 2.7 0.4 97 98 4246 32 2000 2590000 3.6137 4.4748 47 34 0 7 41 0 7.5 3.6 6 5.7 Bacteria Firmicutes 74 Bacillus cereus ATCC 10987 AE017195 NC_005707 Plasmid pBc10987 0.6655 241 208369 864.6 0.811992 cir 0 0 0 2 0.5 0.7 0 0 147 63.9 66000 133000 3.644 4.36044 1 1 0 0 1 0 8.7 4.5 7.2 6.8 Bacteria Firmicutes 384 Bacillus cereus ATCC 14579 AE016877 NC_004722 Chromosome 0.6472 5234 5411809 1034 0.806394 cir 13 13 13 5.1 3.2 0.4 108 108 4209 24.4 1000 2681000 3.5718 4.46038 47 35 0 6 41 0 7.5 3.6 6.1 5.9 Bacteria Firmicutes 384 Bacillus cereus ATCC 14579 AE016878 NC_004721 Plasmid pBClin15 0.6197 21 15274 727.3 0.877897 lin 0 0 0 0 0 0.5 0 0 14 50 3.5092 4.58769 0 0 0 0 0 0 7.3 1.6 3.4 2.7 Bacteria Firmicutes 17731 Bacillus cereus B4264 CP001176 NC_011725 Chromosome 0.647 5408 5419036 1002 0.838392 cir 14 14 14 4.5 3.4 0.4 107 108 1000 2621000 3.58 4.46063 51 41 0 6 47 0 7.6 3.7 6.1 5.9 Bacteria Firmicutes 12468 Bacillus cereus E33L CP000001 NC_006274 Chromosome 0.6465 5134 5300915 1032.5 0.838738 cir 13 13 13 3.7 2.7 0.4 96 96 4245 20.9 0 2572000 3.6237 4.4655 49 37 0 6 43 0 7.5 3.6 6.1 5.8 Bacteria Firmicutes 12468 Bacillus cereus E33L CP000040 NC_007103 Plasmid pE33L466 0.6688 430 466370 1084.6 0.660291 cir 0 0 0 12.1 12.2 0.3 0 0 271 58.7 231000 18000 3.6192 4.35166 1 0 0 0 0 0 8.5 4.5 7.8 6.9 Bacteria Firmicutes 12468 Bacillus cereus E33L CP000041 NC_007104 Plasmid pE33L5 0.6911 5 5108 1021.6 0.576547 cir 0 0 0 0 0 0.5 0 0 2 150 2000 4000 6.2451 4.27159 0 0 0 0 0 0 16.5 12.2 17.2 15.7 Bacteria Firmicutes 12468 Bacillus cereus E33L CP000042 NC_007105 Plasmid pE33L54 0.6805 54 53501 990.8 0.667034 cir 0 0 0 0.3 0.3 0.4 0 0 45 20 18000 43000 3.3083 4.31927 0 0 0 0 0 0 8.2 4.7 8.1 6.5 Bacteria Firmicutes 12468 Bacillus cereus E33L CP000043 NC_007106 Plasmid pE33L8 0.681 8 8191 1023.9 0.37761 cir 0 0 0 0 0 1.6 0 0 4 100 5000 2000 4.0776 4.29832 0 0 0 0 0 0 12.7 4.1 16.6 10.4 Bacteria Firmicutes 12468 Bacillus cereus E33L CP000044 NC_007107 Plasmid pE33L9 0.6899 10 9150 915 0.57377 cir 0 0 0 0 0 0.5 0 0 4 150 1000 4000 5.5847 4.26229 0 0 0 0 0 0 14.7 6.7 16.9 10.3 Bacteria Firmicutes 17733 Bacillus cereus G9842 CP001186 NC_011772 Chromosome 0.6474 5488 5387334 981.7 0.835965 lin 13 13 13 4.4 3.7 0.4 96 97 3.5352 4.4595 49 40 0 6 46 0 7.6 3.7 6.2 5.9 Bacteria Firmicutes 17733 Bacillus cereus G9842 CP001187 NC_011775 Plasmid pG9842_209 0.6997 251 209488 834.6 0.796031 lin 0 0 0 1.2 0.5 0.9 0 0 3.595 4.23122 1 0 0 0 0 0 10.6 6.5 9.7 9.5 Bacteria Firmicutes 17733 Bacillus cereus G9842 CP001188 NC_011774 Plasmid pG9842_140 0.671 118 140001 1186.4 0.834223 lin 0 0 0 6.6 0 0.3 2 1 2.9678 4.35183 0 0 0 0 0 0 7.9 3.8 5.8 6.2 Bacteria Firmicutes 16220 Bacillus cereus Q1 CP000227 NC_011969 Chromosome 0.6444 5205 5214195 1001.8 0.837147 cir 13 13 13 4.5 3.1 0.4 94 94 0 2511000 3.6039 4.47449 48 32 0 5 37 0 7.6 3.6 6 5.8 Bacteria Firmicutes 16220 Bacillus cereus Q1 CP000228 NC_011973 Plasmid pBc239 0.6651 228 239246 1049.3 0.765639 cir 0 0 0 6.9 5.2 0.5 0 0 219000 100000 3.3597 4.37235 0 0 0 0 0 0 8.6 4.5 7.6 6.6 Bacteria Firmicutes 16220 Bacillus cereus Q1 CP000229 NC_011971 Plasmid pBc53 0.6492 69 52766 764.7 0.881458 cir 0 0 0 0 0.1 0.3 0 0 48000 13000 2.7328 4.46091 0 0 0 0 0 0 7.4 3.5 6.5 5 Bacteria Firmicutes 13624 Bacillus cereus subsp. cytotoxis NVH 391-98 CP000765 NC_009673 Plasmid pBC9801 0.6974 11 7135 648.6 0.740434 cir 0 0 0 0 0 0.7 0 0 3 266.7 1000 4000 4.2467 4.23049 0 0 0 0 0 0 7.8 5.6 7.6 9 Bacteria Firmicutes 13624 Bacillus cereus subsp. cytotoxis NVH 391-98 CP000764 NC_009674 Chromosome 0.6412 3833 4087024 1066.3 0.793328 cir 13 13 13 4.4 4 0.4 106 106 3162 21.2 2000 1991000 3.9258 4.48932 27 21 0 3 24 0 7.1 3.5 6 5.4 Bacteria Firmicutes 13291 Bacillus clausii KSM-K16 AP006627 NC_006582 Chromosome 0.5525 4108 4303871 1047.7 0.861537 cir 8 7 7 2.3 1 0.3 73 75 3562 15.3 0 2097000 2.8417 4.82918 41 21 0 9 30 0 4 1.9 3.3 2.7 Bacteria Firmicutes 235 Bacillus halodurans C-125 BA000004 NC_002570 Chromosome 0.5631 4066 4202352 1033.5 0.850013 cir 9 8 8 5.1 3.5 0.2 78 78 3409 19.3 2000 2243000 3.5932 4.75848 49 19 0 7 26 0 3.8 1.9 3.3 2.7 Bacteria Firmicutes 13082 Bacillus licheniformis ATCC 14580 AE017333 NC_006322 Chromosome 0.5381 4196 4222645 1006.4 0.86998 cir 7 7 7 1.9 1.6 0.3 72 72 3715 12.9 0 2013000 3.3888 4.87528 38 17 0 9 26 0 4.5 2 3.8 2.8 Bacteria Firmicutes 12388 Bacillus licheniformis ATCC 14580 CP000002 NC_006270 Chromosome 0.5381 4179 4222597 1010.4 0.85707 cir 7 7 7 1.9 1.6 0.3 72 72 0 2013000 3.3886 4.87526 36 16 0 7 23 0 4.5 2 3.8 2.8 Bacteria Firmicutes 20391 Bacillus pumilus SAFR-032 CP000813 NC_009848 Chromosome 0.5871 3681 3704465 1006.4 0.86823 cir 7 7 7 2.6 2.1 0.3 69 70 3704000 1763000 3.612 4.67458 29 16 0 5 21 0 4.7 2.1 3.8 3 Bacteria Firmicutes 76 Bacillus subtilis subsp. subtilis str. 168 AL009126 NC_000964 Chromosome 0.5648 4106 4214630 1026.5 0.870842 cir 10 10 10 2.3 1.8 0.3 86 86 3865 6.2 0 1947000 3.2371 4.76386 35 14 0 9 23 0 4.2 2 3.7 2.9 Bacteria Firmicutes 10877 Bacillus thuringiensis serovar konkukian str. 97-27 AE017355 NC_005957 Chromosome 0.6459 5117 5237682 1023.6 0.837728 cir 14 14 14 4.7 3.6 0.4 105 105 4234 20.9 0 2561000 3.5942 4.46905 49 38 0 5 43 0 7.6 3.7 6.1 5.8 Bacteria Firmicutes 10877 Bacillus thuringiensis serovar konkukian str. 97-27 CP000047 NC_006578 Plasmid pBT9727 0.6736 80 77112 963.9 0.805128 cir 0 0 0 1.8 0 0.4 0 0 67 19.4 37000 64000 4.1096 4.32183 0 0 0 0 0 0 9.9 4.7 7.1 7.9 Bacteria Firmicutes 18255 Bacillus thuringiensis str. Al Hakam CP000486 NC_008598 Plasmid pALH1 0.6385 62 55939 902.2 0.73085 cir 0 0 0 2 0 0.4 0 0 40 55 20000 38000 3.6683 4.44851 0 0 0 0 0 0 8.4 3.6 5.7 5.9 Bacteria Firmicutes 18255 Bacillus thuringiensis str. Al Hakam CP000485 NC_008600 Chromosome 0.6457 4736 5257091 1110 0.82574 cir 14 14 14 4 3.2 0.4 104 104 4121 14.9 1000 2593000 3.5898 4.46902 52 39 0 8 47 0 7.5 3.7 6 5.7 Bacteria Firmicutes 13623 Bacillus weihenstephanensis KBAB4 CP000903 NC_010184 Chromosome 0.6444 5155 5262775 1020.9 0.825377 cir 14 14 14 4.4 3.1 0.4 108 108 0 2534000 3.5903 4.47009 0 0 7.4 3.6 6.2 5.7 Bacteria Firmicutes 13623 Bacillus weihenstephanensis KBAB4 CP000904 NC_010180 Plasmid pBWB401 0.6633 289 417054 1443.1 0.711795 cir 0 0 0 6.8 2 0.3 0 0 281000 130000 3.2837 4.36749 0 0 7.7 4.5 7.5 6 Bacteria Firmicutes 13623 Bacillus weihenstephanensis KBAB4 CP000905 NC_010181 Plasmid pBWB402 0.6665 63 75107 1192.2 0.532201 cir 0 0 0 7.6 5.8 0 0 0 3000 53000 3.768 4.35728 0 0 11.6 5 8.5 7.3 Bacteria Firmicutes 13623 Bacillus weihenstephanensis KBAB4 CP000906 NC_010182 Plasmid pBWB403 0.5664 75 64977 866.4 0.850424 cir 0 0 0 0.2 0 0 0 0 56000 23000 2.0161 4.80024 0 0 7.2 1.5 2.2 3.6 Bacteria Firmicutes 13623 Bacillus weihenstephanensis KBAB4 CP000907 NC_010183 Plasmid pBWB404 0.6463 71 52830 744.1 0.779917 cir 0 0 0 2 0.1 0 0 0 8000 40000 3.0229 4.42413 0 0 7.6 3.5 6.4 5.9 Bacteria Bacteroidetes/Chlorobi 46 Bacteroides fragilis NCTC 9343 CR626928 NC_006873 Plasmid pBF9343 0.6776 48 36560 761.7 0.853118 cir 0 0 0 5.8 6.2 0.3 0 0 25 92 0 12000 5.4294 4.28716 0 0 0 0 0 0 9.1 5.6 8.7 8.1 Bacteria Bacteroidetes/Chlorobi 46 Bacteroides fragilis NCTC 9343 CR626927 NC_003228 Chromosome 0.5681 4260 5205140 1221.9 0.89138 cir 7 6 6 2.7 1.5 0.3 73 73 3551 20 5205000 2716000 2.766 4.75126 41 42 0 1 43 0 4.5 2.2 3.5 3 Bacteria Bacteroidetes/Chlorobi 13067 Bacteroides fragilis YCH46 AP006841 NC_006347 Chromosome 0.5673 4578 5277274 1152.7 0.89896 cir 6 6 6 3.1 1.8 0.3 74 74 3620 26.5 5277000 2617000 2.7538 4.75565 42 42 0 1 43 0 4.5 2.2 3.5 3 Bacteria Bacteroidetes/Chlorobi 13067 Bacteroides fragilis YCH46 AP006842 NC_006297 Plasmid pBFY46 0.6646 47 33716 717.4 0.90856 cir 0 0 0 6.4 0 0.5 0 0 25 88 3000 16000 4.2858 4.3723 0 0 0 0 0 0 9.9 4.7 8.2 6.7 Bacteria Bacteroidetes/Chlorobi 399 Bacteroides thetaiotaomicron VPI-5482 AE015928 NC_004663 Chromosome 0.5716 4778 6260361 1310.2 0.894735 cir 5 5 5 4.1 3.3 0.3 71 71 4198 13.8 4038000 1185000 2.8121 4.7353 67 65 0 0 65 0 4.8 2.3 3.7 3 Bacteria Bacteroidetes/Chlorobi 399 Bacteroides thetaiotaomicron VPI-5482 AY171301 NC_004703 Plasmid p5482 0.5276 38 33038 869.4 0.82959 cir 0 0 0 1.2 0 0.6 0 0 19 100 5000 18000 3.5807 4.9006 0 0 0 0 0 0 6.1 3.3 5.6 2.8 Bacteria Bacteroidetes/Chlorobi 13378 Bacteroides vulgatus ATCC 8482 CP000139 NC_009614 Chromosome 0.578 4065 5163189 1270.2 0.883456 cir 8 7 7 5.1 6 0.3 85 85 3478 16.9 1540000 4082000 2.8189 4.72253 48 35 0 0 35 0 4.7 2.3 3.7 3.2 Bacteria Alphaproteobacteria 16249 Bartonella bacilliformis KC583 CP000524 NC_008783 Chromosome 0.6176 1283 1445021 1126.3 0.806068 cir 2 2 2 7.3 3.2 0.4 44 44 1057 21.4 8000 835000 2.7389 4.57797 11 7 1 0 9 1 6.4 3.2 4.4 4.3 Bacteria Alphaproteobacteria 196 Bartonella henselae str. Houston-1 BX897699 NC_005956 Chromosome 0.6177 1612 1931047 1197.9 0.760147 cir 3 2 2 10.6 3.4 0.5 44 43 1212 33 1931000 974000 3.0599 4.56804 10 8 1 0 10 1 6.7 3.4 4.5 4.6 Bacteria Alphaproteobacteria 44 Bartonella quintana str. Toulouse BX897700 NC_005955 Chromosome 0.612 1308 1581384 1209 0.778175 cir 2 2 2 4.3 0.7 0.4 42 42 1026 27.5 0 723000 2.9551 4.59702 10 8 1 0 10 1 5.7 3 4 4.1 Bacteria Alphaproteobacteria 28109 Bartonella tribocorum CIP 105476 AM260525 NC_010161 Chromosome 0.6114 2136 2619061 1226.2 0.740444 cir 2 2 2 24.6 12.4 0.5 42 42 2619000 1282000 3.1403 4.59551 0 0 7.5 3.2 4.7 4.8 Bacteria Alphaproteobacteria 28109 Bartonella tribocorum CIP 105476 AM260524 NC_010160 PlasmidBtr 0.6497 18 23343 1296.8 0.698282 cir 0 0 0 3.5 2.3 1.2 0 0 14000 7000 1.8892 4.47201 0 0 0 0 0 0 13.4 3.3 8.3 5.1 Bacteria Gammaproteobacteria 12513 Baumannia cicadellinicola str. Hc (Homalodisca coagulata) CP000238 NC_007984 Chromosome 0.6676 595 686194 1153.3 0.854515 lin 2 2 2 0.1 1.6 0.4 39 39 587 1.4 1.1326 4.3754 0 0 0 0 0 0 8.1 5.7 7.3 6.6 Bacteria Deltaproteobacteria 9637 Bdellovibrio bacteriovorus HD100 BX842601 NC_005363 Chromosome 0.4935 3583 3782950 1055.8 0.928193 cir 2 2 2 0.9 0.4 0.3 36 36 3036 18 3781000 1941000 1.5187 5.02226 52 38 0 0 38 0 4 1.6 2.5 2.2 Bacteria Alphaproteobacteria 20841 Beijerinckia indica subsp. indica ATCC 9039 CP001016 NC_010581 Chromosome 0.4294 3569 4170153 1168.4 0.824899 cir 3 3 3 2.1 1.8 0.4 52 52 4049000 1842000 1.4585 5.33337 38 27 0 1 31 3 4.5 1.9 4.2 2.4 Bacteria Alphaproteobacteria 20841 Beijerinckia indica subsp. indica ATCC 9039 CP001017 NC_010580 Plasmid pBIND01 0.438 176 181736 1032.6 0.784258 cir 0 0 0 3.7 1.6 0.2 0 0 168000 66000 1.5352 5.26781 1 0 0 0 1 1 4.5 2.1 3.4 2.7 Bacteria Alphaproteobacteria 20841 Beijerinckia indica subsp. indica ATCC 9039 CP001018 NC_010578 Plasmid pBIND02 0.4568 39 66727 1710.9 0.760022 cir 0 0 0 4.2 0 0.3 0 0 25000 5000 1.4102 5.21202 0 0 0 0 0 0 3.9 1.7 4.7 1.8 Bacteria Actinobacteria 16321 Bifidobacterium adolescentis ATCC 15703 AP009256 NC_008618 Chromosome 0.4082 1631 2089645 1281.2 0.8649 cir 6 5 5 2.7 0.9 0.7 54 54 1462 11.6 1032000 2068000 0.7959 5.49425 11 3 1 2 6 0 8.1 2.5 4.5 3.4 Bacteria Actinobacteria 19423 Bifidobacterium animalis subsp. lactis AD011 CP001213 NC_011835 Chromosome 0.3951 1528 1933695 1265.5 0.844309 cir 3 2 2 1 2.4 0.6 52 52 1189000 609000 0.7114 5.54498 8 3 1 2 6 0 7.6 2.5 5.1 3.3 Bacteria Actinobacteria 18773 Bifidobacterium longum DJO10A CP000605 NC_010816 Chromosome 0.3985 1990 2375792 1193.9 0.863672 cir 4 4 4 4 2.7 0.7 58 58 1692000 564000 0.7066 5.49876 10 4 1 2 7 0 8 2.6 4.5 3.4 Bacteria Actinobacteria 18773 Bifidobacterium longum DJO10A AF538868 NC_004252 Plasmid pDOJH10L 0.3782 10 10073 1007.3 0.584037 cir 0 0 0 17 0 0.8 0 0 7000 1000 1.3601 5.45253 0 0 0 0 0 0 13.5 2.1 6.5 4.4 Bacteria Actinobacteria 18773 Bifidobacterium longum DJO10A AF538869 NC_004253 Plasmid pDOJH10S 0.3382 3 3661 1220.3 0.528544 cir 0 0 0 0 0 0.8 0 0 3000 1000 0.8741 5.69727 0 0 0 0 0 0 14.4 4.9 8.2 4.8 Bacteria Actinobacteria 328 Bifidobacterium longum NCC2705 AF540971 NC_004943 Plasmid pBLO1 0.3519 2 3626 1813 0.713734 cir 0 0 0 2.6 0 1.4 0 0 2 0 0 2000 0.3309 5.53942 0 0 0 0 0 0 15.6 2.5 7.9 7.1 Bacteria Actinobacteria 328 Bifidobacterium longum NCC2705 AE014295 NC_004307 Chromosome 0.3988 1727 2256640 1306.7 0.8527 cir 4 4 4 3.4 1.9 0.7 57 57 1574 9.7 1653000 530000 0.7071 5.49695 9 4 1 2 7 0 7.9 2.6 4.4 3.4 Bacteria Actinobacteria 17189 Bifidobacterium longum subsp. infantis ATCC 15697 CP001095 NC_011593 Chromosome 0.4014 2416 2832748 1172.5 0.850316 cir 4 4 4 4.6 3.7 0.6 79 79 2000 1524000 0.8003 5.4929 21 6 1 7 14 0 7.8 2.7 4.8 3.6 Bacteria Betaproteobacteria 27 Bordetella avium 197N AM167904 NC_010645 Chromosome 0.3842 3423 3732255 1090.3 0.900694 cir 3 3 3 2.7 0.6 0.5 61 61 3726000 1856000 0.6681 5.52489 31 17 0 0 17 0 6.1 2.6 4.4 3.4 Bacteria Betaproteobacteria 24 Bordetella bronchiseptica RB50 BX470250 NC_002927 Chromosome 0.3192 5006 5339179 1066.6 0.920899 cir 3 3 3 2.9 4 1.1 55 55 4398 13.8 5332000 2977000 0.3781 5.82633 31 17 0 1 18 0 15 7.9 10.5 8.7 Bacteria Betaproteobacteria 25 Bordetella parapertussis 12822 BX470249 NC_002928 Chromosome 0.319 4402 4773551 1084.4 0.921117 cir 3 3 3 3.6 3 1.1 54 53 3782 16.4 4764000 2868000 0.3566 5.82899 28 15 0 1 16 0 15 7.9 10.4 8.6 Bacteria Betaproteobacteria 26 Bordetella pertussis Tohama I BX470248 NC_002929 Chromosome 0.3228 3806 4086189 1073.6 0.91478 cir 3 3 3 8.5 8.2 1 51 51 3143 21.1 3464000 2230000 0.353 5.80754 21 13 0 0 13 0 14.5 7.3 9.9 8.1 Bacteria Betaproteobacteria 28135 Bordetella petrii DSM 12804 AM902716 NC_010170 Chromosome 0.3452 5035 5287950 1050.2 0.903667 cir 3 3 3 6.8 6 0.8 51 51 5251000 2612000 0.4131 5.71597 37 19 0 1 20 0 11.3 5.6 7.9 6.2 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000395 NC_008277 Chromosome 0.7169 856 905394 1057.7 0.93339 lin 2 2 2 1.8 0 0.9 33 33 784 9.2 3.4923 4.12559 6 2 0 0 2 0 17 9 10.7 15.1 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000396 NC_008564 Plasmid lp60 0.731 75 59958 799.4 0.812602 lin 0 0 0 6.9 0.1 0.9 0 0 54 38.9 3.2556 4.0691 0 0 0 0 0 0 23.4 12.3 16.2 19.3 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000397 NC_008565 Plasmid lp60-2 0.7562 59 59804 1013.6 0.569143 lin 0 0 0 28 18.4 1.1 0 0 24 145.8 3.5633 3.9926 0 0 0 0 0 0 29.5 14.9 19.2 24.2 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000398 NC_008566 Plasmid lp34 0.7645 36 34273 952 0.46611 lin 0 0 0 2 6.9 1 0 0 21 71.4 2.9965 4.00074 0 0 0 0 0 0 24.6 16.6 21.7 22.1 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000399 NC_008567 Plasmid lp32 0.7533 55 32368 588.5 0.643969 lin 0 0 0 9.8 0 1.9 0 0 11 400 3.6147 4.00966 0 0 0 0 0 0 25.6 14.5 16.7 22.7 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000400 NC_008273 Plasmid cp30 0.7078 43 30017 698.1 0.864377 cir 0 0 0 5.6 0.4 1.4 0 0 17 152.9 26000 7000 3.1682 4.16568 0 0 0 0 0 0 17.5 7.1 11.5 13.8 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000401 NC_008568 Plasmid lp28 0.749 34 28533 839.2 0.611958 lin 0 0 0 6.3 7.1 1.2 0 0 21 61.9 3.0596 4.05036 0 0 0 0 0 0 24.6 13.7 16.6 20.8 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000402 NC_008274 Plasmid cp27 0.7411 28 26533 947.6 0.86839 cir 0 0 0 6.8 0.2 0.7 0 0 20 40 11000 19000 2.3669 4.07453 0 0 0 0 0 0 23.9 14.4 17.9 18.9 Bacteria Spirochaetes 17057 Borrelia afzelii PKo CP000403 NC_008569 Plasmid lp25 0.6863 29 24794 855 0.881826 lin 0 0 0 4 0 1 0 0 10 190 3.1096 4.24445 0 0 0 0 0 0 14 6 8.9 10.1 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000783 NC_001318 Chromosome 0.714 850 910724 1071.4 0.932594 lin 2 1 2 1.1 0 0.9 18 33 801 6.1 3.4952 4.1364 6 2 0 0 2 0 16.8 8.8 10.6 14.5 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000791 NC_001904 Plasmid cp9 0.7631 11 9386 853.3 0.759109 cir 0 0 0 0 3.2 1.8 0 0 0 3000 3.7396 3.98744 0 0 0 0 0 0 28.5 14.8 18.4 26.6 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000792 NC_001903 Plasmid cp26 0.737 29 26498 913.7 0.878821 cir 0 0 0 5.4 0.2 0.5 0 0 20 45 11000 3000 2.7096 4.0883 0 0 0 0 0 0 23.4 14 17.9 18 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001575 NC_000948 Plasmid cp32-1 0.7064 42 30750 732.1 0.921821 cir 0 0 0 1.5 0.9 1.1 0 0 20 110 20000 10000 3.3268 4.16362 0 0 0 0 0 0 16.6 7.2 8.3 12.7 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001576 NC_000949 Plasmid cp32-3 0.7115 45 30223 671.6 0.924627 cir 0 0 0 2.3 0.7 1.5 0 0 27 66.7 20000 10000 3.1532 4.15653 0 0 0 0 0 0 18 6.9 8.9 14.5 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001577 NC_000950 Plasmid cp32-4 0.7071 44 30299 688.6 0.904188 cir 0 0 0 1.8 2.5 1.1 0 0 18 144.4 20000 10000 3.043 4.16671 0 0 0 0 0 0 15.5 6.1 8.8 12.5 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001578 NC_000951 Plasmid cp32-6 0.7066 42 29838 710.4 0.926403 cir 0 0 0 1.6 0.7 1.1 0 0 21 100 20000 10000 3.271 4.17005 0 0 0 0 0 0 16.1 8.4 9 13.2 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001579 NC_000952 Plasmid cp32-7 0.7093 44 30800 700 0.934416 cir 0 0 0 2 0.7 0.9 0 0 20 120 20000 5000 3.4221 4.15678 0 0 0 0 0 0 17.1 7.6 8.6 15.8 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001580 NC_000953 Plasmid cp32-8 0.7087 43 30885 718.3 0.923879 cir 0 0 0 2.6 0.8 1.3 0 0 54 -20.4 20000 5000 3.4839 4.1572 0 0 0 0 0 0 18.5 7.4 9.1 13.4 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001581 NC_000954 Plasmid cp32-9 0.7068 35 30651 875.7 0.720499 cir 0 0 0 2.8 0.4 1.1 0 0 24 45.8 20000 10000 3.1581 4.17165 0 0 0 0 0 0 19 6.7 8.2 14.7 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001583 NC_000957 Plasmid lp5 0.7617 6 5228 871.3 0.707536 lin 0 0 0 0 1.3 2 0 0 2 200 2.1997 4.01491 0 0 0 0 0 0 31.8 13.3 16 28.5 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001582 NC_000955 Plasmid lp21 0.7935 11 18753 1704.8 0.304325 lin 0 0 0 66.5 0 0.4 0 0 4 175 0.9972 3.8908 0 0 0 0 0 0 70.7 10.4 14.2 47.5 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE001584 NC_000956 Plasmid lp56 0.7271 72 52971 735.7 0.732608 lin 0 0 0 2.3 0.7 0.9 0 0 30 140 3.2187 4.10796 0 0 0 0 0 0 20.4 10.1 11.9 17.8 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000793 NC_001849 Plasmid lp17 0.7687 23 16823 731.4 0.504131 lin 0 0 0 1.7 1.5 1.1 0 0 13 76.9 2.6927 3.98372 0 0 0 0 0 0 25.6 16.9 19.6 23 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000785 NC_001850 Plasmid lp25 0.7663 29 24177 833.7 0.529222 lin 0 0 0 0 7.6 1.4 0 0 8 262.5 4.3182 3.96982 0 0 0 0 0 0 22.7 17.9 19.7 25.8 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000794 NC_001851 Plasmid lp28-1 0.6771 26 26921 1035.4 0.353479 lin 0 0 0 35.4 0.5 2.8 0 0 12 116.7 4.4575 4.21113 0 0 0 0 0 0 27.8 10.1 12 15.8 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000786 NC_001852 Plasmid lp28-2 0.6836 32 29766 930.2 0.868138 lin 0 0 0 2.5 0 0.9 0 0 17 88.2 2.9396 4.25247 0 0 0 0 0 0 12.6 6.4 9.6 9.4 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000784 NC_001853 Plasmid lp28-3 0.7495 37 28601 773 0.56012 lin 0 0 0 5.2 0 0.7 0 0 23 60.9 3.7132 4.00604 0 0 0 0 0 0 25.8 15.4 15 20.4 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000789 NC_001854 Plasmid lp28-4 0.7547 43 27323 635.4 0.616148 lin 0 0 0 13.8 9.6 1.2 0 0 10 330 3.7917 4.02242 0 0 0 0 0 0 27.4 15.8 18.6 26 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000788 NC_001855 Plasmid lp36 0.7307 51 36849 722.5 0.628918 lin 0 0 0 9.8 4 1 0 0 36 41.7 3.3651 4.05079 0 0 0 0 0 0 19.8 10.3 14.1 17.6 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000787 NC_001856 Plasmid lp38 0.7393 48 38829 808.9 0.559865 lin 0 0 0 14.2 0.3 1.7 0 0 19 152.6 3.3197 4.06024 0 0 0 0 0 0 21.5 13.5 15.5 18.6 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 AE000790 NC_001857 Plasmid lp54 0.7184 76 53561 704.8 0.831501 lin 0 0 0 3.1 0.1 1.2 0 0 48 58.3 3.7322 4.10332 0 0 0 0 0 0 23.2 10.9 14.8 18.8 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001198 NC_011783 Plasmid ZS7_lp25 0.7666 17 24326 1430.9 0.451574 lin 0 0 0 0 7.5 1.4 0 0 4.3821 3.96712 0 0 0 0 0 0 23.2 17.2 19.8 25.3 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001205 NC_011728 Chromosome 0.7146 808 906707 1122.2 0.908553 cir 1 1 1 0.3 0 0.9 33 33 455000 0 3.5 4.13481 6 1 0 0 1 0 16.9 8.9 10.7 14.6 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001199 NC_011784 Plasmid ZS7_lp54 0.7185 55 53615 974.8 0.690963 lin 0 0 0 2.7 0.1 1.2 0 0 3.7378 4.10158 0 0 0 0 0 0 23.3 11 15.4 17.8 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001200 NC_011735 Plasmid ZS7_cp32-12 0.7067 39 29806 764.3 0.830974 cir 0 0 0 0.4 0.9 1 0 0 20000 10000 3.0229 4.17017 0 0 0 0 0 0 15.2 6.5 7.8 12 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001201 NC_011778 Plasmid ZS7_lp36 0.7311 23 36852 1602.3 0.379925 lin 0 0 0 10.1 4.2 1 0 0 3.3567 4.04874 0 0 0 0 0 0 20 10.1 13.9 17.6 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001202 NC_011720 Plasmid ZS7_cp32-3+10 0.7203 60 48168 802.8 0.818303 cir 0 0 0 47.7 0.9 1.5 0 0 38000 23000 3.1183 4.12927 0 0 0 0 0 0 20.2 7.4 9.3 15 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001203 NC_011781 Plasmid ZS7_lp28-3 0.7492 22 28414 1291.5 0.486486 lin 0 0 0 5.1 0.2 0.7 0 0 3.7411 4.0076 0 0 0 0 0 0 25.2 15.2 15.2 19.9 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001204 NC_011782 Plasmid ZS7_lp17 0.7708 14 17266 1233.3 0.405305 lin 0 0 0 8.1 1.4 1.1 0 0 2.7105 3.97144 0 0 0 0 0 0 26.5 17.8 18.8 25.1 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001206 NC_011731 Plasmid ZS7_cp32-1 0.7086 36 30330 842.5 0.77669 cir 0 0 0 2.4 0.7 0.5 0 0 20000 10000 3.307 4.15904 0 0 0 0 0 0 16.1 7.9 6.8 13.3 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001207 NC_011785 Plasmid ZS7_lp28-4 0.756 21 28885 1375.5 0.443725 lin 0 0 0 7.3 8.7 1.4 0 0 3.1712 4.02554 0 0 0 0 0 0 25.4 15.1 18.4 23.6 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001208 NC_011736 Plasmid ZS7_cp32-4 0.7102 40 30964 774.1 0.821309 cir 0 0 0 1.6 0.5 1.2 0 0 20000 4000 3.5331 4.15694 0 0 0 0 0 0 16.8 7.1 9.1 14.9 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001209 NC_011779 Plasmid ZS7_lp28-2 0.6838 31 29758 959.9 0.83144 lin 0 0 0 2.4 0 0.9 0 0 2.9505 4.25182 0 0 0 0 0 0 12.6 6.3 9.7 9.7 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001210 NC_011780 Plasmid ZS7_lp28-1 0.6845 13 23422 1801.7 0.247972 lin 0 0 0 29.1 1 1.1 0 0 4.3634 4.19869 0 0 0 0 0 0 26.5 9.4 11 14.6 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001211 NC_011722 Plasmid ZS7_cp32-9 0.7067 35 30467 870.5 0.690846 cir 0 0 0 2 0.4 1 0 0 20000 10000 3.0197 4.17216 0 0 0 0 0 0 18.4 6.6 8.3 14.8 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 CP001212 NC_011724 Plasmid ZS7_cp26 0.7367 25 26514 1060.6 0.774459 cir 0 0 0 5 0.2 0.5 0 0 11000 3000 2.6703 4.08914 0 0 0 0 0 0 23.1 14.2 17.9 17.2 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000976 NC_011229 Chromosome 0.7241 820 931674 1136.2 0.92993 lin 1 1 1 2 0 1 32 32 2.787 4.13699 6 2 0 0 2 0 17.9 8.4 9.7 15.3 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000977 NC_011224 Plasmid pl11 0.7471 8 11226 1403.2 0.592464 lin 0 0 0 0 0 0.7 0 0 3.8393 4.09081 0 0 0 0 0 0 22.1 13.9 19 20 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000978 NC_011226 Plasmid pl15 0.7191 13 15049 1157.6 0.671872 lin 0 0 0 5.6 1 2.6 0 0 4.4189 4.11928 0 0 0 0 0 0 23.9 8.1 13.1 15.2 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000979 NC_011247 Plasmid pl165 0.7343 134 163884 1223 0.732866 lin 0 0 0 19.9 3.9 1.5 0 0 2.456 4.13343 0 0 0 0 0 0 21.7 11 13.9 17 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000980 NC_011257 Plasmid pl23 0.7365 21 23303 1109.7 0.739433 lin 0 0 0 1.9 0.3 2.5 0 0 3.6176 4.10053 0 0 0 0 0 0 24.1 10.3 14.2 19.2 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000981 NC_011259 Plasmid pl23b 0.7105 12 23036 1919.7 0.529259 lin 0 0 0 16.1 0.5 1.6 0 0 4.5798 4.15077 0 0 0 0 0 0 24.1 9.9 12.6 19.8 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000982 NC_011261 Plasmid pl26 0.7108 34 26917 791.7 0.885203 lin 0 0 0 0.9 1 1.3 0 0 2.3034 4.19374 0 0 0 0 0 0 16.2 5.8 9.6 11.6 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000983 NC_011265 Plasmid pl27 0.7147 35 27476 785 0.850633 cir 0 0 0 0.4 0.4 1.1 0 0 5000 23000 2.6205 4.16943 0 0 0 0 0 0 16.6 6.6 9.8 12.3 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000984 NC_011245 Plasmid pl28 0.7113 36 28343 787.3 0.906009 lin 0 0 0 0.8 0.4 1.6 0 0 2.7696 4.17919 0 0 0 0 0 0 16.6 6.7 9.1 11.9 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000985 NC_011248 Plasmid pl35 0.6843 19 35286 1857.2 0.482854 lin 0 0 0 31.2 0 3.4 0 0 5.685 4.18693 0 0 0 0 0 0 22.3 7.6 9.9 15.2 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000986 NC_011249 Plasmid pl36 0.7052 20 35831 1791.5 0.464626 lin 0 0 0 17.4 12.8 1.7 0 0 4.9482 4.15716 0 0 0 0 0 0 22.7 10.4 10.8 18.4 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000987 NC_011250 Plasmid pl40 0.7011 18 40353 2241.8 0.394147 lin 0 0 0 13.4 27.1 1.9 0 0 5.209 4.15011 0 0 0 0 0 0 24.4 8 9 17.2 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000988 NC_011251 Plasmid pl41 0.706 28 41259 1473.5 0.525922 lin 0 0 0 27 28.6 2.4 0 0 4.8595 4.14873 0 0 0 0 0 0 22.8 9.1 11.2 17.2 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000989 NC_011254 Plasmid pl42 0.6975 20 42153 2107.7 0.392048 lin 0 0 0 15.6 47 2 0 0 4.8134 4.17808 0 0 0 0 0 0 21.2 7.9 10.4 15.8 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000990 NC_011256 Plasmid pl70 0.6977 45 66407 1475.7 0.59941 lin 0 0 0 14 7.1 1.9 0 0 3.8761 4.19795 0 0 0 0 0 0 20.1 8.2 9.4 13.4 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000991 NC_011262 Plasmid pl31 0.7218 20 31021 1551 0.448019 lin 0 0 0 25.4 30.1 1.8 0 0 4.2004 4.12726 0 0 0 0 0 0 23.1 9.7 10.6 19.1 Bacteria Spirochaetes 18231 Borrelia duttonii Ly CP000992 NC_011264 Plasmid pl32 0.6979 22 31663 1439.2 0.47914 lin 0 0 0 22.2 6.6 2.7 0 0 4.3237 4.16991 0 0 0 0 0 0 23.1 9.8 11.3 16.6 Bacteria Spirochaetes 12554 Borrelia garinii PBi CP000013 NC_006156 Chromosome linear 0.717 832 904246 1086.8 0.926787 lin 2 2 2 1.5 0 0.9 31 33 766 8.6 3.4843 4.12004 6 2 0 0 2 0 17 9.2 10.8 14.9 Bacteria Spirochaetes 12554 Borrelia garinii PBi CP000014 NC_006128 Plasmid cp26 0.744 26 27108 1042.6 0.837945 cir 0 0 0 5.8 0.2 0.7 0 0 20 30 11000 20000 2.7114 4.06212 0 0 0 0 0 0 24.2 13.8 18 18.7 Bacteria Spirochaetes 12554 Borrelia garinii PBi CP000015 NC_006129 Plasmid lp54 0.7353 74 55560 750.8 0.719942 lin 0 0 0 8.4 0 0.9 0 0 48 54.2 3.2937 4.03582 0 0 0 0 0 0 25.3 13.7 17.3 20.3 Bacteria Spirochaetes 29637 Borrelia hermsii DAH CP000048 NC_010673 Chromosome 0.7017 819 922307 1126.1 0.932771 lin 1 1 1 0.8 0.2 0.8 32 32 2.837 4.18215 6 2 0 0 2 0 13.6 6.1 7.2 11.2 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000993 NC_011244 Chromosome 0.7248 800 930981 1163.7 0.904862 lin 1 1 1 2.2 0 1 32 32 2.809 4.13424 6 2 0 0 2 0 18 8.4 9.7 15.5 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000994 NC_011246 Plasmid pl124 0.739 91 123937 1361.9 0.620525 lin 0 0 0 6.1 4 1.7 0 0 2.5005 4.11947 0 0 0 0 0 0 21.8 11.3 13.8 17.4 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000995 NC_011252 Plasmid pl23 0.7426 17 22945 1349.7 0.583657 lin 0 0 0 0.8 0 2.1 0 0 2.8852 4.09394 0 0 0 0 0 0 23.7 11.9 15.2 20.3 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000996 NC_011253 Plasmid pl33 0.7046 17 33213 1953.7 0.331677 lin 0 0 0 17.6 2.9 1.7 0 0 4.0436 4.16205 0 0 0 0 0 0 22.1 8.7 11.3 17.3 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000997 NC_011255 Plasmid pl35 0.7273 15 35315 2354.3 0.301203 lin 0 0 0 2 61.7 1.4 0 0 3.4971 4.11612 0 0 0 0 0 0 20.3 9 10.4 17 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000998 NC_011258 Plasmid pl37 0.706 19 36869 1940.5 0.4283 lin 0 0 0 12.3 8 2.1 0 0 5.4083 4.14985 0 0 0 0 0 0 22.7 8.8 12.9 18.4 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP000999 NC_011260 Plasmid pl53 0.7103 28 52772 1884.7 0.369912 lin 0 0 0 17.6 23.2 1.8 0 0 5.0311 4.12493 0 0 0 0 0 0 23.4 8.5 11.4 16.7 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 CP001000 NC_011263 Plasmid pl6 0.6903 3 6131 2043.7 0.294079 lin 0 0 0 0 0 4.4 0 0 7.3234 4.23191 0 0 0 0 0 0 28.2 18.5 24.5 31.6 Bacteria Spirochaetes 13597 Borrelia turicatae 91E135 CP000049 NC_008710 Chromosome 0.7088 818 917330 1121.4 0.937064 lin 1 1 1 0.6 0.1 0.8 32 32 2.8523 4.16721 6 2 0 0 2 0 14.5 6.6 8 12.4 Bacteria Alphaproteobacteria 17 Bradyrhizobium japonicum USDA 110 BA000040 NC_004463 Chromosome 0.3594 8317 9105828 1094.8 0.866692 cir 1 1 1 5.2 4.6 0.6 50 51 6775 22.8 628000 5002000 0.6304 5.63292 115 64 4 5 80 7 9.1 4.5 6.9 5.1 Bacteria Alphaproteobacteria 16137 Bradyrhizobium sp. BTAi1 CP000495 NC_009475 Plasmid pBBta01 0.3931 228 228826 1003.6 0.794993 cir 0 0 0 4.1 3.1 0.3 0 0 155 47.1 191000 60000 0.8841 5.46797 0 0 0 0 0 0 5.3 2.8 3.8 3.4 Bacteria Alphaproteobacteria 16137 Bradyrhizobium sp. BTAi1 CP000494 NC_009485 Chromosome 0.3508 7394 8264687 1117.8 0.856663 cir 2 2 2 5.4 3.3 0.6 52 52 6064 21.9 168000 4298000 0.4846 5.68357 97 52 4 5 75 14 9.8 4.8 7.3 5.6 Bacteria Alphaproteobacteria 19575 Bradyrhizobium sp. ORS278 CU234118 NC_009445 Chromosome 0.3449 6752 7456587 1104.4 0.857124 cir 2 2 2 4 3.4 0.7 50 50 5435 24.2 241000 3963000 0.4923 5.70612 87 52 2 1 67 12 10.7 5.5 8 6.2 Bacteria Alphaproteobacteria 18999 Brucella abortus S19 CP000887 NC_010742 Chromosome 1 0.4284 1967 2122487 1079 0.826903 cir 2 2 2 2 1.4 0.3 41 41 2009000 1044000 1.0622 5.36969 13 12 1 1 15 1 5 2.1 3.8 2.6 Bacteria Alphaproteobacteria 18999 Brucella abortus S19 CP000888 NC_010740 Chromosome 2 0.4266 1033 1161449 1124.3 0.839408 cir 1 1 1 1.1 0.8 0.3 14 14 1160000 671000 1.0464 5.38314 7 3 0 0 4 1 4.7 2.2 3.8 2.7 Bacteria Alphaproteobacteria 9619 Brucella abortus bv. 1 str. 9-941 AE017223 NC_006932 Chromosome I 0.4284 2030 2124241 1046.4 0.809861 cir 2 2 2 2.1 1.4 0.3 41 41 1566 29.6 2011000 1046000 1.0608 5.36949 13 12 1 1 15 1 5 2.1 3.8 2.6 Bacteria Alphaproteobacteria 9619 Brucella abortus bv. 1 str. 9-941 AE017224 NC_006933 Chromosome II 0.4266 1055 1162204 1101.6 0.818114 cir 1 1 1 1.2 0.8 0.3 14 14 849 24.3 1161000 672000 1.0445 5.38314 7 3 0 0 4 1 4.7 2.2 3.8 2.7 Bacteria Alphaproteobacteria 20243 Brucella canis ATCC 23365 CP000872 NC_010103 Chromosome I 0.4279 2102 2105969 1001.9 0.841834 cir 2 2 2 2 1.6 0.3 41 41 1987000 1008000 1.0556 5.37229 13 12 1 0 14 1 5.1 2.1 3.8 2.6 Bacteria Alphaproteobacteria 20243 Brucella canis ATCC 23365 CP000873 NC_010104 Chromosome II 0.427 1149 1206800 1050.3 0.837438 cir 1 1 1 0.8 0.8 0.3 14 14 11000 543000 1.0575 5.3806 5 3 0 0 4 1 4.7 2.1 3.8 2.7 Bacteria Alphaproteobacteria 180 Brucella melitensis 16M AE008917 NC_003317 Chromosome I 0.4284 2059 2117144 1028.2 0.854043 cir 2 2 2 2.1 1.4 0.3 40 40 1674 23 0 960000 1.0645 5.36961 13 12 1 1 15 1 5 2.1 3.8 2.6 Bacteria Alphaproteobacteria 180 Brucella melitensis 16M AE008918 NC_003318 Chromosome II 0.4266 1139 1177787 1034.1 0.874456 cir 1 1 1 0.7 0.9 0.3 14 14 965 18 94000 748000 1.0615 5.38311 7 3 0 0 4 1 4.8 2.1 3.8 2.7 Bacteria Alphaproteobacteria 16203 Brucella melitensis biovar Abortus 2308 AM040264 NC_007618 Chromosome I 0.4284 2186 2121359 970.4 0.862295 cir 2 2 2 2.2 1.4 0.3 41 41 1566 39.6 2008000 1044000 1.0622 5.36958 12 11 1 1 14 1 5 2.1 3.8 2.6 Bacteria Alphaproteobacteria 16203 Brucella melitensis biovar Abortus 2308 AM040265 NC_007624 Chromosome II 0.4266 1164 1156948 993.9 0.888083 cir 1 1 1 1.2 0.8 0.3 15 14 849 37.1 1156000 675000 1.0409 5.38347 7 3 0 0 4 1 4.7 2.1 3.8 2.7 Bacteria Alphaproteobacteria 12514 Brucella ovis ATCC 25840 CP000709 NC_009504 Chromosome II 0.4277 962 1164220 1210.2 0.763321 cir 1 1 1 1.7 1.8 0.3 14 14 814 18.2 1162000 507000 1.0338 5.37828 6 2 0 0 3 1 4.6 2.1 3.8 2.6 Bacteria Alphaproteobacteria 12514 Brucella ovis ATCC 25840 CP000708 NC_009505 Chromosome I 0.4282 1930 2111370 1094 0.801787 cir 2 2 2 2.8 2 0.3 39 39 1584 21.8 1998000 1035000 1.0581 5.37124 13 11 1 1 14 1 5 2.1 3.9 2.6 Bacteria Alphaproteobacteria 320 Brucella suis 1330 AE014291 NC_004310 Chromosome I 0.4279 2123 2107794 992.8 0.842584 cir 2 2 2 2.1 1.6 0.3 0 41 1608 32 1989000 1010000 1.054 5.37259 13 12 1 0 14 1 5.1 2.1 3.8 2.6 Bacteria Alphaproteobacteria 320 Brucella suis 1330 AE014292 NC_004311 Chromosome II 0.4268 1150 1207381 1049.9 0.847582 cir 1 1 1 0.8 0.9 0.3 0 14 911 26.2 11000 543000 1.0541 5.38126 6 3 0 0 4 1 4.7 2.1 3.8 2.7 Bacteria Alphaproteobacteria 20371 Brucella suis ATCC 23445 CP000911 NC_010169 Chromosome I 0.4288 1921 1923763 1001.4 0.843789 cir 1 1 1 1.7 1.5 0.3 35 35 1810000 1049000 1.0521 5.3682 0 0 5.1 2 3.8 2.6 Bacteria Alphaproteobacteria 20371 Brucella suis ATCC 23445 CP000912 NC_010167 Chromosome II 0.4267 1320 1400844 1061.2 0.812144 cir 2 2 2 2.2 1.2 0.3 19 19 1389000 542000 1.0637 5.37966 0 0 4.8 2.2 3.9 2.7 Bacteria Gammaproteobacteria 31225 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) CP001161 NC_011833 Chromosome 0.7371 555 642122 1157 0.858745 cir 1 1 1 0 0 1.1 32 32 628000 332000 3.3414 4.14241 0 0 0 0 0 0 20.9 15.3 17.4 20 Bacteria Gammaproteobacteria 245 Buchnera aphidicola str. APS (Acyrthosiphon pisum) BA000003 NC_002528 Chromosome 0.7369 564 640681 1136 0.868954 cir 1 1 1 0 0.1 1.2 32 32 564 0 627000 331000 3.3408 4.14359 0 0 0 0 0 0 20.9 15.3 17.3 19.8 Bacteria Gammaproteobacteria 245 Buchnera aphidicola str. APS (Acyrthosiphon pisum) AP001071 NC_002253 Plasmid pLeu 0.7329 7 7786 1112.3 0.845877 cir 0 0 0 0 3 1.3 0 0 7 0 4000 7000 2.71 4.16042 0 0 0 0 0 0 17.5 16 17.4 17.4 Bacteria Gammaproteobacteria 245 Buchnera aphidicola str. APS (Acyrthosiphon pisum) AP001070 NC_002252 Plasmid pTrp 0.6939 3 7258 2419.3 0.381372 cir 0 0 0 99.9 0 0 0 0 3 0 6000 2000 5.8832 4.30481 0 0 0 0 0 0 14.3 11.7 10.9 17.3 Bacteria Gammaproteobacteria 256 Buchnera aphidicola str. Bp (Baizongia pistaciae) AF492591 NC_004555 Plasmid pBBp1 0.7461 3 2399 799.7 0.865361 cir 0 0 0 11.2 0 3.1 0 0 3 0 2000 1000 5.2939 4.03269 0 0 0 0 0 0 19.1 17.5 17.3 23.6 Bacteria Gammaproteobacteria 256 Buchnera aphidicola str. Bp (Baizongia pistaciae) AE016826 NC_004545 Chromosome 0.7466 504 615980 1222.2 0.811216 cir 1 1 1 0 0 1.1 32 32 504 0 3000 320000 1.8483 4.14254 0 0 0 0 0 0 21.8 15.3 16.8 21.3 Bacteria Gammaproteobacteria 16372 Buchnera aphidicola str. Cc (Cinara cedri) AY438025 NC_011878 Plasmid pLeu-BCc 0.7271 5 6054 1210.8 0.90816 cir 0 0 0 0 0 3.1 0 0 1000 5000 5.3023 4.19732 0 0 0 0 0 0 20.6 16.6 20.9 19.5 Bacteria Gammaproteobacteria 16372 Buchnera aphidicola str. Cc (Cinara cedri) CP000263 NC_008513 Chromosome 0.799 360 416380 1156.6 0.858723 cir 1 1 1 0.2 0 3.2 31 31 346 4 414000 212000 5.1018 3.9475 0 0 0 0 0 0 42.3 32.1 34.1 41.1 Bacteria Gammaproteobacteria 312 Buchnera aphidicola str. Sg (Schizaphis graminum) AE013218 NC_004061 Chromosome 0.7467 545 641454 1177 0.833109 cir 1 1 1 0 0 1.3 32 32 544 0.2 628000 331000 3.9502 4.09624 0 0 0 0 0 0 23.4 16.8 19.2 22.2 Bacteria Gammaproteobacteria 31223 Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) CP001158 NC_011834 Chromosome 0.7371 553 641895 1160.8 0.854308 cir 1 1 1 0 0 1.2 32 32 628000 332000 3.34 4.14253 0 0 0 0 0 0 20.9 15.2 17.4 19.9 Bacteria Betaproteobacteria 13490 Burkholderia ambifaria AMMD CP000440 NC_008390 Chromosome 1 0.3313 3213 3556545 1106.9 0.874123 cir 4 4 4 2.6 1.5 1.1 61 61 2821 13.9 62000 1780000 0.4017 5.85547 26 16 0 0 16 0 15.7 9 10.9 10.7 Bacteria Betaproteobacteria 13490 Burkholderia ambifaria AMMD CP000441 NC_008391 Chromosome 2 0.3319 2346 2646969 1128.3 0.868918 cir 1 1 1 2.8 1.4 1 6 6 1923 22 2001000 707000 0.344 5.87397 28 13 0 3 16 0 14.8 8.1 10.5 9.7 Bacteria Betaproteobacteria 13490 Burkholderia ambifaria AMMD CP000442 NC_008392 Chromosome 3 0.3352 1013 1281472 1265 0.876987 cir 1 1 1 2.3 0.4 0.9 2 2 848 19.5 547000 67000 0.3101 5.84914 15 10 0 0 10 0 13.4 7.7 10 8.9 Bacteria Betaproteobacteria 13490 Burkholderia ambifaria AMMD CP000443 NC_008385 Plasmid 1 0.3424 45 43581 968.5 0.896675 cir 0 0 0 0.4 0.3 1.3 0 0 37 21.6 28000 0 1.2414 5.65652 0 0 0 0 0 0 14 5.6 8.6 6.8 Bacteria Betaproteobacteria 17411 Burkholderia ambifaria MC40-6 CP001025 NC_010551 Chromosome 1 0.331 3074 3443583 1120.2 0.869047 cir 4 4 4 2.6 1.8 1.1 60 60 71000 1826000 0.3956 5.85824 26 17 1 0 18 0 15.7 8.9 11 10.6 Bacteria Betaproteobacteria 17411 Burkholderia ambifaria MC40-6 CP001028 NC_010553 Plasmid pBMC401 0.3881 274 301592 1100.7 0.812392 cir 0 0 0 6.2 1.1 0.3 0 0 61000 202000 0.6406 5.56263 3 2 0 0 2 0 7.1 3.5 4.7 4.2 Bacteria Betaproteobacteria 17411 Burkholderia ambifaria MC40-6 CP001026 NC_010552 Chromosome 2 0.3346 2382 2769414 1162.6 0.858741 cir 1 1 1 2.5 1.2 0.9 6 6 6000 1360000 0.3511 5.85949 32 15 0 3 18 0 14.3 7.9 10.2 9.5 Bacteria Betaproteobacteria 17411 Burkholderia ambifaria MC40-6 CP001027 NC_010557 Chromosome 3 0.3413 967 1127947 1166.4 0.855088 cir 1 1 1 2.2 0.6 0.8 2 2 261000 828000 0.3518 5.82801 16 10 0 1 11 0 12.8 7.1 9.1 8.2 Bacteria Betaproteobacteria 13919 Burkholderia cenocepacia AU 1054 CP000378 NC_008060 Chromosome 1 0.3306 2965 3294563 1111.2 0.873787 cir 4 4 4 2.5 2.4 1.1 46 46 2569 15.4 5000 1348000 0.4017 5.86234 24 14 0 0 14 0 16 8.9 11.3 10.6 Bacteria Betaproteobacteria 13919 Burkholderia cenocepacia AU 1054 CP000379 NC_008061 Chromosome 2 0.3314 2472 2788459 1128 0.862627 cir 1 1 1 2.8 2.1 0.9 5 5 2011 22.9 2459000 1094000 0.3466 5.87511 32 15 0 2 17 0 14.5 8.1 10.5 9.8 Bacteria Betaproteobacteria 13919 Burkholderia cenocepacia AU 1054 CP000380 NC_008062 Chromosome 3 0.3296 1040 1196094 1150.1 0.871345 cir 1 1 1 2.3 0.4 0.9 16 16 926 12.3 384000 1001000 0.3338 5.87597 9 7 0 0 7 0 15.1 7.8 10.6 9.8 Bacteria Betaproteobacteria 13918 Burkholderia cenocepacia HI2424 CP000458 NC_008542 Chromosome 1 0.3322 3159 3483902 1102.8 0.875056 cir 4 4 4 2.5 1.8 1.1 60 60 2804 12.7 70000 1877000 0.4139 5.85167 21 13 0 0 13 0 15.9 8.6 11.2 10.5 Bacteria Betaproteobacteria 13918 Burkholderia cenocepacia HI2424 CP000461 NC_008545 Plasmid 1 0.3817 156 164857 1056.8 0.829731 cir 0 0 0 8.7 0.1 0.4 0 0 109 43.1 41000 149000 0.757 5.57924 0 0 0 0 0 0 7.3 4 5.7 4.8 Bacteria Betaproteobacteria 13918 Burkholderia cenocepacia HI2424 CP000459 NC_008543 Chromosome 2 0.3312 2686 2998664 1116.4 0.872951 cir 1 1 1 2.5 1.8 0.9 5 5 2198 22.2 2820000 1359000 0.3469 5.87676 36 17 0 3 20 0 14.6 8.1 10.6 9.9 Bacteria Betaproteobacteria 13918 Burkholderia cenocepacia HI2424 CP000460 NC_008544 Chromosome 3 0.3267 918 1055417 1149.7 0.883473 cir 1 1 1 2.7 0.3 0.9 2 2 781 17.5 362000 817000 0.2896 5.90098 13 9 0 0 9 0 15 8.2 10.6 9.8 Bacteria Betaproteobacteria 339 Burkholderia cenocepacia J2315 AM747720 NC_011000 Chromosome 1 0.3332 3536 3870082 1094.5 0.874241 cir 4 4 4 3.7 6 1.1 66 66 1000 1941000 0.4044 5.84737 23 14 0 0 14 0 15.8 8.7 11.1 10.5 Bacteria Betaproteobacteria 339 Burkholderia cenocepacia J2315 AM747721 NC_011001 Chromosome 2 0.3272 2849 3217062 1129.2 0.877537 cir 1 1 1 3 1.5 1 6 5 18000 1715000 0.3168 5.90028 38 19 0 5 24 0 15.6 8.6 11.1 10.5 Bacteria Betaproteobacteria 339 Burkholderia cenocepacia J2315 AM747722 NC_011002 Chromosome 3 0.3308 1 875977 875977 0.00150346 cir 1 1 1 2.4 1.1 0.9 0 2 873000 489000 0.2927 5.8768 0 0 0 0 0 0 14.7 8.2 10.3 9.5 Bacteria Betaproteobacteria 339 Burkholderia cenocepacia J2315 AM747723 NC_011003 Plasmid pBCJ2315 0.3724 99 92661 936 0.838303 cir 0 0 0 3.6 0 0.5 0 0 12000 67000 0.5331 5.63186 0 0 0 0 0 0 7 4.7 7 5 Bacteria Betaproteobacteria 17929 Burkholderia cenocepacia MC0-3 CP000958 NC_010508 Chromosome 1 0.3328 3160 3532883 1118 0.867151 cir 4 4 4 2.7 2 1.1 60 60 95000 1871000 0.4167 5.84947 23 14 0 0 14 0 15.6 8.6 10.9 10.4 Bacteria Betaproteobacteria 17929 Burkholderia cenocepacia MC0-3 CP000960 NC_010512 Chromosome 3 0.3378 1053 1224595 1163 0.863378 cir 1 1 1 2.7 1.2 0.8 2 2 748000 195000 0.3502 5.84443 14 9 0 0 9 0 13.6 7.4 9.8 8.7 Bacteria Betaproteobacteria 17929 Burkholderia cenocepacia MC0-3 CP000959 NC_010515 Chromosome 2 0.334 2795 3213911 1149.9 0.863889 cir 1 1 1 4 2 0.9 5 5 1536000 3137000 0.3373 5.86424 48 22 0 3 25 0 14.5 7.9 10.2 9.5 Bacteria Betaproteobacteria 171 Burkholderia mallei ATCC 23344 CP000011 NC_006349 Chromosome 2 0.3101 2029 2325379 1146.1 0.818317 cir 2 2 2 6.9 4.1 2 9 9 1526 33 4000 1089000 0.3018 5.97551 26 11 0 2 13 0 22.7 14.2 17.4 16.4 Bacteria Betaproteobacteria 171 Burkholderia mallei ATCC 23344 CP000010 NC_006348 Chromosome 1 0.3185 2996 3510148 1171.6 0.798011 cir 1 2 1 5.7 5.1 1.6 47 47 2598 15.3 2960000 1081000 0.4136 5.91971 26 12 0 1 13 0 20.7 12.8 15.5 14.9 Bacteria Betaproteobacteria 13943 Burkholderia mallei NCTC 10229 CP000545 NC_008835 Chromosome II 0.3106 2177 2284095 1049.2 0.84999 cir 2 2 2 5.6 5.3 1.9 9 9 1526 42.7 1514000 381000 0.3029 5.97285 26 12 0 2 14 0 22.5 14.1 17.3 16.3 Bacteria Betaproteobacteria 13943 Burkholderia mallei NCTC 10229 CP000546 NC_008836 Chromosome I 0.3185 3333 3458208 1037.6 0.862718 cir 1 2 1 5.4 5.1 1.6 47 47 2758 20.8 1375000 164000 0.4227 5.91931 25 13 0 1 14 0 20.7 12.9 15.5 14.9 Bacteria Betaproteobacteria 13946 Burkholderia mallei NCTC 10247 CP000547 NC_009079 Chromosome II 0.3104 2376 2352693 990.2 0.870554 cir 2 2 2 6.2 4.6 1.9 9 9 1580 50.4 19000 1185000 0.3006 5.97424 27 12 0 2 14 0 22.6 14.1 17.3 16.3 Bacteria Betaproteobacteria 13946 Burkholderia mallei NCTC 10247 CP000548 NC_009080 Chromosome I 0.3184 3476 3495687 1005.7 0.864907 cir 1 2 1 6.6 4.8 1.6 46 46 2761 25.9 2204000 978000 0.4206 5.92 24 13 0 1 14 0 20.7 12.9 15.5 15 Bacteria Betaproteobacteria 13947 Burkholderia mallei SAVP1 CP000525 NC_008784 Chromosome II 0.3108 1734 1734922 1000.5 0.870345 cir 1 2 1 6.3 3.9 2 7 7 1181 46.8 1169000 37000 0.3064 5.96971 18 8 0 2 10 0 22.3 13.9 17.1 16 Bacteria Betaproteobacteria 13947 Burkholderia mallei SAVP1 CP000526 NC_008785 Chromosome I 0.3185 3455 3497479 1012.3 0.866328 cir 1 3 1 5.6 6.7 1.6 48 48 2705 27.7 418000 1468000 0.4129 5.91925 25 13 0 1 14 0 20.7 12.9 15.6 14.9 Bacteria Betaproteobacteria 19401 Burkholderia multivorans ATCC 17616 AP009387 NC_010801 Chromosome 3 0.3422 806 919805 1141.2 0.840633 cir 1 1 1 2.2 3.2 0.9 2 2 4000 597000 0.3525 5.8196 12 5 0 1 6 0 13.2 8.4 10.6 9.4 Bacteria Betaproteobacteria 19401 Burkholderia multivorans ATCC 17616 AP009388 NC_010802 Plasmid pTGL1 0.3867 138 167422 1213.2 0.761549 cir 0 0 0 1.3 0.7 0.4 0 0 53000 109000 0.7108 5.55071 2 2 0 0 2 0 6.7 3.8 5.4 4 Bacteria Betaproteobacteria 19401 Burkholderia multivorans ATCC 17616 AP009385 NC_010804 Chromosome 1 0.3313 3127 3448421 1102.8 0.866986 cir 3 3 3 3.2 2.7 1.2 59 59 0 1827000 0.3859 5.86504 22 14 0 0 14 0 17.1 10.1 12.5 11.7 Bacteria Betaproteobacteria 19401 Burkholderia multivorans ATCC 17616 AP009386 NC_010805 Chromosome 2 0.3287 2159 2473162 1145.5 0.862392 cir 1 1 1 3.7 2 1.1 5 4 2463000 1228000 0.3389 5.89886 35 18 0 2 20 0 16.9 9.5 12.4 11.4 Bacteria Betaproteobacteria 17407 Burkholderia multivorans ATCC 17616 CP000871 NC_010070 Plasmid pBMUL01 0.3867 138 167422 1213.2 0.76619 cir 0 0 0 1.3 0.7 0.4 0 0 60000 5000 0.7108 5.55071 2 2 0 0 2 0 6.7 3.8 5.4 4 Bacteria Betaproteobacteria 17407 Burkholderia multivorans ATCC 17616 CP000869 NC_010086 Chromosome 2 0.3287 2152 2472928 1149.1 0.870952 cir 1 1 1 3.7 2 1.1 4 4 13000 1247000 0.339 5.89884 35 18 0 2 20 0 16.9 9.5 12.4 11.4 Bacteria Betaproteobacteria 17407 Burkholderia multivorans ATCC 17616 CP000870 NC_010087 Chromosome 3 0.3422 823 919806 1117.6 0.850062 cir 1 1 1 2.2 3.2 0.9 2 2 1000 328000 0.3525 5.81961 13 6 0 1 7 0 13.2 8.4 10.6 9.4 Bacteria Betaproteobacteria 17407 Burkholderia multivorans ATCC 17616 CP000868 NC_010084 Chromosome 1 0.3313 3146 3448466 1096.1 0.876821 cir 3 3 3 3.2 2.7 1.2 59 59 76000 1696000 0.3859 5.86504 22 14 0 0 14 0 17.1 10.1 12.5 11.7 Bacteria Betaproteobacteria 17409 Burkholderia phymatum STM815 CP001043 NC_010622 Chromosome 1 0.3697 3072 3479187 1132.5 0.86072 cir 4 4 4 2.2 1.1 0.7 56 56 3450000 1232000 0.4974 5.68508 39 23 0 4 27 0 8.9 4.8 6.3 5.9 Bacteria Betaproteobacteria 17409 Burkholderia phymatum STM815 CP001045 NC_010625 Plasmid pBPHY01 0.3813 1626 1904893 1171.5 0.840102 cir 0 0 0 2.1 1.3 0.5 1 1 1781000 758000 0.5036 5.62508 25 12 0 5 17 0 6.6 3.7 5 4.5 Bacteria Betaproteobacteria 17409 Burkholderia phymatum STM815 CP001044 NC_010623 Chromosome 2 0.3767 2349 2697374 1148.3 0.84721 cir 2 2 2 2.1 1.8 0.5 5 5 1118000 2606000 0.4802 5.65827 45 21 1 0 22 0 8 4.4 5.9 5.3 Bacteria Betaproteobacteria 17409 Burkholderia phymatum STM815 CP001046 NC_010627 Plasmid pBPHY02 0.4082 449 595108 1325.4 0.700769 cir 0 0 0 6.5 6.6 0.2 0 0 320000 83000 0.5838 5.46419 3 0 0 3 3 0 5.1 2.8 3.3 3.5 Bacteria Betaproteobacteria 17463 Burkholderia phytofirmans PsJN CP001052 NC_010681 Chromosome 1 0.3742 3922 4467537 1139.1 0.853503 cir 3 3 3 2.2 2.3 0.7 55 55 4411000 2454000 0.4629 5.65477 49 28 0 1 29 0 8.5 4.3 5.6 5.4 Bacteria Betaproteobacteria 17463 Burkholderia phytofirmans PsJN CP001054 NC_010679 Plasmid pBPHYT01 0.4169 167 121122 725.3 0.848995 cir 0 0 0 2.6 0.4 0.3 0 0 39000 116000 0.9346 5.41429 2 1 0 0 1 0 4.6 2.5 4 2.5 Bacteria Betaproteobacteria 17463 Burkholderia phytofirmans PsJN CP001053 NC_010676 Chromosome 2 0.3794 3152 3625999 1150.4 0.852218 cir 3 3 3 1.9 2.2 0.5 8 8 3405000 1342000 0.4427 5.63545 51 22 0 5 27 0 7.2 3.9 5.4 4.8 Bacteria Betaproteobacteria 16182 Burkholderia pseudomallei 1106a CP000572 NC_009076 Chromosome I 0.3204 4019 3988455 992.4 0.872727 cir 3 3 3 2.8 2.6 1.6 52 52 2887 39.2 2000 2013000 0.4046 5.91202 29 16 0 3 19 0 20.6 12.6 15.5 14.8 Bacteria Betaproteobacteria 16182 Burkholderia pseudomallei 1106a CP000573 NC_009078 Chromosome II 0.3136 3164 3100794 980 0.889468 cir 1 1 1 4.2 2.8 1.9 7 7 1936 63.4 1000 1475000 0.315 5.96141 34 14 0 3 17 0 22.2 13.5 16.8 15.9 Bacteria Betaproteobacteria 13954 Burkholderia pseudomallei 1710b CP000124 NC_007434 Chromosome I 0.3239 3736 4126292 1104.5 0.855027 cir 3 3 3 2.5 2.3 1.6 53 53 3406 9.7 225000 2390000 0.4254 5.89417 27 16 0 3 19 0 20.1 12.3 15.1 14.4 Bacteria Betaproteobacteria 13954 Burkholderia pseudomallei 1710b CP000125 NC_007435 Chromosome II 0.3154 2611 3181762 1218.6 0.862672 cir 1 1 1 4.3 3.4 1.8 7 7 2175 20 1842000 121000 0.3245 5.95102 34 13 0 3 16 0 21.8 13.3 16.5 15.6 Bacteria Betaproteobacteria 13953 Burkholderia pseudomallei 668 CP000570 NC_009074 Chromosome I 0.3198 3951 3912947 990.4 0.872079 cir 3 3 3 2.3 2 1.7 52 52 2855 38.4 7000 2008000 0.4046 5.91571 28 16 0 3 19 0 20.9 12.8 15.7 15 Bacteria Betaproteobacteria 13953 Burkholderia pseudomallei 668 CP000571 NC_009075 Chromosome II 0.3137 3279 3127456 953.8 0.894692 cir 1 1 1 3.4 2.8 1.8 7 7 2020 62.3 3000 1527000 0.3184 5.95935 39 15 0 3 18 0 22 13.4 16.8 15.8 Bacteria Betaproteobacteria 178 Burkholderia pseudomallei K96243 BX571965 NC_006350 Chromosome 1 0.3228 3460 4074542 1177.6 0.839573 cir 3 3 3 2.4 2 1.6 53 53 2983 16 4000 1994000 0.4315 5.89959 29 16 0 2 18 0 20.3 12.5 15.3 14.6 Bacteria Betaproteobacteria 178 Burkholderia pseudomallei K96243 BX571966 NC_006351 Chromosome 2 0.3151 2395 3173005 1324.8 0.828426 cir 1 1 1 4.2 3 1.8 8 7 1957 22.4 3161000 1518000 0.3196 5.95346 33 14 0 3 17 0 21.9 13.3 16.6 15.7 Bacteria Betaproteobacteria 10695 Burkholderia sp. 383 CP000150 NC_007509 Chromosome 3 0.3473 1209 1395069 1153.9 0.855847 cir 1 1 1 2.2 1.3 0.6 2 2 997 21.3 2000 667000 0.3475 5.78976 14 7 0 0 7 0 10.9 6.2 8.2 7.1 Bacteria Betaproteobacteria 10695 Burkholderia sp. 383 CP000152 NC_007511 Chromosome 2 0.3327 3174 3587082 1130.1 0.875254 cir 1 1 1 2.5 1.3 0.9 5 5 2635 20.5 2000 1786000 0.3399 5.86644 38 21 0 5 26 0 13.7 7.4 9.6 9 Bacteria Betaproteobacteria 10695 Burkholderia sp. 383 CP000151 NC_007510 Chromosome 1 0.3379 3334 3694126 1108 0.876878 cir 4 4 4 2.3 1.6 1 60 60 2964 12.5 77000 2012000 0.4138 5.82421 22 17 0 0 17 0 14.1 7.9 9.7 9.5 Bacteria Betaproteobacteria 10774 Burkholderia thailandensis E264 CP000085 NC_007650 Chromosome II 0.3193 2358 2914771 1236.1 0.866511 cir 1 1 1 2.7 2.6 1.4 6 6 1926 22.4 4000 1519000 0.3344 5.9343 35 14 0 3 17 0 19.8 12.1 15.6 14.1 Bacteria Betaproteobacteria 10774 Burkholderia thailandensis E264 CP000086 NC_007651 Chromosome I 0.3271 3276 3809201 1162.8 0.865882 cir 3 3 3 3.3 2.8 1.3 52 52 2893 13.2 9000 2649000 0.4074 5.87823 25 15 0 2 17 0 18.4 11.2 14.1 13 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000621 NC_009226 Plasmid pBVIE05 0.3831 111 88096 793.7 0.905399 cir 0 0 0 0 0 0.5 0 0 44 152.3 73000 44000 0.6584 5.59174 0 0 0 0 0 0 8.6 3.6 4.2 5 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000616 NC_009254 Chromosome 3 0.3356 1114 1241007 1114 0.850409 cir 1 1 1 4.8 4 0.9 2 2 869 28.2 16000 773000 0.2552 5.85032 26 15 1 0 16 0 13.8 9 11.2 10.2 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000618 NC_009227 Plasmid pBVIE02 0.3825 263 265616 1009.9 0.856052 cir 0 0 0 4.4 6.3 0.4 0 0 195 34.9 26000 198000 0.654 5.56527 3 2 0 0 2 0 6.6 3.8 4.7 3.6 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000615 NC_009255 Chromosome 2 0.3317 2096 2411759 1150.6 0.850353 cir 1 1 1 3.8 3.3 1 4 4 1691 24 524000 1848000 0.3017 5.87011 29 15 0 3 18 0 15.4 9.2 11.6 10.8 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000620 NC_009228 Plasmid pBVIE04 0.3896 107 107231 1002.2 0.866373 cir 0 0 0 6.3 1.6 0.7 0 0 79 35.4 33000 67000 0.9923 5.52542 0 0 0 0 0 0 6.8 3 5.7 3.8 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000614 NC_009256 Chromosome 1 0.3351 3274 3652814 1115.7 0.862935 cir 4 4 4 3.3 2.9 1.2 61 61 2823 16 86000 1807000 0.4236 5.82749 20 13 0 1 14 0 16 9.3 11.5 10.9 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000619 NC_009229 Plasmid pBVIE03 0.4018 249 226679 910.4 0.883068 cir 0 0 0 0 2.2 0.3 0 0 136 83.1 71000 198000 0.6697 5.48498 0 0 0 0 0 0 4.5 2.5 3.6 3.1 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 CP000617 NC_009230 Plasmid pBVIE01 0.4176 403 397868 987.3 0.83904 cir 0 0 0 3.5 4.6 0.3 0 0 264 52.7 252000 89000 1.0405 5.38929 1 0 0 0 0 0 4.2 2 3.5 2.5 Bacteria Betaproteobacteria 254 Burkholderia xenovorans LB400 CP000271 NC_007952 Chromosome 2 0.3716 2960 3363523 1136.3 0.865993 cir 3 3 3 2.3 1.3 0.6 8 7 2411 22.8 9000 1691000 0.4418 5.66781 41 22 0 2 24 0 7.8 4.3 5.7 5.2 Bacteria Betaproteobacteria 254 Burkholderia xenovorans LB400 CP000272 NC_007953 Chromosome 3 0.3827 1312 1471779 1121.8 0.852156 cir 0 0 0 1.8 1.3 0.3 0 0 1101 19.2 1440000 704000 0.5421 5.59474 5 4 0 1 5 0 5.9 3.4 4.6 4.1 Bacteria Betaproteobacteria 254 Burkholderia xenovorans LB400 CP000270 NC_007951 Chromosome 1 0.3724 4430 4895836 1105.2 0.859058 cir 3 3 3 4.8 3.6 0.7 57 57 3687 20.2 260000 2500000 0.4803 5.65259 47 25 0 3 28 0 8.7 4.4 5.9 5.5 Bacteria Other Bacteria 13466 Caldicellulosiruptor saccharolyticus DSM 8903 CP000679 NC_009437 Chromosome 0.6475 2679 2970275 1108.7 0.861735 cir 3 3 3 8.7 8.3 0.5 46 46 2347 14.1 5000 2083000 3.7859 4.37478 32 5 0 0 5 0 8.2 3.9 5.4 6 Archaea Crenarchaeota 17421 Caldivirga maquilingensis IC-167 CP000852 NC_009954 Chromosome 0.569 1963 2077567 1058.4 0.869111 cir 0 1 1 1.5 1.5 0.5 42 45 1002000 1647000 1.3242 4.63797 0 0 0 0 0 0 7.1 2.1 3.6 3.5 Bacteria Epsilonproteobacteria 17159 Campylobacter concisus 13826 CP000793 NC_009795 Plasmid pCCON31 0.6839 33 30949 937.8 0.820996 cir 0 0 0 1 0 0.7 0 0 29000 18000 2.1778 4.22888 0 0 0 0 0 0 13.8 6.7 9.2 11.2 Bacteria Epsilonproteobacteria 17159 Campylobacter concisus 13826 CP000792 NC_009802 Chromosome 0.6057 2024 2052007 1013.8 0.893571 cir 3 3 3 4.3 2.8 0.6 46 46 118000 1016000 1.5927 4.53012 14 3 0 0 3 0 9 3.6 5.3 5.5 Bacteria Epsilonproteobacteria 17159 Campylobacter concisus 13826 CP000794 NC_009796 Plasmid pCCON16 0.6654 23 16457 715.5 0.887586 cir 0 0 0 1.1 0 0.8 0 0 15000 4000 2.0417 4.28471 0 0 0 0 0 0 10.3 5.5 6.9 7.4 Bacteria Epsilonproteobacteria 17161 Campylobacter curvus 525.92 CP000767 NC_009715 Chromosome 0.5546 1931 1971264 1020.9 0.861663 cir 3 3 3 2.5 2.4 0.5 46 46 1928000 1007000 1.1936 4.78719 15 5 0 0 5 0 6.6 3 4 4.5 Bacteria Epsilonproteobacteria 16293 Campylobacter fetus subsp. fetus 82-40 CP000487 NC_008599 Chromosome 0.6669 1719 1773615 1031.8 0.901137 cir 3 3 3 3.3 1 0.7 41 43 1489 15.4 1763000 907000 1.5321 4.31209 14 8 0 0 8 0 11.1 6.1 7.3 9 Bacteria Epsilonproteobacteria 20083 Campylobacter hominis ATCC BAA-381 CP000775 NC_009713 Plasmid pCH4 0.6585 5 3678 735.6 0.922512 cir 0 0 0 0 0 1.4 0 0 2000 0 3.0451 4.2344 0 0 0 0 0 0 19.5 5.8 1 15.9 Bacteria Epsilonproteobacteria 20083 Campylobacter hominis ATCC BAA-381 CP000776 NC_009714 Chromosome 0.6827 1682 1711273 1017.4 0.842181 cir 3 3 3 3.4 1.3 0.8 44 44 1604000 876000 1.7857 4.35785 9 5 0 0 5 0 16.9 9.9 12 13.8 Bacteria Epsilonproteobacteria 303 Campylobacter jejuni RM1221 CP000025 NC_003912 Chromosome 0.6969 1838 1777831 967.3 0.908422 cir 3 3 3 2.6 1.3 0.9 44 44 1499 22.6 7000 853000 2.7514 4.18943 11 2 0 0 2 0 15.4 8.4 10.4 11.8 Bacteria Epsilonproteobacteria 17163 Campylobacter jejuni subsp. doylei 269.97 CP000768 NC_009707 Chromosome 0.6943 1731 1845106 1065.9 0.824714 cir 3 3 3 5.7 3.5 0.8 44 44 1845000 911000 2.8502 4.20206 11 2 0 0 2 0 14.9 8.3 10.5 11.8 Bacteria Epsilonproteobacteria 16135 Campylobacter jejuni subsp. jejuni 81-176 CP000550 NC_008770 Plasmid pVir 0.7411 53 37473 707 0.850879 cir 0 0 0 6.9 0 1.4 0 0 21 152.4 10000 31000 5.0943 4.03147 0 0 0 0 0 0 25.3 13.4 17.2 24 Bacteria Epsilonproteobacteria 16135 Campylobacter jejuni subsp. jejuni 81-176 CP000538 NC_008787 Chromosome 0.6938 1653 1616554 978 0.93534 cir 3 3 3 3.1 0.4 0.9 44 44 1456 13.5 7000 775000 2.6727 4.20369 11 2 0 0 2 0 14.8 8.3 10.3 11.4 Bacteria Epsilonproteobacteria 16135 Campylobacter jejuni subsp. jejuni 81-176 CP000549 NC_008790 Plasmid pTet 0.7091 52 45025 865.9 0.92191 lin 0 0 0 0.7 0 0.4 0 0 36 44.4 2.965 4.1742 0 0 0 0 0 0 16.7 9.5 12.2 14.2 Bacteria Epsilonproteobacteria 17953 Campylobacter jejuni subsp. jejuni 81116 CP000814 NC_009839 Chromosome 0.6946 1626 1628115 1001.3 0.93898 cir 3 3 3 3 0.4 0.9 44 44 7000 781000 2.6898 4.20115 11 2 0 0 2 0 14.9 8.4 10.4 11.5 Bacteria Epsilonproteobacteria 8 Campylobacter jejuni subsp. jejuni NCTC 11168 AL111168 NC_002163 Chromosome 0.6945 1643 1641481 999.1 0.943622 cir 3 3 3 3 0.3 0.9 43 44 1453 13.1 1000 775000 2.691 4.20032 11 2 0 0 2 0 15 8.3 10.2 11.4 Bacteria Epsilonproteobacteria 12517 Campylobacter lari RM2100 CP000932 NC_012039 Chromosome 0.703 1504 1525460 1014.3 0.932942 cir 3 3 3 2.9 2 1 46 46 0 725000 2.615 4.17869 11 4 0 0 4 0 15.7 8.5 10.6 12 Bacteria Epsilonproteobacteria 12517 Campylobacter lari RM2100 CP000933 NC_012040 Megaplasmid pCL2100 0.7314 42 46201 1100 0.871042 cir 0 0 0 8.8 0 0.4 0 0 13000 39000 3.9003 4.07552 0 0 0 0 0 0 20.4 11.7 14.9 17.1 Bacteria Bacteroidetes/Chlorobi 19981 Candidatus Amoebophilus asiaticus 5a2 CP001102 NC_010830 Chromosome 0.6495 1283 1884364 1468.7 0.768482 cir 1 1 1 17.9 12.7 0.4 35 35 478000 1318000 2.7452 4.32973 3 3 0 0 3 0 7.3 3.4 4.8 5.2 Bacteria Bacteroidetes/Chlorobi 29025 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 AP010658 NC_011561 Plasmid pCFPG2 0.6498 28 37111 1325.4 0.61467 cir 0 0 0 3.1 0 0.8 0 0 27000 8000 4.2306 4.37081 0 0 0 0 0 0 7.2 4 5 5.6 Bacteria Bacteroidetes/Chlorobi 29025 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 AP010656 NC_011565 Chromosome 0.6734 758 1114206 1469.9 0.711476 cir 1 2 1 2.8 2.4 0.6 38 38 378000 866000 3.5953 4.33626 0 0 0 0 0 0 8.2 5.1 6.4 6.7 Bacteria Bacteroidetes/Chlorobi 29025 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 AP010659 NC_011562 Plasmid pCFPG3 0.6436 25 31893 1275.7 0.595585 cir 0 0 0 2 0 1.1 0 0 3000 17000 4.3176 4.39477 0 0 0 0 0 0 7.2 3.5 4.6 7.5 Bacteria Bacteroidetes/Chlorobi 29025 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 AP010660 NC_011563 Plasmid pCFPG4 0.5572 4 4149 1037.2 0.752711 cir 0 0 0 0 0 0 0 0 3000 1000 2.4825 4.79653 0 0 0 0 0 0 7.8 0.8 10.6 6.9 Bacteria Bacteroidetes/Chlorobi 29025 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 AP010657 NC_011564 Plasmid pCFPG1 0.6403 37 37560 1015.1 0.598269 cir 0 0 0 7 0.4 0.7 0 0 35000 10000 4.393 4.40689 0 0 0 0 0 0 6.9 3.9 5.2 5 Bacteria Gammaproteobacteria 443 Candidatus Blochmannia floridanus BX248583 NC_005061 Chromosome 0.7262 589 705557 1197.9 0.83838 cir 1 1 1 0.1 0.2 0.7 37 37 579 1.7 675000 372000 1.3463 4.24991 0 0 0 0 0 0 16.4 11.1 12.9 15.1 Bacteria Gammaproteobacteria 13875 Candidatus Blochmannia pennsylvanicus str. BPEN CP000016 NC_007292 Chromosome 0.7044 610 791654 1297.8 0.766399 cir 1 1 1 0.1 0 0.6 39 40 606 0.7 749000 280000 1.4006 4.34025 0 0 0 0 0 0 12.9 10.1 11.9 11.7 Bacteria Gammaproteobacteria 17977 Candidatus Carsonella ruddii PV AP009180 NC_008512 Chromosome 0.8344 182 159662 877.3 0.932439 cir 0 1 1 0.1 0.1 3.2 28 28 134 35.8 147000 95000 5.1465 3.83099 0 0 0 0 0 0 53.9 49.7 52 53.2 Bacteria Firmicutes 21047 Candidatus Desulforudis audaxviator MP104C CP000860 NC_010424 Chromosome 0.3915 2157 2349476 1089.2 0.851537 cir 2 2 2 4.8 4.6 0.5 45 45 2000 1207000 1.8507 5.38986 16 7 0 0 7 0 6.6 3.2 4 4 Archaea Other Archaea 16525 Candidatus Korarchaeum cryptofilum OPF8 CP000968 NC_010482 Chromosome 0.51 1602 1590757 993 0.895481 cir 0 1 1 0.9 0.9 0.4 45 46 764000 1580000 5.751 4.69382 0 0 0 0 0 0 5.3 2.1 2.4 3.5 Archaea Euryarchaeota 18505 Candidatus Methanoregula boonei 6A8 CP000780 NC_009712 Chromosome 0.4549 2450 2542943 1037.9 0.859571 cir 0 1 1 2.8 1.9 0.3 47 48 2542000 1238000 2.8952 5.16448 57 3 11 0 14 0 4.6 1.9 3.1 2.2 Archaea Euryarchaeota 29381 Candidatus Methanosphaerula palustris E1-9c CP001338 NC_011832 Chromosome 0.4465 2655 2922917 1100.9 0.840499 cir 0 3 3 7.8 4.6 0.4 55 56 3000 1401000 2.6609 5.17322 44 13 3 0 16 0 5.6 2 3.5 2.3 Bacteria Alphaproteobacteria 13989 Candidatus Pelagibacter ubique HTCC1062 CP000084 NC_007205 Chromosome 0.7032 1354 1308759 966.6 0.955264 cir 1 1 1 1.3 0 0.8 32 32 1190 13.8 335000 996000 2.8943 4.19711 5 4 0 0 4 0 14.6 8.5 9.4 12.6 Bacteria Firmicutes 29469 Candidatus Phytoplasma australiense AM422018 NC_010544 Chromosome 0.7258 839 879959 1048.8 0.743795 cir 2 2 2 34.1 30.9 1.2 35 35 816000 540000 4.3175 4.14581 0 0 0 0 0 0 24.3 15.2 17.1 21.9 Bacteria Other Bacteria 25335 Candidatus Phytoplasma mali CU469464 NC_011047 Chromosome 0.7861 497 601943 1211.2 0.78184 lin 2 2 2 8.7 17.2 2.7 32 32 3.2613 3.96359 0 0 0 0 0 0 37.4 28.7 31.1 35.5 Bacteria Chlamydiae/Verrucomicrobia 10700 Candidatus Protochlamydia amoebophila UWE25 BX908798 NC_005861 Chromosome 0.6528 2031 2414465 1188.8 0.821599 cir 3 3 2 13.1 8.2 0.4 35 35 1601 26.9 2401000 1092000 3.648 4.36686 2 2 0 0 2 0 9.6 5.6 6.8 6.8 Bacteria Gammaproteobacteria 16841 Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) CP000488 NC_008610 Chromosome 0.6597 976 1160782 1189.3 0.791465 cir 1 1 1 0.1 0.4 0.4 36 36 910 7.3 15000 590000 1.0008 4.45473 2 1 0 1 2 0 7.1 4.2 5.4 5.8 Bacteria Bacteroidetes/Chlorobi 19617 Candidatus Sulcia muelleri GWSS CP000770 NC_010118 Chromosome 0.7756 227 245530 1081.6 0.91803 cir 1 1 1 1.2 0 2.9 31 31 211000 133000 4.8833 3.97524 0 0 0 0 0 0 33.3 23.2 26.1 31.9 Bacteria Gammaproteobacteria 18267 Candidatus Vesicomyosocius okutanii HA AP009247 NC_009465 Chromosome 0.6841 939 1022154 1088.6 0.850969 cir 1 1 1 0 0.3 0.5 35 36 872 7.7 14000 507000 1.1004 4.34453 2 1 0 1 2 0 9.4 5.7 7 7.7 Bacteria Firmicutes 253 Carboxydothermus hydrogenoformans Z-2901 CP000141 NC_007503 Chromosome 0.5795 2620 2401520 916.6 0.900627 cir 4 4 4 3.7 1.1 0.4 50 50 2071 26.5 2399000 1219000 4.0613 4.6094 19 9 0 0 9 0 6.4 3.2 4.6 4.6 Bacteria Alphaproteobacteria 298 Caulobacter crescentus CB15 AE005673 NC_002696 Chromosome 0.3279 3737 4016947 1074.9 0.902393 cir 2 2 2 3.5 2.4 0.9 51 51 3152 18.6 113000 2026000 0.6923 5.69868 63 41 3 1 54 9 11.9 5.7 8 6.4 Bacteria Alphaproteobacteria 32027 Caulobacter crescentus NA1000 CP001340 NC_011916 Chromosome 0.3283 3877 4042929 1042.8 0.911854 cir 2 2 2 3.5 2.5 0.9 51 51 110000 2052000 0.6915 5.69688 63 41 3 1 54 9 11.8 5.7 7.9 6.4 Bacteria Alphaproteobacteria 16306 Caulobacter sp. K31 CP000929 NC_010333 Plasmid pCAUL02 0.3573 165 177878 1078 0.823458 cir 0 0 0 2.9 2.6 0.5 0 0 70000 152000 0.7022 5.58765 5 3 0 0 3 0 6.9 4.3 5.1 4.6 Bacteria Alphaproteobacteria 16306 Caulobacter sp. K31 CP000927 NC_010338 Chromosome 0.3254 5061 5477872 1082.4 0.879642 cir 2 2 2 5.3 4 0.9 49 49 5243000 2916000 0.5653 5.71207 76 49 5 2 66 10 12.9 5.9 8.5 6.9 Bacteria Alphaproteobacteria 16306 Caulobacter sp. K31 CP000928 NC_010335 Plasmid pCAUL01 0.33 212 233649 1102.1 0.897021 cir 0 0 0 0.4 0.1 0.6 0 0 95000 167000 0.4828 5.69415 1 1 0 0 1 0 9.6 5.3 7.6 5.8 Bacteria Gammaproteobacteria 28329 Cellvibrio japonicus Ueda107 CP000934 NC_010995 Chromosome 0.4801 3754 4576573 1219.1 0.903289 cir 3 3 3 3.3 1.4 0.3 48 48 4572000 2111000 0.8315 5.14006 63 26 0 1 27 0 4.2 1.6 3.1 2.2 Bacteria Chlamydiae/Verrucomicrobia 229 Chlamydia muridarum Nigg AE002160 NC_002620 Chromosome 0.5966 904 1072950 1186.9 0.895815 cir 2 2 2 1.7 0.3 0.3 37 37 810 11.6 1000 534000 4.7423 4.49168 1 1 0 0 1 0 4.4 2.6 4 3.6 Bacteria Chlamydiae/Verrucomicrobia 229 Chlamydia muridarum Nigg AE002162 NC_002182 Plasmid pMoPn 0.6428 7 7501 1071.6 0.782962 cir 0 0 0 0 0 0.4 0 0 7 0 3000 7000 3.2396 4.33208 0 0 0 0 0 0 4.7 7.1 4.8 3.9 Bacteria Chlamydiae/Verrucomicrobia 28583 Chlamydia trachomatis 434/Bu AM884176 NC_010287 Chromosome 0.5867 889 1038842 1168.6 0.8981 cir 2 2 2 1.2 0 0.3 37 37 0 516000 4.7089 4.52193 1 1 0 0 1 0 4.1 2.4 3.9 3.6 Bacteria Chlamydiae/Verrucomicrobia 13885 Chlamydia trachomatis A/HAR-13 CP000051 NC_007429 Chromosome 0.587 911 1044459 1146.5 0.898366 cir 2 2 2 1.2 0 0.2 37 37 817 11.5 723000 197000 4.7088 4.52072 1 1 0 0 1 0 4.1 2.3 3.9 3.5 Bacteria Chlamydiae/Verrucomicrobia 13885 Chlamydia trachomatis A/HAR-13 CP000052 NC_007430 Plasmid pCTA 0.6373 8 7510 938.8 0.918908 cir 0 0 0 1.1 0 0.3 0 0 8 0 6000 3000 3.0626 4.35267 0 0 0 0 0 0 5.2 3.6 3.5 5.5 Bacteria Chlamydiae/Verrucomicrobia 45 Chlamydia trachomatis D/UW-3/CX AE001273 NC_000117 Chromosome 0.5869 894 1042519 1166.1 0.896201 cir 2 2 2 1.2 0 0.2 37 37 809 10.5 720000 197000 4.7107 4.52095 1 1 0 0 1 0 4.1 2.4 3.9 3.5 Bacteria Chlamydiae/Verrucomicrobia 28585 Chlamydia trachomatis L2b/UCH-1/proctitis AM884177 NC_010280 Chromosome 0.5867 889 1038869 1168.6 0.898125 cir 2 2 2 1.2 0 0.3 37 37 0 516000 4.708 4.52193 1 1 0 0 1 0 4.1 2.4 3.9 3.6 Bacteria Chlamydiae/Verrucomicrobia 355 Chlamydophila abortus S26/3 CR848038 NC_004552 Chromosome 0.6013 961 1144377 1190.8 0.903134 cir 1 1 1 0.8 0.9 0.2 38 38 867 10.8 0 574000 3.4923 4.51257 1 1 0 0 1 0 4.4 2.7 3.9 3.5 Bacteria Chlamydiae/Verrucomicrobia 228 Chlamydophila caviae GPIC AE015925 NC_003361 Chromosome 0.6078 998 1173390 1175.7 0.891481 cir 1 1 1 0.6 0.4 0.3 0 38 887 12.5 0 583000 3.5887 4.47216 1 1 0 0 1 0 4.7 3 4.7 3.7 Bacteria Chlamydiae/Verrucomicrobia 228 Chlamydophila caviae GPIC AE015926 NC_004720 Plasmid pCpGP1 0.6631 7 7966 1138 0.777178 cir 0 0 0 12 0 0.9 0 0 7 0 4000 1000 1.7324 4.26772 0 0 0 0 0 0 8 4 7 5.7 Bacteria Chlamydiae/Verrucomicrobia 370 Chlamydophila felis Fe/C-56 AP006861 NC_007899 Chromosome 0.6062 1005 1166239 1160.4 0.90861 cir 1 1 1 0.7 0.5 0.3 38 38 897 12 9000 585000 3.6929 4.47689 1 1 0 0 1 0 4.8 2.9 4.2 3.8 Bacteria Chlamydiae/Verrucomicrobia 370 Chlamydophila felis Fe/C-56 AP006862 NC_007900 Plasmid pCfe1 0.6609 8 7552 944 0.958951 cir 0 0 0 1.2 0 0 0 0 8 0 3000 0 2.304 4.28296 0 0 0 0 0 0 9.6 4 7.2 4.2 Bacteria Chlamydiae/Verrucomicrobia 247 Chlamydophila pneumoniae AR39 AE002161 NC_002179 Chromosome 0.5942 1110 1229853 1108 0.886275 cir 1 1 1 1.8 0.1 0.3 38 38 924 20.1 0 626000 4.116 4.48454 1 1 0 0 1 0 4.5 2.8 4 3.7 Bacteria Chlamydiae/Verrucomicrobia 248 Chlamydophila pneumoniae CWL029 AE001363 NC_000922 Chromosome 0.5942 1052 1230230 1169.4 0.881609 cir 1 1 1 1.8 0.1 0.3 38 38 932 12.9 841000 216000 4.1163 4.48467 1 1 0 0 1 0 4.6 2.8 4 3.7 Bacteria Chlamydiae/Verrucomicrobia 257 Chlamydophila pneumoniae J138 BA000008 NC_002491 Chromosome 0.5942 1069 1226565 1147.4 0.894541 cir 1 1 1 1.4 0.1 0.3 38 38 941 13.6 840000 217000 4.1111 4.48478 1 1 0 0 1 0 4.5 2.8 4 3.7 Bacteria Chlamydiae/Verrucomicrobia 420 Chlamydophila pneumoniae TW-183 AE009440 NC_005043 Chromosome 0.5942 1113 1225935 1101.5 0.899406 cir 1 1 1 1.3 0.1 0.3 38 38 939 18.5 837000 215000 4.1128 4.48483 1 1 0 0 1 0 4.5 2.9 4 3.7 Bacteria Bacteroidetes/Chlorobi 29213 Chlorobaculum parvum NCIB 8327 CP001099 NC_011027 Chromosome 0.442 2043 2289249 1120.5 0.869078 cir 2 2 2 1.3 0.3 0.4 49 49 5000 1134000 1.5602 5.25335 13 9 0 0 9 0 5.4 2.3 3.3 3 Bacteria Bacteroidetes/Chlorobi 13921 Chlorobium chlorochromatii CaD3 CP000108 NC_007514 Chromosome 0.5572 2002 2572079 1284.8 0.881529 cir 1 1 1 9.2 2.5 0.3 45 45 1683 19 2559000 1110000 1.7285 4.84064 3 2 0 0 2 0 5.6 2.3 3.9 3.2 Bacteria Bacteroidetes/Chlorobi 12606 Chlorobium limicola DSM 245 CP001097 NC_010803 Chromosome 0.4868 2434 2763181 1135.2 0.861155 cir 2 2 2 5.2 2.5 0.4 48 48 2000 1340000 2.3587 5.05827 16 10 0 0 10 0 5.1 1.7 2.9 2.2 Bacteria Bacteroidetes/Chlorobi 12608 Chlorobium phaeobacteroides BS1 CP001101 NC_010831 Chromosome 0.5107 2469 2736403 1108.3 0.829027 cir 2 2 2 7.7 5.5 0.7 46 46 2000 1488000 3.0654 4.93484 7 4 0 0 4 0 4.6 1.5 2.7 2.5 Bacteria Bacteroidetes/Chlorobi 12609 Chlorobium phaeobacteroides DSM 266 CP000492 NC_008639 Chromosome 0.5165 2650 3133902 1182.6 0.840029 cir 2 2 2 10 5.6 0.3 47 47 2165 22.4 3021000 1428000 2.8211 4.93825 15 6 0 0 6 0 4.8 1.7 3.1 2.5 Bacteria Bacteroidetes/Chlorobi 12607 Chlorobium phaeovibrioides DSM 265 CP000607 NC_009337 Chromosome 0.4701 1753 1966858 1122 0.910667 cir 1 1 1 1.8 0.8 0.3 45 45 1579 11 2000 979000 2.8635 5.08178 11 6 0 0 6 0 4.2 1.5 2.5 2.2 Bacteria Bacteroidetes/Chlorobi 302 Chlorobium tepidum TLS AE006470 NC_002932 Chromosome 0.4347 2255 2154946 955.6 0.881066 cir 2 2 2 1.6 2 0.4 0 50 1672 34.9 2152000 1018000 1.5974 5.28647 10 7 0 0 7 0 5.6 2.3 3.4 3.2 Bacteria Chloroflexi 16708 Chloroflexus aggregans DSM 9485 CP001337 NC_011831 Chromosome 0.4357 3730 4684931 1256 0.864594 cir 3 3 3 5.1 1.5 0.4 48 48 2260000 278000 0.729 5.36463 83 46 2 10 58 0 6.4 2.1 3.7 3.2 Bacteria Chloroflexi 59 Chloroflexus aurantiacus J-10-fl CP000909 NC_010175 Chromosome 0.433 3853 5258541 1364.8 0.803551 cir 3 3 3 7.4 5 0.5 49 49 1968000 4680000 0.8753 5.34569 0 0 5.8 2 3.7 2.6 Bacteria Chloroflexi 21119 Chloroflexus sp. Y-400-fl CP001364 NC_012032 Chromosome 0.4332 4159 5268950 1266.9 0.8147 cir 3 3 3 7.5 4.9 0.5 49 49 1963000 4699000 0.8754 5.34495 86 43 2 11 56 0 5.9 2 3.7 2.6 Bacteria Bacteroidetes/Chlorobi 29215 Chloroherpeton thalassium ATCC 35110 CP001100 NC_011026 Chromosome 0.5496 2710 3293456 1215.3 0.865997 cir 1 1 1 1.7 0.5 0.3 44 44 991000 2669000 1.9104 4.88905 40 27 2 0 29 0 5.3 2.5 4 3.2 Bacteria Betaproteobacteria 444 Chromobacterium violaceum ATCC 12472 AE016825 NC_005085 Chromosome 0.3517 4407 4751080 1078.1 0.884666 cir 9 8 8 4 2.7 1 98 98 3670 20.1 244000 2612000 0.6745 5.6455 73 36 1 2 39 0 13.3 6.1 7.9 6.9 Bacteria Gammaproteobacteria 12636 Chromohalobacter salexigens DSM 3043 CP000285 NC_007963 Chromosome 0.3609 3298 3696649 1120.9 0.89432 cir 5 5 5 2 1.5 0.6 69 69 2973 10.9 3673000 2128000 0.6254 5.62506 29 17 0 0 17 0 8.4 3.6 5.6 4.2 Bacteria Gammaproteobacteria 12716 Citrobacter koseri ATCC BAA-895 CP000822 NC_009792 Chromosome 0.4617 5003 4720462 943.5 0.90296 cir 8 7 7 3.4 1.7 0.3 81 83 76000 1492000 1.1566 5.23907 40 20 0 4 24 0 4.5 2 3.3 2.5 Bacteria Gammaproteobacteria 12716 Citrobacter koseri ATCC BAA-895 CP000823 NC_009793 Plasmid pCKO3 0.4482 15 9294 619.6 0.774263 cir 0 0 0 0 0 0 0 0 5000 1000 2.3671 5.21276 0 0 0 0 0 0 6.4 2.2 7.2 4.3 Bacteria Gammaproteobacteria 12716 Citrobacter koseri ATCC BAA-895 CP000824 NC_009794 Plasmid pCKO2 0.4872 13 5601 430.8 0.808606 cir 0 0 0 0 0 0.4 0 0 5000 3000 3.7315 5.02529 0 0 0 0 0 0 5 1.7 6 3.7 Bacteria Actinobacteria 19643 Clavibacter michiganensis subsp. michiganensis NCPPB 382 AM711867 NC_009480 Chromosome 0.2734 3008 3297891 1096.4 0.900875 cir 2 2 2 2 0.7 1.6 45 45 2586 16.3 1821000 2962000 0.6453 5.97677 25 9 1 12 22 0 22.8 11.3 14.8 13.9 Bacteria Actinobacteria 19643 Clavibacter michiganensis subsp. michiganensis NCPPB 382 AM711865 NC_009478 Plasmid pCM1 0.3244 28 27357 977 0.808459 cir 0 0 0 1.1 0 0.8 0 0 13 115.4 16000 25000 0.6214 5.75721 0 0 0 0 0 0 11.4 7.2 9.2 5.8 Bacteria Actinobacteria 19643 Clavibacter michiganensis subsp. michiganensis NCPPB 382 AM711866 NC_009479 Plasmid pCM2 0.335 72 69989 972.1 0.736359 cir 0 0 0 2.6 0.1 1 0 0 40 80 35000 68000 0.833 5.69367 0 0 0 0 0 0 10.8 4.7 8 7 Bacteria Actinobacteria 184 Clavibacter michiganensis subsp. sepedonicus AM849034 NC_010407 Chromosome 0.2744 3057 3258645 1066 0.907016 cir 2 2 2 4.8 4.4 1.6 45 45 1814000 2800000 0.6205 5.9725 22 10 1 10 21 0 22.2 10.6 14.2 13.4 Bacteria Actinobacteria 184 Clavibacter michiganensis subsp. sepedonicus AM849036 NC_010408 Plasmid pCSL1 0.3116 113 94791 838.9 0.837748 cir 0 0 0 2.5 10.3 1.1 0 0 0 59000 0.6815 5.78343 0 0 0 0 0 0 15.1 5.6 7.3 10.8 Bacteria Actinobacteria 184 Clavibacter michiganensis subsp. sepedonicus AM849035 NC_010399 Plasmid pCS1 0.3254 67 50350 751.5 0.818987 cir 0 0 0 7 4.3 0.8 0 0 45000 20000 0.5938 5.73816 0 0 0 0 0 0 10.6 5.8 9.4 6.2 Bacteria Firmicutes 77 Clostridium acetobutylicum ATCC 824 AE001437 NC_003030 Chromosome 0.6907 3672 3940880 1073.2 0.85681 cir 11 11 11 4.2 2.2 0.6 73 73 3030 21.2 0 1982000 3.3621 4.2168 41 22 1 6 29 0 11.4 5.8 7.9 9.5 Bacteria Firmicutes 77 Clostridium acetobutylicum ATCC 824 AE001438 NC_001988 Plasmid pSOL1 0.6909 176 192000 1090.9 0.837391 cir 0 0 0 4.7 0.5 0.6 0 0 131 34.4 0 94000 2.4969 4.24308 0 0 0 0 0 0 10.6 6.2 8.7 8.5 Bacteria Firmicutes 12637 Clostridium beijerinckii NCIMB 8052 CP000721 NC_009617 Chromosome 0.7014 5020 6000632 1195.3 0.793743 cir 15 14 14 7.5 5.2 0.6 94 94 4290 17 2000 2966000 2.9989 4.20659 88 63 0 1 64 0 12.8 7 9.4 10.7 Bacteria Firmicutes 19517 Clostridium botulinum A str. ATCC 19397 CP000726 NC_009697 Chromosome 0.7179 3552 3863450 1087.7 0.810871 cir 8 8 8 5.3 3.1 1 71 81 3863000 1839000 3.8345 4.10432 42 26 0 1 27 0 17.9 9.6 12.2 15.5 Bacteria Firmicutes 193 Clostridium botulinum A str. ATCC 3502 AM412318 NC_009496 Plasmid pBOT3502 0.732 19 16344 860.2 0.816569 cir 0 0 0 0 0 0.5 0 0 8 137.5 5000 16000 3.0409 4.10925 0 0 0 0 0 0 19.4 9.9 14.9 15.1 Bacteria Firmicutes 193 Clostridium botulinum A str. ATCC 3502 AM412317 NC_009495 Chromosome 0.7176 3652 3886916 1064.3 0.820254 cir 9 9 9 5.1 3.2 1 80 80 2901 25.9 0 1910000 3.8459 4.1053 42 26 0 1 27 0 17.9 9.6 12.1 15.5 Bacteria Firmicutes 19521 Clostridium botulinum A str. Hall CP000727 NC_009698 Chromosome 0.7182 3404 3760560 1104.7 0.805116 cir 8 8 8 5.1 3.1 1 81 81 0 1841000 3.834 4.10385 42 25 0 1 26 0 18 9.7 12.3 15.6 Bacteria Firmicutes 28507 Clostridium botulinum A3 str. Loch Maree CP000962 NC_010520 Chromosome 0.7169 3655 3992906 1092.5 0.811076 cir 9 9 9 5.3 3.1 0.9 81 81 0 1972000 3.7803 4.11101 45 30 0 2 32 0 17.5 9.4 12.1 15.1 Bacteria Firmicutes 28507 Clostridium botulinum A3 str. Loch Maree CP000963 NC_010418 Plasmid pCLK 0.7436 329 266785 810.9 0.811552 cir 0 0 0 6.3 0.4 1 0 0 48000 134000 3.4518 4.07116 0 0 0 0 0 0 21.1 11.1 14.9 18.5 Bacteria Firmicutes 28857 Clostridium botulinum B str. Eklund 17B CP001056 NC_010674 Chromosome 0.7249 3473 3800327 1094.2 0.823259 cir 12 11 11 4.3 3.4 0.9 77 77 3800000 1893000 3.136 4.12778 35 32 0 0 32 0 17.3 9.5 12.4 14.9 Bacteria Firmicutes 28857 Clostridium botulinum B str. Eklund 17B CP001057 NC_010680 Plasmid pCLL 0.7505 54 47642 882.3 0.864804 cir 0 0 0 3.4 0.3 1.5 0 0 33000 17000 3.0897 4.04992 0 0 0 0 0 0 21.9 11 13.1 21.5 Bacteria Firmicutes 28505 Clostridium botulinum B1 str. Okra CP000939 NC_010516 Chromosome 0.7166 3657 3958233 1082.4 0.809912 cir 9 9 9 5.3 3.3 1 82 82 3958000 1910000 3.7973 4.11045 47 29 0 1 30 0 17.6 9.6 12.1 15.3 Bacteria Firmicutes 28505 Clostridium botulinum B1 str. Okra CP000940 NC_010379 Plasmid pCLD 0.7464 195 148780 763 0.797997 cir 0 0 0 6 0 0.8 0 0 105000 2000 3.5321 4.06052 0 0 0 0 0 0 20.3 11.3 15.1 18 Bacteria Firmicutes 28855 Clostridium botulinum E3 str. Alaska E43 CP001078 NC_010723 Chromosome 0.7264 3256 3659644 1124 0.823401 cir 12 11 11 4 2.7 1 79 79 0 1846000 3.0723 4.12278 29 27 0 0 27 0 17.8 10 12.7 15.4 Bacteria Firmicutes 19519 Clostridium botulinum F str. Langeland CP000728 NC_009699 Chromosome 0.7169 3635 3995387 1099.1 0.806383 cir 9 9 9 5.5 3.2 0.9 118 81 2000 1916000 3.8081 4.10857 47 29 0 1 30 0 17.7 9.5 12 15.4 Bacteria Firmicutes 19519 Clostridium botulinum F str. Langeland CP000729 NC_009700 Plasmid pCLI 0.7391 24 17531 730.5 0.738634 cir 0 0 0 1.5 0 1 0 0 16000 10000 3.1487 4.02509 0 0 0 0 0 0 20.4 12.1 17.2 18.9 Bacteria Firmicutes 17419 Clostridium cellulolyticum H10 CP001348 NC_011898 Chromosome 0.626 3390 4068724 1200.2 0.864942 cir 8 8 8 7.1 4.6 0.3 63 63 0 1918000 2.4333 4.48974 38 15 0 1 16 0 5.5 3.2 4.6 4.6 Bacteria Firmicutes 78 Clostridium difficile 630 AM180355 NC_009089 Chromosome 0.7094 3776 4290252 1136.2 0.829364 cir 10 11 11 6.4 5 0.8 87 87 3200 18 0 2230000 3.1157 4.16419 53 36 1 1 38 0 15.9 7.9 10.1 13.2 Bacteria Firmicutes 78 Clostridium difficile 630 AM180356 NC_008226 Plasmid pCD630 0.721 11 7881 716.5 0.790509 cir 0 0 0 0 0 0.4 0 0 2 450 6000 2000 3.8447 4.11029 0 0 0 0 0 0 17.1 6 9.4 15.3 Bacteria Firmicutes 19065 Clostridium kluyveri DSM 555 CP000674 NC_009466 Plasmid pCKL555A 0.6663 75 59182 789.1 0.883884 cir 0 0 0 0 0 0.6 0 0 18000 53000 3.1682 4.31677 0 0 0 0 0 0 8.8 4.7 6.4 7.2 Bacteria Firmicutes 19065 Clostridium kluyveri DSM 555 CP000673 NC_009706 Chromosome 0.6798 3838 3964618 1033 0.842932 cir 6 7 7 7.6 3.4 0.6 61 61 0 1667000 3.4364 4.26994 40 33 0 0 33 0 11.4 6.2 8.2 9.6 Bacteria Firmicutes 33271 Clostridium kluyveri NBRC 12016 AP009050 NC_011836 Plasmid pCKL1 0.6663 55 59182 1076 0.81834 cir 0 0 0 0 0 0.6 0 0 28000 53000 3.1682 4.31679 0 0 0 0 0 0 8.8 4.7 6.4 7.2 Bacteria Firmicutes 33271 Clostridium kluyveri NBRC 12016 AP009049 NC_011837 Chromosome 0.6801 3468 3896121 1123.4 0.832732 cir 6 7 7 5.3 3.4 0.6 61 61 3896000 1666000 3.4383 4.26918 40 32 0 0 32 0 11.4 6.3 8.2 9.7 Bacteria Firmicutes 16820 Clostridium novyi NT CP000382 NC_008593 Chromosome 0.7114 2325 2547720 1095.8 0.868685 cir 10 10 10 5.2 4.2 0.9 81 81 2030 14.5 0 1312000 3.7008 4.1467 20 15 0 1 16 0 15.9 7.6 10 13.7 Bacteria Firmicutes 304 Clostridium perfringens ATCC 13124 CP000246 NC_008261 Chromosome 0.7162 2876 3256683 1132.4 0.830518 cir 8 8 8 3.3 2.1 0.9 93 93 2393 20.2 0 1543000 4.2341 4.07367 24 19 1 0 20 0 16.9 9.3 12.1 14.2 Bacteria Firmicutes 12521 Clostridium perfringens SM101 CP000312 NC_008262 Chromosome 0.7175 2558 2897393 1132.7 0.813285 cir 10 10 10 7 5.8 0.9 94 94 2164 18.2 0 1340000 4.1602 4.07488 19 15 0 0 15 0 17.3 9.7 12.6 14.5 Bacteria Firmicutes 12521 Clostridium perfringens SM101 CP000313 NC_008263 Plasmid 1 0.7332 10 12397 1239.7 0.597725 cir 0 0 0 1.9 0 1.1 0 0 7 42.9 4000 9000 3.5734 4.04587 0 0 0 0 0 0 23.9 12.2 19.9 17.7 Bacteria Firmicutes 12521 Clostridium perfringens SM101 CP000314 NC_008264 Plasmid 2 0.7418 10 12206 1220.6 0.696788 cir 0 0 0 1.2 0 2.4 0 0 11 -9.1 4000 0 4.8009 4.01609 0 0 0 0 0 0 26.9 17.7 21.5 20.2 Bacteria Firmicutes 79 Clostridium perfringens str. 13 BA000016 NC_003366 Chromosome 0.7143 2660 3031430 1139.6 0.833751 cir 10 10 9 3.5 2.8 0.9 96 96 2286 16.4 0 1361000 4.2261 4.07959 21 17 1 0 18 0 16.7 9.2 12 14.1 Bacteria Firmicutes 79 Clostridium perfringens str. 13 AP003515 NC_003042 Plasmid pCP13 0.745 63 54310 862.1 0.845774 cir 0 0 0 4.7 0 1.2 0 0 41 53.7 52000 24000 4.5259 3.99501 0 0 0 0 0 0 21.9 11.9 14.9 19.2 Bacteria Firmicutes 16184 Clostridium phytofermentans ISDg CP000885 NC_010001 Chromosome 0.6465 3902 4847594 1242.3 0.817847 cir 8 8 8 3.8 1.7 0.5 61 61 0 2682000 3.0739 4.42458 60 27 0 4 31 0 7.6 3.6 5.5 5.3 Bacteria Firmicutes 81 Clostridium tetani E88 AE015927 NC_004557 Chromosome 0.7125 2373 2799251 1179.6 0.854762 cir 6 6 6 4 3.1 1 54 54 2147 10.5 52000 1396000 4.2148 4.11301 29 20 1 0 21 0 16.1 7.5 10 13.9 Bacteria Firmicutes 81 Clostridium tetani E88 AF528097 NC_004565 Plasmid pE88 0.7547 59 74082 1255.6 0.650995 cir 0 0 0 13.1 0.2 1.3 0 0 43 37.2 11000 37000 2.72 4.03443 1 0 0 0 0 0 21.8 14.1 17.3 18.1 Bacteria Firmicutes 314 Clostridium thermocellum ATCC 27405 CP000568 NC_009012 Chromosome 0.6101 3191 3843301 1204.4 0.836394 cir 4 4 4 8.1 7.4 0.5 56 56 2693 18.5 2834000 891000 3.3629 4.57071 37 20 0 1 21 0 7.4 3.1 4.8 5 Bacteria Gammaproteobacteria 275 Colwellia psychrerythraea 34H CP000083 NC_003910 Chromosome 0.6199 4910 5373180 1094.3 0.844738 cir 10 9 9 4.6 3.3 0.4 88 88 3801 29.2 5373000 2734000 1.063 4.56058 71 36 0 2 38 0 5 2.9 4.6 3.7 Bacteria Firmicutes 30729 Coprothermobacter proteolyticus DSM 5265 CP001145 NC_011295 Chromosome 0.5523 1482 1424912 961.5 0.921209 cir 2 2 2 2.1 0.1 0.2 47 47 0 777000 2.6079 4.71181 6 3 0 0 3 0 3.2 1.7 2.5 2.4 Bacteria Actinobacteria 87 Corynebacterium diphtheriae NCTC 13129 BX248353 NC_002935 Chromosome 0.4652 2320 2488635 1072.7 0.895729 cir 5 5 5 2.8 2.4 0.3 54 54 1882 23.3 2472000 1239000 0.9679 5.17284 11 6 0 4 10 0 4.4 1.7 3.1 2.6 Bacteria Actinobacteria 305 Corynebacterium efficiens YS-314 BA000035 NC_004369 Chromosome 0.3686 2942 3147090 1069.7 0.903894 cir 5 5 5 4.8 4.4 0.8 56 56 2482 18.5 3045000 1654000 1.0597 5.53782 13 6 0 3 9 0 8.5 3.1 5.6 3.8 Bacteria Actinobacteria 307 Corynebacterium glutamicum ATCC 13032 BA000036 NC_003450 Chromosome 0.4619 3099 3309401 1067.9 0.868304 cir 6 6 6 3.3 2.7 0.4 60 60 2536 22.2 4000 1563000 1.032 5.16908 13 7 0 3 10 0 4.7 1.6 3.3 2.4 Bacteria Actinobacteria 13760 Corynebacterium glutamicum ATCC 13032 BX927147 NC_006958 Chromosome 0.4616 3058 3282708 1073.5 0.873595 cir 6 6 6 3.1 2.8 0.4 60 60 2491 22.8 3266000 1536000 1.0293 5.17055 13 7 0 3 10 0 4.7 1.6 3.3 2.4 Bacteria Actinobacteria 19193 Corynebacterium glutamicum R AP009044 NC_009342 Chromosome 0.4587 3052 3314179 1085.9 0.862808 cir 6 6 6 2.3 1.7 0.4 0 58 2503 21.9 3297000 1679000 1.0739 5.17954 14 8 0 3 11 0 4.7 1.7 3.3 2.4 Bacteria Actinobacteria 19193 Corynebacterium glutamicum R AP009045 NC_009343 Plasmid pCGR1 0.4607 28 49120 1754.3 0.368913 cir 0 0 0 0 0 0.6 0 0 12 133.3 44000 19000 0.9161 5.20907 0 0 0 0 0 0 5.5 1.4 1.8 3.8 Bacteria Actinobacteria 13967 Corynebacterium jeikeium K411 AF401314 NC_003080 Plasmid pKW4 0.4623 16 14323 895.2 0.712979 cir 0 0 0 5.5 2.2 0.4 0 0 12 33.3 4000 10000 1.913 5.12851 0 0 0 0 0 0 4.5 2.1 3.9 2.3 Bacteria Actinobacteria 13967 Corynebacterium jeikeium K411 CR931997 NC_007164 Chromosome 0.386 2104 2462499 1170.4 0.893168 cir 3 3 3 6 5.2 0.7 50 50 1907 10.3 0 1084000 1.042 5.44535 9 6 0 3 9 0 7.7 2.8 3.6 3.8 Bacteria Actinobacteria 29211 Corynebacterium urealyticum DSM 7109 AM942444 NC_010545 Chromosome 0.3581 2024 2369219 1170.6 0.894266 cir 3 3 3 4.1 3.3 0.7 51 51 1000 1268000 1.1012 5.54569 9 5 0 2 7 0 9.1 3.6 5.2 4.8 Bacteria Gammaproteobacteria 19137 Coxiella burnetii CbuG_Q212 CP001019 NC_011527 Chromosome 0.5737 1871 2008870 1073.7 0.773643 cir 1 1 1 4.4 3.9 0.3 42 42 291000 1053000 2.4619 4.76116 12 7 0 0 7 0 4.4 2.6 3.8 3.4 Bacteria Gammaproteobacteria 19139 Coxiella burnetii CbuK_Q154 CP001020 NC_011528 Chromosome 0.5733 1905 2063100 1083 0.775167 cir 1 1 1 5.5 5.2 0.3 42 42 204000 862000 2.5095 4.7622 12 7 0 0 7 0 4.4 2.7 3.8 3.4 Bacteria Gammaproteobacteria 19139 Coxiella burnetii CbuK_Q154 CP001021 NC_011526 Plasmid pQpRS_K_Q154 0.6034 42 39280 935.2 0.670137 cir 0 0 0 3.2 0 0.4 0 0 35000 16000 3.0066 4.61685 0 0 0 0 0 0 5.4 3 3.9 4.9 Bacteria Gammaproteobacteria 16721 Coxiella burnetii Dugway 5J108-111 CP000733 NC_009727 Chromosome 0.5756 2058 2158758 1049 0.84101 cir 1 1 1 4.2 3.3 0.3 42 42 195000 1150000 2.5251 4.74931 13 7 0 0 7 0 4.4 2.6 3.8 3.5 Bacteria Gammaproteobacteria 16721 Coxiella burnetii Dugway 5J108-111 CP000735 NC_009726 Plasmid pQpDG 0.6021 67 54179 808.6 0.79265 cir 0 0 0 3.4 0.7 0.3 0 0 50000 31000 2.7225 4.62904 0 0 0 0 0 0 4.7 2.8 3.4 4.6 Bacteria Gammaproteobacteria 16791 Coxiella burnetii RSA 331 CP000889 NC_010115 Plasmid QpH1 0.6067 45 37317 829.3 0.658386 cir 0 0 0 1.1 0 0.4 0 0 22000 9000 3.5239 4.58611 0 0 0 0 0 0 5.3 3 3.3 5.5 Bacteria Gammaproteobacteria 16791 Coxiella burnetii RSA 331 CP000890 NC_010117 Chromosome 0.5724 1930 2016427 1044.8 0.780924 cir 1 1 1 5.5 5 0.3 41 42 1929000 919000 2.4874 4.76707 12 7 0 0 7 0 4.3 2.6 3.8 3.4 Bacteria Gammaproteobacteria 41 Coxiella burnetii RSA 493 AE016828 NC_002971 Chromosome 0.5734 2016 1995281 989.7 0.846055 cir 1 1 1 3.7 3.3 0.3 42 42 1554 29.7 36000 861000 2.4919 4.76055 12 7 0 0 7 0 4.3 2.6 3.8 3.4 Bacteria Gammaproteobacteria 41 Coxiella burnetii RSA 493 AE016829 NC_004704 Plasmid pQpH1 0.6069 36 37393 1038.7 0.590271 cir 0 0 0 1.5 0 0.4 0 0 21 71.4 33000 20000 3.5434 4.58587 0 0 0 0 0 0 5.4 2.9 3.1 5.5 Bacteria Gammaproteobacteria 12720 Cronobacter sakazakii ATCC BAA-894 CP000783 NC_009778 Chromosome 0.4323 4277 4368373 1021.4 0.876892 cir 8 7 7 3.5 1.6 0.4 80 82 4081000 1766000 0.948 5.35177 32 19 0 1 20 0 6.2 2.7 4 3.3 Bacteria Gammaproteobacteria 12720 Cronobacter sakazakii ATCC BAA-894 CP000784 NC_009779 Plasmid pESA2 0.4842 38 31208 821.3 0.839528 cir 0 0 0 0 0 0.3 0 0 20000 4000 1.7303 5.09319 0 0 0 0 0 0 4.4 2.6 6.1 2.4 Bacteria Gammaproteobacteria 12720 Cronobacter sakazakii ATCC BAA-894 CP000785 NC_009780 Plasmid pESA3 0.4315 127 131196 1033 0.875621 cir 0 0 0 0.3 0 0.5 0 0 119000 75000 1.0671 5.36342 1 1 0 0 1 0 5.3 2.3 3.6 2.7 Bacteria Betaproteobacteria 15733 Cupriavidus taiwanensis CU633749 NC_010528 Chromosome 1 0.3249 533 3416911 6410.7 0.147291 cir 3 3 3 2 1.3 1.1 3 57 3342000 1640000 0.5077 5.80023 9 3 0 1 4 0 14 7.5 9.3 8.3 Bacteria Betaproteobacteria 15733 Cupriavidus taiwanensis CU633750 NC_010530 Chromosome 2 0.3209 502 2502411 4984.9 0.196747 cir 2 2 2 3.3 1.5 1 2 6 0 1282000 0.4698 5.82572 7 2 0 0 2 0 13.8 7.6 9.6 8.5 Bacteria Betaproteobacteria 15733 Cupriavidus taiwanensis CU633751 NC_010529 Plasmid pRALTA 0.4032 576 557200 967.4 0.825791 cir 0 0 0 22.4 24.6 0.3 0 0 437000 105000 0.8369 5.42958 1 0 0 1 1 0 4.5 2.7 4 3.2 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 CP000806 NC_010546 Chromosome circular 0.6212 4762 4934271 1036.2 0.866651 cir 2 2 2 3.9 2.4 0.5 43 42 1253000 4422000 2.6448 4.47753 68 40 1 0 41 0 6.2 3.5 3.9 4.8 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 CP000808 NC_010539 Plasmid A 0.632 38 39620 1042.6 0.898637 cir 0 0 0 0 0 0.2 0 0 4000 16000 3.3089 4.41933 0 0 0 0 0 0 4.7 3.5 3.5 4.6 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 CP000807 NC_010547 Chromosome linear 0.6143 449 429701 957 0.857629 lin 0 0 0 6.2 0.8 0.4 0 0 2.8936 4.48606 0 0 0 0 0 0 6 3.4 3.9 4.2 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 CP000809 NC_010541 Plasmid B 0.5854 25 31856 1274.2 0.890884 cir 0 0 0 21.8 0 0.4 0 0 21000 0 1.9525 4.60166 0 0 0 0 0 0 7.7 3.6 5.1 3.5 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 CP000810 NC_010542 Plasmid C 0.6191 19 14685 772.9 0.71556 cir 0 0 0 0 0 1.1 0 0 1000 6000 3.0439 4.43445 0 0 0 0 0 0 8.5 4 5.4 5 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 CP000811 NC_010543 Plasmid D 0.6303 11 10244 931.3 0.78729 cir 0 0 0 0 0 1.5 0 0 4000 1000 2.5771 4.38786 0 0 0 0 0 0 8.2 5.4 5.4 7.2 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001291 NC_011729 Chromosome 0.6139 5227 5942652 1136.9 0.817519 cir 3 3 3 6.4 5.7 0.9 44 44 3969000 2185000 2.7125 4.48978 99 58 2 0 60 0 7.3 3.5 4.3 4.8 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001292 NC_011738 Plasmid pP742401 0.6291 236 328635 1392.5 0.778265 cir 0 0 0 10.6 10.9 0.5 0 0 173000 74000 2.9781 4.42749 1 0 0 0 0 0 6.4 4.3 5 5 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001293 NC_011737 Plasmid pP742402 0.6263 175 197705 1129.7 0.743871 cir 0 0 0 4.3 4.6 0.3 0 0 141000 80000 3.0768 4.44518 0 0 0 0 0 0 7.2 4.3 5 5.1 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001294 NC_011730 Plasmid pP742403 0.5933 26 29239 1124.6 0.781456 cir 0 0 0 1 0 0.3 0 0 9000 18000 3.379 4.5458 0 0 0 0 0 0 9.5 3.8 3.7 4.2 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001295 NC_011732 Plasmid pP742404 0.6063 19 22636 1191.4 0.712493 cir 0 0 0 0 0 0.6 0 0 5000 13000 2.2221 4.50509 0 0 0 0 0 0 7 3.5 3.7 4.4 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001296 NC_011733 Plasmid pP742405 0.6183 16 18083 1130.2 0.580988 cir 0 0 0 0.6 0 0.1 0 0 5000 11000 2.8701 4.43965 0 0 0 0 0 0 6.6 3.6 5.8 5.5 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 CP001297 NC_011734 Plasmid pP742406 0.598 11 15219 1383.5 0.763914 cir 0 0 0 1.3 0 0.7 0 0 10000 0 3.2262 4.47239 0 0 0 0 0 0 6.8 2.1 3.5 3.9 Bacteria Cyanobacteria 28337 Cyanothece sp. PCC 7425 CP001344 NC_011884 Chromosome 0.4921 4966 5374574 1082.3 0.856667 cir 2 2 2 4 3.4 0.3 47 47 2000 2797000 1.7614 4.95609 100 63 18 3 84 0 4.3 1.4 1.5 2 Bacteria Cyanobacteria 28337 Cyanothece sp. PCC 7425 CP001345 NC_011880 Plasmid pP742501 0.5114 160 196837 1230.2 0.789364 cir 0 0 0 4.3 1.1 0.2 0 0 108000 48000 1.7583 4.87471 1 0 2 0 2 0 6 1.5 2.3 1.9 Bacteria Cyanobacteria 28337 Cyanothece sp. PCC 7425 CP001346 NC_011885 Plasmid pP742502 0.5091 172 179973 1046.4 0.74035 cir 0 0 0 10.7 18.7 0.1 0 0 42000 160000 1.2696 4.90171 4 3 0 0 3 0 3.5 1.7 1.9 2.4 Bacteria Cyanobacteria 28337 Cyanothece sp. PCC 7425 CP001347 NC_011882 Plasmid pP742503 0.5287 29 34726 1197.4 0.884726 cir 0 0 0 0 0 0.1 0 0 14000 3000 1.748 4.79754 0 0 0 0 0 0 3.8 2 3.2 1.9 Bacteria Cyanobacteria 20503 Cyanothece sp. PCC 8801 CP001287 NC_011726 Chromosome 0.6024 4260 4679413 1098.5 0.848223 cir 2 2 2 4 3 0.6 43 43 3303000 784000 2.2303 4.54607 70 38 1 0 39 0 5.8 3 3.7 4 Bacteria Cyanobacteria 20503 Cyanothece sp. PCC 8801 CP001288 NC_011721 Plasmid pP880101 0.6115 52 50894 978.7 0.714662 cir 0 0 0 12.4 12 0.3 0 0 10000 42000 3.6998 4.48177 0 0 0 0 0 0 5.8 4.2 4.1 4.7 Bacteria Cyanobacteria 20503 Cyanothece sp. PCC 8801 CP001289 NC_011723 Plasmid pP880102 0.5977 44 40786 927 0.737974 cir 0 0 0 9.5 12.4 0.4 0 0 30000 16000 3.1114 4.52801 0 0 0 0 0 0 6.3 2.4 4.4 4.6 Bacteria Cyanobacteria 20503 Cyanothece sp. PCC 8801 CP001290 NC_011727 Plasmid pP880103 0.5956 11 16601 1509.2 0.882417 cir 0 0 0 2.1 0 0.3 0 0 5000 0 3.1504 4.53318 0 0 0 0 0 0 10.7 3.3 4.6 6.4 Bacteria Bacteroidetes/Chlorobi 54 Cytophaga hutchinsonii ATCC 33406 CP000383 NC_008255 Chromosome 0.6115 3785 4433218 1171.3 0.898564 cir 3 3 3 3 1.5 0.4 39 39 3087 22.6 4042000 1943000 1.8803 4.64716 30 32 0 3 35 0 5.8 3 5.1 3.8 Bacteria Betaproteobacteria 9635 Dechloromonas aromatica RCB CP000089 NC_007298 Chromosome 0.4075 4171 4501104 1079.1 0.915239 cir 4 4 4 4.7 1.6 0.4 64 64 3613 15.4 4501000 2194000 0.8147 5.41431 139 84 0 4 88 0 5.7 2.4 3.7 3.1 Bacteria Chloroflexi 214 Dehalococcoides ethenogenes 195 CP000027 NC_002936 Chromosome 0.5115 1580 1469720 930.2 0.896497 cir 1 1 1 9.5 0.6 0.3 46 46 1216 29.9 2000 793000 1.4137 4.89132 25 14 0 3 17 0 4.1 1.8 2.7 2.2 Bacteria Chloroflexi 15770 Dehalococcoides sp. BAV1 CP000688 NC_009455 Chromosome 0.5283 1371 1341892 978.8 0.895713 cir 1 1 1 1.2 1.5 0.3 46 46 1148 19.4 281000 804000 1.4837 4.83222 19 10 0 4 14 0 3.8 1.8 2.6 2.3 Bacteria Chloroflexi 15604 Dehalococcoides sp. CBDB1 AJ965256 NC_007356 Chromosome 0.5297 1458 1395502 957.1 0.89887 cir 1 1 1 1.5 0.8 0.3 47 47 1163 25.4 1000 725000 1.4851 4.82793 31 21 0 3 24 0 3.7 1.8 2.6 2.3 Bacteria Deinococcus-Thermus 13423 Deinococcus geothermalis DSM 11300 CP000358 NC_008010 Plasmid 1 0.343 522 574127 1099.9 0.891129 cir 1 1 1 5.8 5.3 0.6 0 0 452 15.5 557000 261000 1.2468 5.58389 6 6 0 1 7 0 8.3 4.3 5.2 4.8 Bacteria Deinococcus-Thermus 13423 Deinococcus geothermalis DSM 11300 CP000359 NC_008025 Chromosome 0.3336 2335 2467205 1056.6 0.902572 cir 3 3 3 1.8 1.7 0.8 48 48 2013 16 6000 1153000 1.2192 5.63169 25 13 0 4 17 0 8.9 4.7 5.1 5.6 Bacteria Deinococcus-Thermus 13423 Deinococcus geothermalis DSM 11300 CP000856 NC_009939 Plasmid pDGEO02 0.3335 205 205686 1003.3 0.867011 lin 0 0 0 6 6.8 0.6 0 0 1.356 5.62866 1 1 0 0 1 0 10 5.9 6.7 7 Bacteria Deinococcus-Thermus 65 Deinococcus radiodurans R1 AE000513 NC_001263 Chromosome 1 0.3299 2579 2648638 1027 0.879014 cir 3 3 3 3.2 3.2 0.8 48 48 2112 22.1 2479000 1350000 1.0571 5.67232 15 9 0 3 12 0 11.9 5.7 5.9 7 Bacteria Deinococcus-Thermus 65 Deinococcus radiodurans R1 AE001825 NC_001264 Chromosome 2 0.3331 357 412348 1155 0.889504 cir 0 0 0 1.2 0.3 0.8 1 1 297 20.2 171000 301000 1.0598 5.65959 6 1 0 1 2 0 11 6 5.8 6.5 Bacteria Deinococcus-Thermus 65 Deinococcus radiodurans R1 AE001826 NC_000958 Plasmid MP1 0.3681 131 177466 1354.7 0.798384 cir 0 0 0 9.4 8.7 0.3 0 0 109 20.2 156000 60000 1.127 5.4965 4 3 0 0 3 0 7.5 4.1 5.2 4.7 Bacteria Deinococcus-Thermus 65 Deinococcus radiodurans R1 AE001827 NC_000959 Plasmid CP1 0.4379 35 45704 1305.8 0.655282 cir 0 0 0 6.4 8.3 0.5 0 0 28 25 18000 4000 1.5535 5.16436 0 0 0 0 0 0 2 2.4 3.9 1.9 Bacteria Betaproteobacteria 17413 Delftia acidovorans SPH-1 CP000884 NC_010002 Chromosome 0.3352 6040 6767514 1120.4 0.897371 cir 5 5 5 5.5 3.3 1 80 80 40000 4193000 0.6263 5.69824 87 56 0 4 60 0 13 4.7 8.2 5.6 Bacteria Deltaproteobacteria 19449 Desulfatibacillum alkenivorans AK-01 CP001322 NC_011768 Chromosome 0.4552 5252 6517073 1240.9 0.8701 cir 2 2 2 4.3 3.5 0.4 56 56 5094000 1121000 2.2516 5.16363 166 107 0 2 109 0 5.4 2.1 3.3 2.7 Bacteria Firmicutes 205 Desulfitobacterium hafniense DCB-2 CP001336 NC_011830 Chromosome 0.5246 4883 5279134 1081.1 0.86151 cir 5 5 5 4.2 2.9 0.3 74 74 1000 2919000 3.0529 4.83142 65 40 0 4 44 0 4 1.7 3.4 2.3 Bacteria Firmicutes 16639 Desulfitobacterium hafniense Y51 AP008230 NC_007907 Chromosome 0.5264 5060 5727534 1131.9 0.846888 cir 6 6 6 5.6 3.3 0.3 59 59 4388 15.3 79000 1858000 3.0425 4.82668 71 43 0 5 48 0 4 1.7 3.4 2.3 Bacteria Deltaproteobacteria 18007 Desulfococcus oleovorans Hxd3 CP000859 NC_009943 Chromosome 0.4383 3265 3944167 1208 0.881385 cir 1 1 1 4.1 2.5 0.6 47 47 39000 2063000 2.2929 5.26122 75 32 0 1 33 0 6.5 2.8 4.2 3.3 Bacteria Deltaproteobacteria 12751 Desulfotalea psychrophila LSv54 CR522870 NC_006138 Chromosome 0.5319 3118 3523383 1130 0.853108 cir 8 7 7 6.1 2.1 0.4 65 64 2519 23.8 710000 2476000 3.4615 4.78815 42 23 0 1 24 0 4.2 1.7 2.9 2.7 Bacteria Deltaproteobacteria 12751 Desulfotalea psychrophila LSv54 CR522871 NC_006139 Plasmid large 0.5639 101 121587 1203.8 0.778052 cir 0 0 0 9.6 0.5 0.3 0 0 79 27.8 44000 4000 2.6919 4.72583 0 0 0 0 0 0 6.1 3.2 3.4 4.5 Bacteria Deltaproteobacteria 12751 Desulfotalea psychrophila LSv54 CR522872 NC_006140 Plasmid small 0.7144 17 14664 862.6 0.726268 cir 0 0 0 0 0 0.7 0 0 7 142.9 8000 14000 6.5125 4.12984 0 0 0 0 0 0 18.3 10.8 14.4 18.9 Bacteria Firmicutes 13424 Desulfotomaculum reducens MI-1 CP000612 NC_009253 Chromosome 0.5772 3276 3608104 1101.4 0.832202 cir 10 8 8 7.1 5.5 0.3 71 70 2790 17.4 0 2030000 2.5677 4.64717 33 22 1 1 24 0 4.4 2.5 4.1 3.3 Bacteria Deltaproteobacteria 29493 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 CP001358 NC_011883 Chromosome 0.4193 2356 2873437 1219.6 0.835344 cir 3 3 3 1.8 1.6 0.4 52 52 17000 1443000 1.3157 5.34463 25 14 0 0 14 0 5.4 2.4 4.3 2.9 Bacteria Deltaproteobacteria 329 Desulfovibrio desulfuricans subsp. desulfuricans str. G20 CP000112 NC_007519 Chromosome 0.4216 3775 3730232 988.1 0.90402 cir 4 4 4 3.2 6 0.4 66 66 2821 33.8 8000 1984000 1.2014 5.36861 72 38 0 1 39 0 5.7 2.2 3.9 2.9 Bacteria Deltaproteobacteria 17227 Desulfovibrio vulgaris DP4 CP000528 NC_008741 Plasmid pDVUL01 0.3431 150 198504 1323.4 0.877408 cir 0 0 0 0.1 0 1.3 0 0 125 20 198000 64000 0.8438 5.68911 4 1 0 1 2 0 13.6 4.3 5.6 6.1 Bacteria Deltaproteobacteria 17227 Desulfovibrio vulgaris DP4 CP000527 NC_008751 Chromosome 0.3699 2941 3462887 1177.5 0.856902 cir 6 5 5 3.4 1.8 0.5 68 68 2592 13.5 7000 1765000 1.1557 5.56095 79 45 1 0 46 0 7.3 3.2 4.3 4 Bacteria Deltaproteobacteria 27731 Desulfovibrio vulgaris str. Miyazaki F CP001197 NC_011769 Chromosome 0.3289 3180 4040304 1270.5 0.824572 cir 4 4 4 2.7 2.1 1.2 64 64 2632000 509000 0.9302 5.75321 94 60 1 1 62 0 14 6 7 7.2 Bacteria Deltaproteobacteria 51 Desulfovibrio vulgaris str. Hildenborough AE017285 NC_002937 Chromosome 0.3686 3379 3570858 1056.8 0.858589 cir 6 5 5 2.2 3.5 0.5 68 68 2565 31.7 9000 1747000 1.1556 5.56586 78 42 1 0 43 0 7.3 3.2 4.4 4.1 Bacteria Deltaproteobacteria 51 Desulfovibrio vulgaris str. Hildenborough AE017286 NC_005863 Megaplasmid 0.3432 152 202301 1330.9 0.849981 cir 0 0 0 0.3 0 1.4 0 0 124 22.6 6000 87000 0.8191 5.68757 3 1 0 1 2 0 13.6 4.4 5.3 6.2 Archaea Crenarchaeota 28141 Desulfurococcus kamchatkensis 1221n CP001140 NC_011766 Chromosome 0.5466 1471 1365223 928.1 0.880691 cir 0 1 1 2.3 2.3 0.3 47 48 140000 1034000 2.4101 4.68574 0 0 0 0 0 0 4.2 1.5 2.4 2.6 Bacteria Betaproteobacteria 29975 Diaphorobacter sp. TPSY CP001392 NC_011992 Chromosome 0.3317 3479 3796573 1091.3 0.894083 cir 3 3 3 2.3 2.9 0.9 53 53 2000 1992000 0.5568 5.74364 40 23 0 3 26 0 12.1 5.7 7.7 6.4 Bacteria Gammaproteobacteria 50 Dichelobacter nodosus VCS1703A CP000513 NC_009446 Chromosome 0.556 1280 1389350 1085.4 0.901943 cir 3 3 3 4 0.8 0.5 45 45 1152 11.1 1353000 765000 1.2502 4.98751 10 4 0 0 4 0 6.6 2.7 3.9 4.2 Bacteria Other Bacteria 30731 Dictyoglomus thermophilum H-6-12 CP001146 NC_011297 Chromosome 0.6626 1912 1959987 1025.1 0.929961 cir 2 2 2 2 1.5 0.6 46 46 0 1048000 6.4442 4.19324 6 3 1 0 4 0 9.1 4.7 5.5 7.8 Bacteria Other Bacteria 29175 Dictyoglomus turgidum DSM 6724 CP001251 NC_011661 Chromosome 0.6604 1744 1855560 1064 0.924458 cir 2 2 2 1.3 1 0.5 46 47 276000 1215000 6.8886 4.1987 9 5 1 0 6 0 9 4.7 5.5 7.5 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 CP000830 NC_009952 Chromosome 0.3398 3577 3789584 1059.4 0.899651 cir 2 2 2 1.5 1.1 0.7 44 44 3734000 1648000 0.6306 5.68225 32 23 0 1 24 0 10.2 4.4 5.4 5.8 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 CP000831 NC_009955 Plasmid pDSHI01 0.3987 195 190506 977 0.873175 cir 0 0 0 4.4 0.1 0.3 0 0 53000 118000 0.8546 5.46195 1 1 0 0 1 0 4.4 2.2 3.8 2.5 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 CP000832 NC_009956 Plasmid pDSHI02 0.3485 137 152970 1116.6 0.903262 cir 0 0 0 0.2 0 0.6 0 0 70000 151000 0.5014 5.64968 1 0 1 0 1 0 10.4 4.1 5.4 5.3 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 CP000833 NC_009957 Plasmid pDSHI03 0.3947 135 126304 935.6 0.892719 cir 0 0 0 0.3 0.2 0.3 0 0 45000 86000 0.9153 5.46397 1 1 0 0 1 0 4.7 2.3 3.7 3.1 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 CP000834 NC_009958 Plasmid pDSHI04 0.3895 70 86208 1231.5 0.741834 cir 0 0 0 10 2 0.4 0 0 40000 69000 0.9489 5.45421 0 0 0 0 0 0 6.4 3 3.7 3.2 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 CP000835 NC_009959 Plasmid pDSHI05 0.3113 73 72296 990.4 0.931601 cir 0 0 0 0 0 0.6 0 0 60000 10000 0.4246 5.79818 0 0 0 0 0 0 15.1 6.4 6.2 8.1 Bacteria Alphaproteobacteria 10694 Ehrlichia canis str. Jake CP000107 NC_007354 Chromosome 0.7104 925 1315030 1421.7 0.720771 cir 1 1 1 3.9 1.3 0.6 36 36 837 10.5 11000 655000 1.6546 4.24022 4 2 0 0 2 0 12.5 6.9 7.6 10.9 Bacteria Alphaproteobacteria 325 Ehrlichia chaffeensis str. Arkansas CP000236 NC_007799 Chromosome 0.699 1105 1176248 1064.5 0.793237 cir 1 1 1 6.7 1.8 0.6 37 37 828 33.5 22000 599000 1.8249 4.27063 4 3 0 0 3 0 11.1 5.9 7 9.5 Bacteria Alphaproteobacteria 13356 Ehrlichia ruminantium str. Gardel CR925677 NC_006831 Chromosome 0.7249 950 1499920 1578.9 0.637957 cir 1 1 1 4.8 1.5 0.7 36 36 860 10.5 1496000 701000 1.4051 4.19813 5 3 0 0 3 0 14.9 9.2 10.5 13.4 Bacteria Alphaproteobacteria 13355 Ehrlichia ruminantium str. Welgevonden CR925678 NC_006832 Chromosome 0.7252 958 1512977 1579.3 0.632312 cir 1 1 1 5.9 1.6 0.7 36 36 867 10.5 1509000 703000 1.4109 4.19681 5 3 0 0 3 0 14.9 9.3 10.4 13.4 Bacteria Alphaproteobacteria 9614 Ehrlichia ruminantium str. Welgevonden CR767821 NC_005295 Chromosome 0.7252 920 1516355 1648.2 0.625921 cir 1 1 1 6.2 1.6 0.7 36 36 836 10 15000 730000 1.4063 4.19676 4 3 0 0 3 0 14.9 9.3 10.4 13.4 Bacteria Other Bacteria 19701 Elusimicrobium minutum Pei191 CP001055 NC_010644 Chromosome 0.6005 1529 1643562 1074.9 0.903199 cir 1 1 1 2.3 1.1 0.4 45 45 1642000 813000 2.8264 4.60393 7 5 0 0 5 0 7.6 4.4 5.9 5.9 Bacteria Gammaproteobacteria 17461 Enterobacter sp. 638 CP000654 NC_009425 Plasmid pENTE01 0.4943 125 157749 1262 0.771181 cir 0 0 0 3.5 0.4 0.2 0 0 111 12.6 85000 15000 1.51 5.05036 1 1 0 0 1 0 4.5 2 3.6 2.5 Bacteria Gammaproteobacteria 17461 Enterobacter sp. 638 CP000653 NC_009436 Chromosome 0.4702 4115 4518712 1098.1 0.876703 cir 8 7 7 2.4 2 0.3 84 84 3919 5 4482000 2211000 1.0983 5.2061 33 18 0 4 22 0 4.1 1.8 2.8 2.3 Bacteria Firmicutes 70 Enterococcus faecalis V583 AE016830 NC_004668 Chromosome 0.6247 3113 3218031 1033.7 0.859929 cir 4 4 4 3.9 2.8 0.4 68 68 2460 26.5 3217000 1551000 2.8723 4.5435 17 8 1 1 10 0 6.5 3.4 5.1 4.9 Bacteria Firmicutes 70 Enterococcus faecalis V583 AE016833 NC_004669 Plasmid pTEF1 0.6559 72 66320 921.1 0.815817 cir 0 0 0 5.2 10 0.5 0 0 49 46.9 44000 8000 4.0154 4.39057 0 0 0 0 0 0 10.4 3.8 7.9 10.1 Bacteria Firmicutes 70 Enterococcus faecalis V583 AE016831 NC_004671 Plasmid pTEF2 0.661 62 57660 930 0.880923 cir 0 0 0 0 0 0.6 0 0 36 72.2 32000 6000 4.3427 4.36327 0 0 0 0 0 0 10.9 4.4 7.5 9.8 Bacteria Firmicutes 70 Enterococcus faecalis V583 AE016832 NC_004670 Plasmid pTEF3 0.6668 18 17963 997.9 0.743139 cir 0 0 0 9 0 0.7 0 0 10 80 2000 12000 3.5239 4.34271 0 0 0 0 0 0 8.8 5.6 7.7 8.2 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 CU468135 NC_010694 Chromosome 0.4627 3484 3883467 1114.7 0.857968 cir 8 7 7 2.4 1.6 0.4 81 81 19000 1933000 1.171 5.20108 26 13 0 1 14 0 4.4 2 3.2 2.3 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 CU468133 NC_010693 Plasmid pET46 0.5101 56 46159 824.3 0.768626 cir 0 0 0 0.3 2.6 0 0 0 35000 13000 1.5902 4.97893 0 0 0 0 0 0 3.1 2.1 3.9 2.5 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 CU468128 NC_010695 Plasmid pET09 0.5295 7 9299 1328.4 0.879772 cir 0 0 0 0 0.6 0.3 0 0 0 6000 1.8066 4.87894 0 0 0 0 0 0 7.6 1.9 6.7 2.6 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 CU468130 NC_010696 Plasmid pET35 0.6002 42 35494 845.1 0.85513 cir 0 0 0 0 0.3 0.4 0 0 35000 22000 2.3328 4.61288 0 0 0 0 0 0 5 2.4 4.3 3 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 CU468131 NC_010697 Plasmid pET49 0.5627 61 48751 799.2 0.831039 cir 0 0 0 1.4 0.6 0.2 0 0 48000 31000 2.0676 4.7834 0 0 0 0 0 0 5.2 1.8 4 3.3 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 CU468132 NC_010699 Plasmid pET45 0.492 46 44694 971.6 0.86958 cir 0 0 0 1.1 0 0.5 0 0 39000 20000 1.5505 5.08362 0 0 0 0 0 0 7 1.5 3.4 2.3 Bacteria Alphaproteobacteria 13480 Erythrobacter litoralis HTCC2594 CP000157 NC_007722 Chromosome 0.3693 3011 3052398 1013.7 0.911462 cir 1 1 1 4 0.6 0.5 44 43 2441 23.4 2626000 1298000 0.7939 5.59063 20 10 2 0 14 2 7.4 3.6 5 4.1 Bacteria Gammaproteobacteria 16235 Escherichia coli 536 CP000247 NC_008253 Chromosome 0.4948 4685 4938920 1054.2 0.884547 cir 8 7 7 3.9 3.2 0.3 81 81 4348 7.8 4107000 1536000 1.1826 5.10669 38 20 0 3 23 0 3.8 1.9 3.2 2.3 Bacteria Gammaproteobacteria 33413 Escherichia coli 55989 CU928145 NC_011748 Chromosome 0.4934 4919 5154862 1047.9 0.882623 cir 8 7 7 5.9 5.1 0.3 94 94 4311000 1646000 1.1818 5.10941 37 20 0 3 23 0 4 1.9 3.2 2.3 Bacteria Gammaproteobacteria 16718 Escherichia coli APEC O1 CP000468 NC_008563 Chromosome 0.4945 4467 5082025 1137.7 0.869847 cir 8 7 7 3.6 4.4 0.3 94 96 4363 2.4 4218000 1593000 1.1671 5.10765 39 21 0 3 24 0 3.9 1.9 3.2 2.3 Bacteria Gammaproteobacteria 16718 Escherichia coli APEC O1 DQ517526 NC_009838 Plasmid pAPEC-O1-R 0.5357 224 241387 1077.6 0.826175 cir 0 0 0 3.4 2.3 0.2 0 0 217000 58000 1.9106 4.86045 2 2 0 0 2 0 4.6 2.1 3.9 2.6 Bacteria Gammaproteobacteria 16718 Escherichia coli APEC O1 DQ381420 NC_009837 Plasmid pAPEC-O1-ColBM 0.5035 199 174241 875.6 0.845278 cir 0 0 0 9.5 7.1 0.3 0 0 167000 64000 1.5238 5.01963 0 0 0 0 0 0 4.4 2.2 3.8 2.3 Bacteria Gammaproteobacteria 18083 Escherichia coli ATCC 8739 CP000946 NC_010468 Chromosome 0.4913 4200 4746218 1130.1 0.861427 cir 8 7 7 4.1 3 0.3 87 87 4699000 2391000 1.1268 5.12254 39 22 0 3 25 0 4 1.9 3.2 2.3 Bacteria Gammaproteobacteria 313 Escherichia coli CFT073 AE014075 NC_004431 Chromosome 0.4952 5379 5231428 972.6 0.879297 cir 7 7 7 5.4 5 0.3 89 89 4643 15.9 4428000 1730000 1.1997 5.10321 40 22 0 3 25 0 3.8 1.9 3.2 2.3 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000795 NC_009786 Plasmid pETEC_80 0.5273 68 79237 1165.2 0.533438 cir 0 0 0 11.6 14.4 0.3 0 0 20000 71000 1.7757 4.92434 0 0 0 0 0 0 5.8 2.4 4.2 3.9 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000800 NC_009801 Chromosome 0.4938 4755 4979619 1047.2 0.859482 cir 8 7 7 4.8 3.7 0.3 91 91 4245000 1638000 1.1537 5.10991 36 19 0 3 22 0 4 1.8 3.2 2.3 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000796 NC_009787 Plasmid pETEC_35 0.4838 29 34367 1185.1 0.61786 cir 0 0 0 2.3 0 0.4 0 0 13000 32000 2.0368 5.09397 0 0 0 0 0 0 4.5 2.1 3.5 3.4 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000797 NC_009788 Plasmid pETEC_73 0.4979 68 70609 1038.4 0.632341 cir 0 0 0 3.3 0.2 0.3 0 0 13000 57000 1.6174 5.03837 0 0 0 0 0 0 3.9 2 4.5 2.2 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000798 NC_009789 Plasmid pETEC_6 0.4743 5 6199 1239.8 0.401678 cir 0 0 0 0 0 0 0 0 6000 4000 1.8551 5.12822 0 0 0 0 0 0 3.6 1.3 4.4 4.9 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000799 NC_009790 Plasmid pETEC_74 0.5015 69 74224 1075.7 0.662063 cir 0 0 0 23.4 11.8 0.4 0 0 42000 16000 1.6181 5.01195 0 0 0 0 0 0 4.1 1.8 4.2 2.5 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A CP000801 NC_009791 Plasmid pETEC_5 0.5037 3 5033 1677.7 0.374329 cir 0 0 0 0 0 0 0 0 5000 3000 2.8015 4.94306 0 0 0 0 0 0 2.9 1.4 7.4 3.7 Bacteria Gammaproteobacteria 33409 Escherichia coli ED1a CU928162 NC_011745 Chromosome 0.4927 5123 5209548 1016.9 0.880666 cir 8 7 7 6.1 6.5 0.3 91 91 4362000 1629000 1.186 5.1131 39 20 0 4 24 0 4 1.8 3.3 2.3 Bacteria Gammaproteobacteria 13959 Escherichia coli HS CP000802 NC_009800 Chromosome 0.4918 4384 4643538 1059.2 0.863915 cir 8 7 7 3.7 3.2 0.3 88 88 3957000 1574000 1.1375 5.11956 37 20 0 3 23 0 3.9 1.9 3.2 2.2 Bacteria Gammaproteobacteria 33373 Escherichia coli IAI1 CU928160 NC_011741 Chromosome 0.4921 4443 4700560 1058 0.887128 cir 8 7 7 3.3 3.3 0.3 86 86 4002000 1553000 1.1402 5.11936 36 19 0 3 22 0 4 1.9 3.2 2.3 Bacteria Gammaproteobacteria 33411 Escherichia coli IAI39 CU928164 NC_011750 Chromosome 0.4937 4892 5132068 1049.1 0.884222 cir 8 7 7 6.3 6.5 0.3 88 88 4529000 1876000 1.1997 5.10953 36 19 0 3 22 0 3.8 1.8 3.1 2.3 Bacteria Gammaproteobacteria 33825 Escherichia coli LF82 CU651637 NC_011993 Chromosome 0.493 4319 4773108 1105.1 0.880454 cir 8 7 7 2.2 2.1 0.3 84 86 3973000 1502000 1.1498 5.11608 38 20 0 3 23 0 3.9 1.8 3.3 2.2 Bacteria Gammaproteobacteria 32571 Escherichia coli O127:H6 str. E2348/69 FM180570 NC_011602 Plasmid pE2348-2 0.4724 9 6147 683 0.760859 cir 0 0 0 0 0 0 0 0 0 2000 1.8871 5.13231 0 0 0 0 0 0 2.5 1.4 3.8 4.7 Bacteria Gammaproteobacteria 32571 Escherichia coli O127:H6 str. E2348/69 FM180568 NC_011601 Chromosome 0.4943 4703 4965553 1055.8 0.878749 cir 8 7 7 4.8 3.7 0.3 92 92 4223000 1701000 1.192 5.10731 37 20 0 3 23 0 3.9 1.9 3.1 2.3 Bacteria Gammaproteobacteria 32571 Escherichia coli O127:H6 str. E2348/69 FM180569 NC_011603 Plasmid pMAR2 0.5199 112 97978 874.8 0.843587 cir 0 0 0 0.4 4.4 0.3 0 0 77000 31000 1.8678 4.95799 0 0 0 0 0 0 5.1 2.2 3.4 3.6 Bacteria Gammaproteobacteria 259 Escherichia coli O157:H7 EDL933 AF074613 NC_007414 Plasmid pO157 0.5236 100 92077 920.8 0.856511 cir 0 0 0 1.4 3.1 0.6 0 0 80 25 76000 46000 2.0298 4.9426 0 0 0 0 0 0 5.8 2.3 3.9 2.8 Bacteria Gammaproteobacteria 259 Escherichia coli O157:H7 EDL933 AE005174 NC_002655 Chromosome 0.495 5349 5528445 1033.5 0.87135 cir 8 7 7 11.3 8.4 0.3 98 100 4899 9.2 4783000 2010000 1.1968 5.10119 38 20 0 4 24 0 4.1 1.9 3.2 2.4 Bacteria Gammaproteobacteria 27739 Escherichia coli O157:H7 str. EC4115 CP001163 NC_011350 Plasmid pO157 0.5211 108 94644 876.3 0.839757 cir 0 0 0 3.9 4.2 0.6 0 0 39000 7000 2.0181 4.95281 0 0 0 0 0 0 5.9 2.2 3.7 2.8 Bacteria Gammaproteobacteria 27739 Escherichia coli O157:H7 str. EC4115 CP001164 NC_011353 Chromosome 0.4948 5315 5572075 1048.4 0.830854 cir 8 7 7 10.5 10.1 0.3 110 109 4823000 1988000 1.2029 5.10337 38 20 0 4 24 0 4.1 1.9 3.1 2.4 Bacteria Gammaproteobacteria 27739 Escherichia coli O157:H7 str. EC4115 CP001165 NC_011351 Plasmid pEC4115 0.6029 54 37452 693.6 0.83619 cir 0 0 0 5 0 0.5 0 0 37000 22000 2.5553 4.63886 0 0 0 0 0 0 6.5 2.2 6.4 3.7 Bacteria Gammaproteobacteria 226 Escherichia coli O157:H7 str. Sakai BA000007 NC_002695 Chromosome 0.4946 5361 5498450 1025.6 0.876385 cir 8 7 7 8.6 8.6 0.3 105 103 4884 9.8 4725000 2074000 1.1977 5.10446 38 20 0 4 24 0 4.1 1.8 3.2 2.4 Bacteria Gammaproteobacteria 226 Escherichia coli O157:H7 str. Sakai AB011549 NC_002128 Plasmid pO157 0.524 83 92721 1117.1 0.783706 cir 0 0 0 1.5 3.1 0.6 0 0 74 12.2 53000 23000 2.0125 4.94042 0 0 0 0 0 0 5.7 2.3 3.9 2.9 Bacteria Gammaproteobacteria 226 Escherichia coli O157:H7 str. Sakai AB011548 NC_002127 Plasmid pOSAK1 0.5659 3 3306 1102 0.526921 cir 0 0 0 0 0 0 0 0 1 200 2000 1000 2.7223 4.7462 0 0 0 0 0 0 6.4 3.7 7 7.8 Bacteria Gammaproteobacteria 33375 Escherichia coli S88 CU928161 NC_011742 Chromosome 0.4932 4847 5032268 1038.2 0.885425 cir 8 7 7 4.6 2.9 0.3 91 91 4135000 1561000 1.1602 5.11299 38 21 0 3 24 0 3.9 1.9 3.2 2.3 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009244 NC_011407 Plasmid pSE11-4 0.52 10 6929 692.9 0.650455 cir 0 0 0 0 0.8 0 0 0 3000 1000 2.7132 4.86361 0 0 0 0 0 0 4.4 1.4 3.7 3.1 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009240 NC_011415 Chromosome 0.492 4679 4887515 1044.6 0.888065 cir 8 7 7 4.6 3.8 0.3 86 90 4185000 1656000 1.1394 5.11899 36 19 0 3 22 0 4 1.9 3.2 2.3 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009245 NC_011408 Plasmid pSE11-5 0.5378 7 5366 766.6 0.703876 cir 0 0 0 0 0 0 0 0 5000 2000 4.2117 4.8099 0 0 0 0 0 0 7.7 0.6 3 5.3 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009246 NC_011411 Plasmid pSE11-6 0.5056 3 4082 1360.7 0.763596 cir 0 0 0 0 0 0.9 0 0 3000 1000 0.7839 5.01492 0 0 0 0 0 0 9 5 3.4 0.8 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009242 NC_011413 Plasmid pSE11-2 0.4976 112 91158 813.9 0.837524 cir 0 0 0 2 0.8 0.2 0 0 23000 76000 2.0119 5.04585 0 0 0 0 0 0 4.8 1.9 4.1 2.7 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009243 NC_011416 Plasmid pSE11-3 0.5141 67 60555 903.8 0.769482 cir 0 0 0 2.1 2.3 0.2 0 0 15000 36000 2.0147 4.98585 0 0 0 0 0 0 3.8 1.7 4.6 2.4 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 AP009241 NC_011419 Plasmid pSE11-1 0.4954 124 100021 806.6 0.862589 cir 0 0 0 3.7 0 0.3 0 0 52000 99000 1.6537 5.05156 0 0 0 0 0 0 3.5 1.7 3.7 2.5 Bacteria Gammaproteobacteria 19469 Escherichia coli SMS-3-5 CP000972 NC_010485 Plasmid pSMS35_8 0.5316 10 8909 890.9 0.64418 cir 0 0 0 0 0 0.3 0 0 4000 0 3.1317 4.8318 0 0 0 0 0 0 4.5 0.7 5.8 3 Bacteria Gammaproteobacteria 19469 Escherichia coli SMS-3-5 CP000970 NC_010498 Chromosome 0.495 4743 5068389 1068.6 0.873543 cir 8 7 7 3.7 3 0.3 90 90 4211000 1731000 1.1532 5.10727 38 20 0 3 23 0 3.9 1.9 3.1 2.3 Bacteria Gammaproteobacteria 19469 Escherichia coli SMS-3-5 CP000973 NC_010486 Plasmid pSMS35_4 0.5044 4 4074 1018.5 0.847079 cir 0 0 0 0 0 0.9 0 0 3000 1000 0.5891 5.02553 0 0 0 0 0 0 6.1 5 2.6 1.6 Bacteria Gammaproteobacteria 19469 Escherichia coli SMS-3-5 CP000974 NC_010487 Plasmid pSMS35_3 0.5697 3 3565 1188.3 0.412342 cir 0 0 0 3.7 0 0.9 0 0 2000 3000 2.6928 4.76417 0 0 0 0 0 0 9.8 5.5 8.8 4.1 Bacteria Gammaproteobacteria 19469 Escherichia coli SMS-3-5 CP000971 NC_010488 Plasmid pSMS35_130 0.4919 153 130440 852.5 0.790432 cir 0 0 0 13.2 10.2 0.3 0 0 64000 129000 1.4451 5.07478 0 0 0 0 0 0 5.5 2.2 3.7 2.8 Bacteria Gammaproteobacteria 33415 Escherichia coli UMN026 CU928163 NC_011751 Chromosome 0.4928 4907 5202090 1060.1 0.885735 cir 8 7 7 4.6 3.2 0.3 88 88 4414000 1727000 1.1796 5.11404 37 20 0 3 23 0 4 1.9 3.2 2.3 Bacteria Gammaproteobacteria 33415 Escherichia coli UMN026 CU928148 NC_011749 Plasmid p1ESCUM 0.4949 151 122301 809.9 0.824253 cir 0 0 0 3 4.8 0.3 0 0 88000 46000 1.5053 5.06144 0 0 0 0 0 0 5.1 2.3 3.9 3.2 Bacteria Gammaproteobacteria 16259 Escherichia coli UTI89 CP000243 NC_007946 Chromosome 0.494 5066 5065741 999.9 0.892184 cir 8 7 7 3.4 2.5 0.3 88 89 4514 12.2 4186000 1601000 1.1627 5.11087 37 21 0 3 24 0 3.8 1.9 3.2 2.2 Bacteria Gammaproteobacteria 16259 Escherichia coli UTI89 CP000244 NC_007941 Plasmid pUTI89 0.4897 145 114230 787.8 0.794747 cir 0 0 0 1.4 3.2 0.2 0 0 117 23.9 79000 15000 1.5574 5.07999 0 0 0 0 0 0 4.8 2.2 4 3 Bacteria Gammaproteobacteria 20079 Escherichia coli str. K-12 substr. DH10B CP000948 NC_010473 Chromosome 0.4922 4200 4686137 1115.7 0.84568 cir 8 7 7 8.8 3.5 0.3 86 87 4022000 1641000 1.1342 5.11854 37 20 0 3 23 0 3.9 1.8 3.2 2.3 Bacteria Gammaproteobacteria 225 Escherichia coli str. K-12 substr. MG1655 U00096 NC_000913 Chromosome 0.4921 4267 4639675 1087.3 0.87863 cir 8 7 7 3.7 3.2 0.3 85 88 4095 4.2 3925000 1550000 1.1302 5.11979 37 20 0 3 23 0 3.9 1.8 3.2 2.3 Bacteria Gammaproteobacteria 16351 Escherichia coli str. K-12 substr. W3110 AP009048 AC_000091 Chromosome 0.492 4337 4646332 1071.3 0.877371 cir 8 7 7 4 3.8 0.3 86 88 4209 3 3714000 1554000 1.1291 5.12005 37 20 0 3 23 0 3.9 1.8 3.2 2.3 Bacteria Gammaproteobacteria 33369 Escherichia fergusonii ATCC 35469 CU928158 NC_011740 Chromosome 0.5006 4319 4588711 1062.4 0.89255 cir 8 7 7 3 1.6 0.3 87 87 4152000 1588000 1.1534 5.0796 34 18 0 3 21 0 3.7 1.7 3 2.3 Bacteria Firmicutes 10649 Exiguobacterium sibiricum 255-15 CP001022 NC_010556 Chromosome 0.5228 3007 3034136 1009 0.877336 cir 9 9 9 3.5 3.7 0.3 69 69 1000 1565000 2.0317 5.00307 24 23 0 2 25 0 4.2 1.6 3.6 2.3 Bacteria Firmicutes 10649 Exiguobacterium sibiricum 255-15 CP001023 NC_010549 Plasmid pEXIG01 0.6295 5 4885 977 0.525077 cir 0 0 0 0 0 0 0 0 3000 1000 4.5855 4.46435 0 0 0 0 0 0 7 3.4 15.7 6.4 Bacteria Firmicutes 10649 Exiguobacterium sibiricum 255-15 CP001024 NC_010550 Plasmid pEXIG02 0.5864 3 1765 588.3 0.716714 cir 0 0 0 0 0 0 0 0 0 0 3.9093 4.64632 0 0 0 0 0 0 1.7 0 1.7 4.1 Bacteria Thermotogae 16719 Fervidobacterium nodosum Rt17-B1 CP000771 NC_009718 Chromosome 0.6501 1750 1948941 1113.7 0.901571 cir 2 2 2 4.1 3.2 0.4 50 50 1386000 441000 3.2082 4.40684 13 5 0 0 5 0 7.8 3.7 4.8 6.1 Bacteria Firmicutes 18981 Finegoldia magna ATCC 29328 AP008972 NC_010371 Plasmid pFMC 0.7027 182 189163 1039.4 0.849664 cir 0 0 0 10.6 2.2 1 0 0 64000 4000 3.8443 4.20163 0 0 0 0 0 0 17.1 5.5 8.3 11.9 Bacteria Firmicutes 18981 Finegoldia magna ATCC 29328 AP008971 NC_010376 Chromosome 0.6769 1631 1797577 1102.1 0.906721 cir 4 4 4 3.1 1.6 0.7 48 48 1796000 813000 2.9185 4.34993 13 8 0 0 8 0 11 4.5 6.8 8.3 Bacteria Bacteroidetes/Chlorobi 16082 Flavobacterium johnsoniae UW101 CP000685 NC_009441 Chromosome 0.6589 5017 6096872 1215.2 0.872558 cir 6 6 6 3.9 2.3 0.6 62 62 4140 21.2 1163000 3392000 2.6594 4.40116 72 37 0 5 42 0 9.2 5.3 7.5 6.8 Bacteria Bacteroidetes/Chlorobi 19979 Flavobacterium psychrophilum JIP02/86 AM398681 NC_009613 Chromosome 0.6746 2432 2861988 1176.8 0.848693 cir 6 6 6 6.2 4.3 0.7 49 49 2004 21.4 2852000 1063000 2.561 4.35456 15 10 0 1 11 0 11.2 6.3 8.3 9 Bacteria Gammaproteobacteria 16088 Francisella novicida U112 CP000439 NC_008601 Chromosome 0.6752 1719 1910031 1111.1 0.893798 cir 4 3 3 2.9 2 0.5 38 38 1547 11.1 36000 871000 1.2168 4.29626 3 3 0 0 3 0 8.8 5.2 6.2 6.8 Bacteria Gammaproteobacteria 27853 Francisella philomiragia subsp. philomiragia ATCC 25017 CP000938 NC_010331 Plasmid pFPHI01 0.7157 4 3936 984 0.368394 cir 0 0 0 9 0 0 0 0 3000 1000 3.6585 4.17072 0 0 0 0 0 0 19.1 6.1 12.1 10.1 Bacteria Gammaproteobacteria 27853 Francisella philomiragia subsp. philomiragia ATCC 25017 CP000937 NC_010336 Chromosome 0.6743 1911 2045775 1070.5 0.910213 cir 4 3 3 4.1 3.4 0.5 39 39 922000 1863000 1.3181 4.28872 3 3 0 0 3 0 8.4 4.7 5.6 6.8 Bacteria Gammaproteobacteria 16421 Francisella tularensis subsp. holarctica AM233362 NC_007880 Chromosome 0.6785 1967 1895994 963.9 0.879296 cir 4 3 3 9.1 5.4 0.5 38 38 1544 27.4 7000 1223000 1.2425 4.28524 1 2 0 0 2 0 9 5.3 6.4 7 Bacteria Gammaproteobacteria 20197 Francisella tularensis subsp. holarctica FTNF002-00 CP000803 NC_009749 Chromosome 0.6784 1580 1890909 1196.8 0.76139 cir 4 3 3 8.8 5.1 0.5 38 38 100000 1223000 1.2431 4.28535 1 1 0 0 1 0 9 5.3 6.4 7 Bacteria Gammaproteobacteria 17265 Francisella tularensis subsp. holarctica OSU18 CP000437 NC_008369 Chromosome 0.6784 1555 1895727 1219.1 0.744511 cir 4 3 3 8.9 5.4 0.5 38 38 1337 16.3 100000 1226000 1.2465 4.28535 1 1 0 0 1 0 8.9 5.3 6.4 7 Bacteria Gammaproteobacteria 19571 Francisella tularensis subsp. mediasiatica FSC147 CP000915 NC_010677 Chromosome 0.6775 1406 1893886 1347 0.718439 cir 4 3 3 7.3 4.6 0.5 38 38 35000 1029000 1.2597 4.28871 2 2 0 0 2 0 8.9 5.3 6.1 7 Bacteria Gammaproteobacteria 17375 Francisella tularensis subsp. tularensis FSC198 AM286280 NC_008245 Chromosome 0.6774 1804 1892616 1049.1 0.897184 cir 4 3 3 7.5 3.7 0.5 38 38 1417 27.3 0 1003000 1.2384 4.2881 2 2 0 0 2 0 8.9 5.3 6.2 6.9 Bacteria Gammaproteobacteria 9 Francisella tularensis subsp. tularensis SCHU S4 AJ749949 NC_006570 Chromosome 0.6774 1804 1892819 1049.2 0.897088 cir 4 3 3 7.6 3.7 0.5 38 38 1415 27.5 0 1003000 1.2381 4.28808 2 2 0 0 2 0 8.9 5.3 6.2 6.9 Bacteria Gammaproteobacteria 18459 Francisella tularensis subsp. tularensis WY96-3418 CP000608 NC_009257 Chromosome 0.6773 1634 1898476 1161.9 0.79908 cir 4 3 3 7.9 3.8 0.5 38 38 1433 14 0 863000 1.2435 4.28901 2 3 0 0 3 0 8.9 5.3 6.2 6.8 Bacteria Actinobacteria 17403 Frankia alni ACN14a CT573213 NC_008278 Chromosome 0.2717 6723 7497934 1115.3 0.862112 cir 2 2 2 4.2 2.3 1.6 46 46 5000 34.5 2000 4028000 0.3914 5.96342 56 19 1 14 34 0 22 11.5 14.8 14 Bacteria Actinobacteria 13963 Frankia sp. CcI3 CP000249 NC_007777 Chromosome 0.2992 4499 5433628 1207.7 0.847198 cir 2 2 2 6.5 4.4 1.2 46 46 3730 20.6 45000 2755000 0.5432 5.83935 33 19 1 5 25 0 15.4 7.5 10.1 9.3 Bacteria Actinobacteria 13915 Frankia sp. EAN1pec CP000820 NC_009921 Chromosome 0.2885 7191 8982042 1249.1 0.834997 cir 3 3 3 8.8 7.3 1.1 47 47 4000 4948000 0.4586 5.88395 67 21 1 34 56 0 17.3 9.6 12.5 11.2 Bacteria Fusobacteria 295 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 AE009951 NC_003454 Chromosome 0.7285 2067 2174500 1052 0.888583 cir 5 5 5 5.1 4.9 1.1 47 47 1709 20.9 641000 1828000 4.5954 4.06056 6 2 1 0 3 0 20.1 10.3 12.7 16.8 Bacteria Firmicutes 13233 Geobacillus kaustophilus HTA426 BA000043 NC_006510 Chromosome 0.4791 3498 3544776 1013.4 0.848352 cir 9 9 9 7.4 6.3 0.4 87 87 2922 19.7 0 1756000 3.1952 5.18418 28 17 0 4 21 0 5.4 2.3 4.2 3.3 Bacteria Firmicutes 13233 Geobacillus kaustophilus HTA426 AP006520 NC_006509 Plasmid pHTA426 0.5585 42 47890 1140.2 0.79171 cir 0 0 0 2.1 0.8 0.3 0 0 32 31.2 40000 12000 3.3681 4.77983 0 0 0 0 0 0 4.6 1.9 5 3.1 Bacteria Firmicutes 18655 Geobacillus thermodenitrificans NG80-2 CP000557 NC_009328 Chromosome 0.5099 3392 3550319 1046.7 0.83516 cir 10 10 10 3.7 3 0.3 87 87 2874 18 3000 1714000 3.2592 5.05429 27 18 0 3 21 0 4.5 2.1 3.7 2.9 Bacteria Firmicutes 18655 Geobacillus thermodenitrificans NG80-2 CP000558 NC_009329 Plasmid pLW1071 0.6025 53 57693 1088.5 0.821659 cir 0 0 0 1.8 9.5 0.4 0 0 41 29.3 28000 49000 4.387 4.61063 0 0 0 0 0 0 6.6 2.9 6.6 4.8 Bacteria Deltaproteobacteria 17707 Geobacter bemidjiensis Bem CP001124 NC_011146 Chromosome 0.3973 4018 4615150 1148.6 0.869188 cir 4 4 4 3.6 2.7 0.7 58 58 4614000 2498000 3.3157 5.31973 149 93 0 3 96 0 7.2 3.1 4.1 4 Bacteria Deltaproteobacteria 17423 Geobacter lovleyi SZ CP001089 NC_010814 Chromosome 0.4523 3606 3917761 1086.5 0.91687 cir 2 2 2 4.6 2.7 0.4 45 45 285000 2055000 1.3701 5.1649 127 71 0 3 74 0 4.9 1.7 3.2 2.1 Bacteria Deltaproteobacteria 17423 Geobacter lovleyi SZ CP001090 NC_010815 Plasmid pGLOV01 0.4703 79 77113 976.1 0.880318 cir 0 0 0 0.6 0 0.2 0 0 34000 68000 1.6508 5.09054 0 0 0 0 0 0 4.4 2.2 3.3 2.4 Bacteria Deltaproteobacteria 177 Geobacter metallireducens GS-15 CP000149 NC_007515 Plasmid unnamed 0.4752 13 13762 1058.6 0.729763 cir 0 0 0 0 0 0.2 0 0 7 85.7 11000 4000 4.3671 5.04567 0 0 0 0 0 0 7.8 3 1.5 4.8 Bacteria Deltaproteobacteria 177 Geobacter metallireducens GS-15 CP000148 NC_007517 Chromosome 0.4049 3519 3997420 1136 0.907291 cir 2 2 2 4.7 3.9 0.5 50 49 3113 13 1000 2032000 3.391 5.31143 89 65 0 1 66 0 6.5 2.9 3.7 3.6 Bacteria Deltaproteobacteria 16263 Geobacter sp. FRC-32 CP001390 NC_011979 Chromosome 0.4653 3798 4304501 1133.4 0.897853 cir 2 2 2 3 1.8 0.4 49 49 2000 3012000 2.992 5.09909 106 67 0 0 67 0 4.2 1.9 3 2.3 Bacteria Deltaproteobacteria 192 Geobacter sulfurreducens PCA AE017180 NC_002939 Chromosome 0.3906 3447 3814139 1106.5 0.896026 cir 2 2 2 2.6 1.6 0.5 49 49 2913 18.3 2000 1896000 2.4584 5.39762 105 75 0 3 78 0 6.5 3 3.9 3.7 Bacteria Deltaproteobacteria 15768 Geobacter uraniireducens Rf4 CP000698 NC_009483 Chromosome 0.4576 4357 5136364 1178.9 0.868515 cir 2 2 2 7.1 6.1 0.6 49 49 3648 19.4 5095000 2517000 2.7418 5.15004 114 68 2 3 73 0 4.9 2.1 3.6 2.7 Bacteria Cyanobacteria 9606 Gloeobacter violaceus PCC 7421 BA000045 NC_005125 Chromosome 0.38 4430 4659019 1051.7 0.891482 cir 1 1 1 4.1 2.8 0.5 45 44 3543 25 3785000 832000 0.6596 5.46837 47 37 1 2 40 0 6.7 3.4 4.3 4 Bacteria Alphaproteobacteria 21071 Gluconacetobacter diazotrophicus PAl 5 CP001189 NC_011365 Chromosome 0.3362 3472 3887492 1119.7 0.881526 cir 4 4 4 6.6 6.3 0.9 55 55 2191000 182000 0.695 5.75456 28 12 1 1 14 0 11.7 6.2 7.7 7.1 Bacteria Alphaproteobacteria 21071 Gluconacetobacter diazotrophicus PAl 5 CP001190 NC_011367 Plasmid pGDIA01 0.4147 29 27455 946.7 0.76456 cir 0 0 0 0.3 0 0.2 0 0 26000 17000 1.6099 5.38433 0 0 0 0 0 0 6.8 2.2 5.4 4 Bacteria Alphaproteobacteria 377 Gluconacetobacter diazotrophicus PAl 5 AM889285 NC_010125 Chromosome 0.3357 3864 3944163 1020.7 0.914828 cir 4 4 4 7.8 8.5 0.9 55 55 3665000 2006000 0.6979 5.75641 29 13 1 1 15 0 11.5 6.2 7.6 7 Bacteria Alphaproteobacteria 377 Gluconacetobacter diazotrophicus PAl 5 AM889286 NC_010123 Plasmid pGDIPal5II 0.36 21 16610 791 0.804455 cir 0 0 0 0 0 0.2 0 0 5000 16000 0.7947 5.61921 0 0 0 0 0 0 7.9 4.4 5.3 3.9 Bacteria Alphaproteobacteria 377 Gluconacetobacter diazotrophicus PAl 5 AM889287 NC_010124 Plasmid pGDIPal5I 0.4319 53 38818 732.4 0.812767 cir 0 0 0 2.8 0 0.5 0 0 7000 30000 2.5401 5.28211 0 0 0 0 0 0 5.4 2.4 6.1 2.5 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H CP000009 NC_006677 Chromosome 0.3893 2432 2702173 1111.1 0.898036 cir 4 4 4 3.2 4 0.4 50 55 2140 13.6 1102000 2571000 0.9575 5.47847 21 10 2 1 15 2 6 2.5 3.9 3.2 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H CP000004 NC_006672 Plasmid pGOX1 0.4168 163 163186 1001.1 0.864339 cir 0 0 0 1.4 1.5 0.1 0 0 133 22.6 20000 109000 1.4762 5.33563 0 0 0 0 0 0 3.9 1.9 3.4 2.8 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H CP000005 NC_006673 Plasmid pGOX2 0.4389 29 26568 916.1 0.715334 cir 0 0 0 10.7 7.7 0 0 0 26 11.5 7000 19000 2.1605 5.22672 0 0 0 0 0 0 4.5 2.6 4.2 2.9 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H CP000006 NC_006674 Plasmid pGOX3 0.4403 18 14547 808.2 0.804358 cir 0 0 0 0 0 0.5 0 0 9 100 11000 2000 1.203 5.26837 0 0 0 0 0 0 5.4 2.6 2.6 3 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H CP000007 NC_006675 Plasmid pGOX4 0.4563 18 13223 734.6 0.696211 cir 0 0 0 7.7 15.5 0.2 0 0 11 63.6 0 5000 1.2403 5.15401 0 0 0 0 0 0 3.6 3.4 3.9 1.5 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H CP000008 NC_006676 Plasmid pGOX5 0.4004 4 2687 671.8 0.526982 cir 0 0 0 0 0 0 0 0 1000 2000 2.9029 5.35201 0 0 0 0 0 0 7.9 1.1 7.1 1.3 Bacteria Bacteroidetes/Chlorobi 19061 Gramella forsetii KT0803 CU207366 NC_008571 Chromosome 0.6339 3584 3798465 1059.8 0.903306 cir 3 3 3 3.2 1.8 0.4 44 44 2833 26.5 3490000 1642000 3 4.43202 32 20 1 1 22 0 6.1 3.5 4.7 4.6 Bacteria Alphaproteobacteria 17111 Granulibacter bethesdensis CGDNIH1 CP000394 NC_008343 Chromosome 0.4093 2437 2708355 1111.3 0.915805 cir 3 3 3 1.9 1.1 0.4 52 52 2122 14.8 0 1342000 1.2341 5.42265 20 12 1 1 15 1 5.5 2 3.9 2.6 Bacteria Gammaproteobacteria 38 Haemophilus ducreyi 35000HP AE017143 NC_002940 Chromosome 0.6178 1717 1698955 989.5 0.84792 cir 7 6 6 4.8 3.8 0.4 45 48 1402 22.5 0 1178000 1.1308 4.63398 3 1 0 0 1 0 5.9 3.1 4.5 4.3 Bacteria Gammaproteobacteria 11752 Haemophilus influenzae 86-028NP CP000057 NC_007146 Chromosome 0.6185 1792 1913428 1067.8 0.867837 cir 7 6 6 2.9 3.5 0.5 58 58 1695 5.7 734000 1620000 1.5851 4.62145 6 3 0 1 4 0 6.2 3.3 5.1 4.4 Bacteria Gammaproteobacteria 16400 Haemophilus influenzae PittEE CP000671 NC_009566 Chromosome 0.6196 1623 1813033 1117.1 0.796771 cir 7 6 6 3.1 3.5 0.5 38 58 1540 5.4 296000 947000 1.6007 4.6182 5 2 0 1 3 0 6.1 3.3 5 4.4 Bacteria Gammaproteobacteria 16401 Haemophilus influenzae PittGG CP000672 NC_009567 Chromosome 0.6199 1670 1887192 1130.1 0.752127 cir 7 6 6 3.1 2.5 0.5 36 56 1540 8.4 1145000 127000 1.6243 4.61623 6 3 0 1 4 0 6.3 3.4 5 4.5 Bacteria Gammaproteobacteria 219 Haemophilus influenzae Rd KW20 L42023 NC_000907 Chromosome 0.6185 1709 1830138 1070.9 0.85492 cir 7 6 6 3.4 3 0.5 18 58 1706 0.2 324000 1476000 1.5731 4.62239 5 2 0 1 3 0 6.2 3.4 5.1 4.4 Bacteria Gammaproteobacteria 31099 Haemophilus parasuis SH0165 CP001321 NC_011852 Chromosome 0.6001 2021 2269156 1122.8 0.793707 cir 8 6 6 8.6 7.3 0.4 56 56 1979000 439000 1.6028 4.65738 4 3 0 1 4 0 6 2.9 4.9 3.8 Bacteria Gammaproteobacteria 322 Haemophilus somnus 129PT CP000436 NC_008309 Chromosome 0.628 1792 2007700 1120.4 0.879234 cir 6 5 5 4.7 4 0.5 50 50 1636 9.5 1931000 959000 1.7598 4.56569 4 2 0 1 3 0 6.8 3.3 4.8 4.8 Bacteria Gammaproteobacteria 322 Haemophilus somnus 129PT CP000019 NC_006298 Plasmid pHS129 0.6503 6 5178 863 0.515643 cir 0 0 0 3.8 20.4 2.1 0 0 2 200 2000 5000 3.9977 4.41667 0 0 0 0 0 0 11.8 7.5 17.8 12.1 Bacteria Gammaproteobacteria 388 Haemophilus somnus 2336 CP000947 NC_010519 Chromosome 0.6262 1980 2263857 1143.4 0.872483 cir 6 5 5 5.4 3.1 0.5 48 48 2219000 1536000 1.7744 4.57391 5 3 0 1 4 0 6.5 3.4 4.8 4.9 Bacteria Gammaproteobacteria 16064 Hahella chejuensis KCTC 2396 CP000155 NC_007645 Chromosome 0.4613 6782 7215267 1063.9 0.878749 cir 5 5 5 3.1 3.1 0.3 67 67 5190 30.7 7213000 3403000 1.3598 5.17572 119 61 0 3 64 0 4.1 1.9 2.8 2.4 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596297 NC_006396 Chromosome I 0.3764 3131 3131724 1000.2 0.862385 cir 2 2 2 1.5 1.2 0.6 48 48 2385 31.3 1471000 2412000 0.5828 5.53284 28 27 0 0 27 0 8.2 3 5.5 3.9 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596298 NC_006397 Chromosome II 0.4277 281 288050 1025.1 0.765784 cir 1 1 1 3.1 1.6 0.3 1 1 166 69.3 231000 124000 0.6093 5.31339 3 1 0 0 1 0 4.7 1.9 3.5 2.3 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596290 NC_006389 Plasmid pNG100 0.4575 36 33303 925.1 0.675975 cir 0 0 0 1 0 0.6 0 0 14 157.1 14000 0 0.6876 5.15165 0 0 0 0 0 0 3.6 2.7 3.8 2.7 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596291 NC_006390 Plasmid pNG200 0.4437 42 33452 796.5 0.779176 cir 0 0 0 1.2 0 0.4 0 0 15 180 20000 1000 0.9446 5.23749 0 0 0 0 0 0 4.5 2.4 3.6 3 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596292 NC_006391 Plasmid pNG300 0.3998 40 39521 988 0.771716 cir 0 0 0 0.7 0 0.4 0 0 12 233.3 30000 17000 0.4656 5.43648 0 0 0 0 0 0 13 2.3 6 3.2 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596293 NC_006392 Plasmid pNG400 0.4265 51 50060 981.6 0.755573 cir 0 0 0 1.2 0 0.4 0 0 29 75.9 35000 2000 0.6193 5.30559 1 0 0 0 0 0 10.8 2.3 4.7 2.4 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596294 NC_006393 Plasmid pNG500 0.4552 131 132678 1012.8 0.715318 cir 0 0 0 9.7 11.1 0.2 0 0 83 57.8 37000 86000 0.9044 5.17604 0 0 0 0 0 0 5 2 6 2.3 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596295 NC_006394 Plasmid pNG600 0.4167 166 155300 935.5 0.884179 cir 0 0 0 0.9 0.8 0.4 1 1 107 55.1 132000 81000 0.9923 5.3347 0 0 0 0 0 0 6.1 2.3 3.9 2.7 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 AY596296 NC_006395 Plasmid pNG700 0.4088 362 410554 1134.1 0.837583 cir 0 0 0 0.6 0.1 0.4 0 0 294 23.1 356000 173000 0.6084 5.40533 3 2 0 0 2 0 5 2.1 3.7 2.9 Archaea Euryarchaeota 106 Halobacterium salinarum R1 AM774415 NC_010364 Chromosome 0.3199 2136 2000962 936.8 0.911203 cir 1 1 1 1.7 1.3 1.3 47 47 1116000 1795000 0.338 5.82957 6 8 0 0 8 0 16.8 5.9 11.3 7.3 Archaea Euryarchaeota 106 Halobacterium salinarum R1 AM774416 NC_010366 Plasmid PHS1 0.4255 174 147625 848.4 0.83809 cir 0 0 0 15.7 6 0.4 0 0 104000 2000 0.76 5.29897 1 1 0 0 1 0 5.1 2.8 5.4 2.7 Archaea Euryarchaeota 106 Halobacterium salinarum R1 AM774417 NC_010369 Plasmid PHS2 0.4141 230 194963 847.7 0.804153 cir 0 0 0 9.1 9.8 0.5 0 0 110000 173000 0.7884 5.35667 0 1 0 0 1 0 6.7 2.4 6.2 3.3 Archaea Euryarchaeota 106 Halobacterium salinarum R1 AM774418 NC_010368 Plasmid PHS3 0.4021 306 284332 929.2 0.848287 cir 0 0 0 5.2 5.6 0.6 0 0 8000 166000 0.7372 5.42073 0 0 0 0 0 0 6.5 2.7 5.4 3.1 Archaea Euryarchaeota 106 Halobacterium salinarum R1 AM774419 NC_010367 Plasmid PHS4 0.4209 40 40894 1022.4 0.833105 cir 0 0 0 15.2 0 0.5 0 0 27000 8000 0.7678 5.30092 0 0 0 0 0 0 5 3.6 4.4 3.1 Archaea Euryarchaeota 217 Halobacterium sp. NRC-1 AE004437 NC_002607 Chromosome 0.3209 2058 2014239 978.7 0.87562 cir 1 1 1 1.9 1.4 1.3 47 47 1625 26.6 1124000 1806000 0.3419 5.82464 6 8 0 0 8 0 16.7 5.9 11.3 7.3 Archaea Euryarchaeota 217 Halobacterium sp. NRC-1 AE004438 NC_002608 Plasmid pNRC200 0.4078 371 365425 985 0.768169 cir 0 0 0 14.7 26 0.6 0 0 254 46.1 14000 124000 0.7613 5.39213 1 1 0 0 1 0 6.5 2.8 6.5 3.2 Archaea Euryarchaeota 217 Halobacterium sp. NRC-1 AF016485 NC_001869 Plasmid pNRC100 0.4209 176 191346 1087.2 0.718625 cir 0 0 0 16.7 49.2 0.4 0 0 166 6 18000 112000 0.7709 5.31928 1 1 0 0 1 0 5.6 3 6.8 3 Archaea Euryarchaeota 17185 Haloquadratum walsbyi DSM 16790 AM180088 NC_008212 Chromosome 0.5214 2823 3132494 1109.6 0.764461 cir 0 2 2 5.4 4.9 0.6 44 45 2024 39.5 1408000 2518000 0.6616 5.00911 4 5 0 0 5 0 4.1 1.5 2.4 2.1 Archaea Euryarchaeota 17185 Haloquadratum walsbyi DSM 16790 AM180089 NC_008213 Plasmid PL47 0.5233 39 46867 1201.7 0.691382 cir 0 0 0 3.4 0 0.4 0 0 24 62.5 0 15000 1.308 4.92605 0 0 0 0 0 0 4.6 1.2 2.9 1.7 Bacteria Gammaproteobacteria 15767 Halorhodospira halophila SL1 CP000544 NC_008789 Chromosome 0.3202 2407 2678452 1112.8 0.914799 cir 2 2 2 2.2 0.7 0.9 46 46 2166 11.1 273000 1340000 0.7269 5.69874 33 19 0 0 19 0 11.4 5.8 7.6 6.8 Archaea Euryarchaeota 18455 Halorubrum lacusprofundi ATCC 49239 CP001365 NC_012029 Chromosome 1 0.3328 2711 2735295 1009 0.866031 cir 2 2 2 2.8 2.3 1.4 50 50 2571000 855000 0.7811 5.72084 8 13 0 0 13 0 16.3 4.6 11 5.6 Archaea Euryarchaeota 18455 Halorubrum lacusprofundi ATCC 49239 CP001367 NC_012030 Plasmid pHLAC01 0.4514 376 431338 1147.2 0.73974 cir 0 0 0 13.9 9 0.4 0 0 9000 150000 0.995 5.19444 1 4 0 0 4 0 7.7 1.7 5.7 2.7 Archaea Euryarchaeota 18455 Halorubrum lacusprofundi ATCC 49239 CP001366 NC_012028 Chromosome 2 0.4286 473 525943 1111.9 0.791314 cir 1 1 1 13.9 12.7 0.4 1 1 288000 114000 0.8528 5.2945 0 1 0 0 1 0 5.1 2.2 5.2 2.8 Bacteria Firmicutes 16377 Halothermothrix orenii H 168 CP001098 NC_011899 Chromosome 0.6212 2342 2578146 1100.8 0.864856 cir 3 4 4 2.8 1.9 0.5 56 56 0 1237000 3.7387 4.45116 15 4 0 2 6 0 8 4.1 5.4 6.1 Bacteria Epsilonproteobacteria 17251 Helicobacter acinonychis str. Sheeba AM260522 NC_008229 Chromosome 0.6182 1612 1553927 964 0.895567 cir 2 2 2 2.9 2.3 0.6 36 36 1297 24.3 3000 749000 2.6865 4.49627 7 2 0 0 2 0 8.6 3.5 5.1 5.6 Bacteria Epsilonproteobacteria 17251 Helicobacter acinonychis str. Sheeba AM260523 NC_008230 Plasmid pHac1 0.6545 6 3661 610.2 0.713739 cir 0 0 0 2.6 0 0 0 0 2 200 0 2000 3.4417 4.32505 0 0 0 0 0 0 17.2 2.6 8.2 11.3 Bacteria Epsilonproteobacteria 185 Helicobacter hepaticus ATCC 51449 AE017125 NC_004917 Chromosome 0.6407 1875 1799146 959.5 0.930329 cir 1 1 1 1.4 0.8 0.4 37 37 1547 21.2 1110000 1777000 2.1705 4.458 9 2 0 0 2 0 7.5 3.3 4.8 4.6 Bacteria Epsilonproteobacteria 233 Helicobacter pylori 26695 AE000511 NC_000915 Chromosome 0.6112 1566 1667867 1065 0.893215 cir 3 2 2 3.7 3.5 0.7 36 36 1364 14.8 1655000 768000 2.8426 4.51767 7 2 0 0 2 0 9 3.4 5 5.5 Bacteria Epsilonproteobacteria 31341 Helicobacter pylori G27 CP001173 NC_011333 Chromosome 0.6111 1493 1652982 1107.2 0.866163 cir 3 2 2 4 1.6 0.7 36 36 1639000 783000 2.8112 4.51934 7 2 0 0 2 0 9.1 3.5 4.9 5.4 Bacteria Epsilonproteobacteria 31341 Helicobacter pylori G27 CP001174 NC_011334 Plasmid pHPG27 0.6513 11 10031 911.9 0.733327 cir 0 0 0 3.6 0 0.3 0 0 9000 5000 1.9539 4.38027 0 0 0 0 0 0 13 3.8 5.7 10.6 Bacteria Epsilonproteobacteria 16183 Helicobacter pylori HPAG1 CP000241 NC_008086 Chromosome 0.6092 1536 1596366 1039.3 0.915687 cir 2 2 2 4.1 1.1 0.7 36 36 1349 13.9 1438000 735000 2.8368 4.52717 7 2 0 0 2 0 8.9 3.5 5 5.4 Bacteria Epsilonproteobacteria 16183 Helicobacter pylori HPAG1 CP000242 NC_008087 Plasmid pHPAG1 0.6361 8 9370 1171.2 0.710993 cir 0 0 0 40.9 0 0.3 0 0 4 100 8000 5000 1.4301 4.41585 0 0 0 0 0 0 12.6 2.1 4 12.1 Bacteria Epsilonproteobacteria 234 Helicobacter pylori J99 AE001439 NC_000921 Chromosome 0.6081 1491 1643831 1102.5 0.901781 cir 2 2 2 3.7 1.5 0.7 0 36 1355 10 1557000 685000 2.7628 4.53066 8 2 0 0 2 0 9 3.4 4.8 5.4 Bacteria Epsilonproteobacteria 32291 Helicobacter pylori P12 CP001217 NC_011498 Chromosome 0.6119 1567 1673813 1068.2 0.893789 cir 2 2 2 3.1 1.7 0.7 36 36 1588000 765000 2.8066 4.51455 7 2 0 0 2 0 9 3.5 4.9 5.5 Bacteria Epsilonproteobacteria 32291 Helicobacter pylori P12 CP001218 NC_011499 Plasmid HPP12 0.6495 11 10225 929.5 0.728313 cir 0 0 0 14.2 0 0 0 0 5000 2000 2.132 4.37367 0 0 0 0 0 0 15 3.5 5 9.5 Bacteria Epsilonproteobacteria 29045 Helicobacter pylori Shi470 CP001072 NC_010698 Chromosome 0.6109 1569 1608548 1025.2 0.888819 cir 2 2 2 3.5 1.2 0.8 36 36 1526000 634000 2.7801 4.51979 7 2 0 0 2 0 8.8 3.4 4.9 5.5 Bacteria Firmicutes 13427 Heliobacterium modesticaldum Ice1 CP000930 NC_010337 Chromosome 0.4302 3000 3075407 1025.1 0.859432 cir 10 10 10 9.7 9.3 0.5 104 109 1467000 2390000 2.6229 5.25209 33 20 0 1 21 0 6 2.3 3.8 3 Bacteria Betaproteobacteria 13467 Herminiimonas arsenicoxydans CU207211 NC_009138 Chromosome 0.4571 3333 3424307 1027.4 0.881315 cir 2 2 2 2.2 1.3 0.4 45 45 2702 23.4 3375000 1601000 0.8512 5.30533 45 22 0 3 25 0 4.5 1.8 3.4 2.3 Bacteria Chloroflexi 16523 Herpetosiphon aurantiacus ATCC 23779 CP000875 NC_009972 Chromosome 0.4928 4976 6346587 1275.4 0.877978 cir 5 5 5 5.2 2.4 0.5 51 51 4744000 2578000 0.4373 5.12984 100 61 2 13 76 0 5.6 1.9 3.9 2.5 Bacteria Chloroflexi 16523 Herpetosiphon aurantiacus ATCC 23779 CP000876 NC_009973 Plasmid pHAU01 0.4632 231 339639 1470.3 0.801483 cir 0 0 0 10.3 3 0.4 0 0 153000 51000 0.7219 5.25464 2 0 0 1 1 0 6.9 2.4 3.7 2.5 Bacteria Chloroflexi 16523 Herpetosiphon aurantiacus ATCC 23779 CP000877 NC_009974 Plasmid pHAU02 0.4693 71 99204 1397.2 0.814866 cir 0 0 0 7.1 0 0.5 0 0 26000 56000 0.9475 5.21458 0 0 0 0 0 0 4.1 2.7 3.7 2.6 Bacteria Aquificae 18891 Hydrogenobaculum sp. Y04AAS1 CP001130 NC_011126 Chromosome 0.6515 1629 1559514 957.3 0.948254 cir 2 2 2 3 2.3 0.6 45 45 1191000 443000 3.1077 4.31511 8 4 0 0 4 0 9.5 4.2 5.2 6.8 Archaea Crenarchaeota 208 Hyperthermus butylicus DSM 5456 CP000493 NC_008818 Chromosome 0.4626 1602 1667163 1040.7 0.80759 cir 0 1 1 0.3 0.2 0.4 46 46 1316 21.7 673000 1632000 1.7781 4.9673 0 0 0 0 0 0 4.6 1.6 2.4 2.4 Bacteria Alphaproteobacteria 15721 Hyphomonas neptunium ATCC 15444 CP000158 NC_008358 Chromosome 0.3807 3505 3705021 1057.1 0.902247 cir 1 1 1 1.1 1 0.5 43 43 2936 19.4 3625000 1856000 1.0229 5.50717 29 18 1 1 22 2 6.8 2.8 4 3.7 Bacteria Gammaproteobacteria 10790 Idiomarina loihiensis L2TR AE017340 NC_006512 Chromosome 0.5296 2628 2839318 1080.4 0.920149 cir 4 4 4 2.3 1.3 0.3 56 56 2381 10.4 2759000 772000 0.957 4.89865 32 13 0 2 15 0 3.2 1.7 2.4 2.3 Archaea Crenarchaeota 13914 Ignicoccus hospitalis KIN4/I CP000816 NC_009776 Chromosome 0.4348 1434 1297538 904.8 0.919756 cir 0 1 1 0.8 0.8 0.5 44 46 19000 925000 4.6781 4.99914 0 0 0 0 0 0 6.7 2.3 2.9 3.7 Bacteria Alphaproteobacteria 12733 Jannaschia sp. CCS1 CP000264 NC_007802 Chromosome 0.3767 4212 4317977 1025.2 0.90594 cir 1 1 1 0.8 0.5 0.4 42 42 3501 20.3 185000 2256000 0.7153 5.57533 22 14 1 0 16 1 6.1 2.7 3.3 3.4 Bacteria Alphaproteobacteria 12733 Jannaschia sp. CCS1 CP000265 NC_007801 Plasmid1 0.4219 71 86072 1212.3 0.899282 cir 0 0 0 0 0 0.3 0 0 66 7.6 59000 18000 0.6634 5.3693 0 0 0 0 0 0 3.9 2.4 2.8 2.3 Bacteria Betaproteobacteria 16549 Janthinobacterium sp. Marseille CP000269 NC_009659 Chromosome 0.4577 3697 4110251 1111.8 0.891516 cir 2 2 2 2.9 0.8 0.3 46 46 3251 13.7 4055000 1977000 0.7833 5.28885 62 26 0 4 30 0 4.4 1.9 3 2.3 Bacteria Actinobacteria 10689 Kineococcus radiotolerans SRS30216 CP000752 NC_009660 Plasmid pKRAD02 0.2774 17 12917 759.8 0.757606 cir 0 0 0 0 1 1.2 0 0 6 183.3 12000 8000 0.2942 5.93397 0 0 0 0 0 0 20.7 13 17.1 13.2 Bacteria Actinobacteria 10689 Kineococcus radiotolerans SRS30216 CP000750 NC_009664 Chromosome 0.2556 4480 4761183 1062.8 0.905632 lin 4 4 4 3.3 2.1 2.1 49 49 3681 21.7 0.613 5.97641 38 13 1 15 29 0 24.6 13.6 17.1 15.8 Bacteria Actinobacteria 10689 Kineococcus radiotolerans SRS30216 CP000751 NC_009806 Plasmid pKRAD01 0.3057 184 182572 992.2 0.836136 lin 0 0 0 2.3 0.4 2.4 0 0 0.6748 5.7594 1 0 0 1 1 0 14.7 6.3 8.6 9.2 Bacteria Gammaproteobacteria 28471 Klebsiella pneumoniae 342 CP000964 NC_011283 Chromosome 0.4271 5425 5641239 1039.9 0.878231 cir 9 8 8 3.6 2.2 0.4 88 88 5607000 2721000 1.1518 5.33839 38 24 0 2 26 0 5.8 2.5 4.1 3 Bacteria Gammaproteobacteria 28471 Klebsiella pneumoniae 342 CP000965 NC_011282 Plasmid pKP187 0.5285 230 187922 817.1 0.742106 cir 0 0 0 2.4 1.8 0.2 0 0 7000 133000 1.8343 4.90442 0 0 0 0 0 0 4 1.6 3 2.3 Bacteria Gammaproteobacteria 28471 Klebsiella pneumoniae 342 CP000966 NC_011281 Plasmid pKP91 0.4891 113 91096 806.2 0.786774 cir 0 0 0 2.3 4.5 0.2 0 0 62000 13000 1.7805 5.06696 0 0 0 0 0 0 3.6 1.6 3.3 1.9 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 CP000647 NC_009648 Chromosome 0.4252 4776 5315120 1112.9 0.85963 cir 9 8 8 3 2.6 0.5 86 86 4500 6.1 4542000 1860000 1.1311 5.34325 36 24 0 2 26 0 6 2.6 4.2 3.1 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 CP000648 NC_009649 Plasmid pKPN3 0.4831 178 175879 988.1 0.758453 cir 0 0 0 7.3 3.5 0.2 0 0 137 29.9 123000 6000 1.6369 5.08786 2 1 0 0 1 0 4.9 2.1 3.8 2.1 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 CP000649 NC_009650 Plasmid pKPN4 0.4656 123 107576 874.6 0.828512 cir 0 0 0 5.3 0 0.2 0 0 90 36.7 52000 9000 1.7457 5.15689 0 0 0 0 0 0 4.7 2 3.7 2.6 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 CP000650 NC_009651 Plasmid pKPN5 0.4618 98 88582 903.9 0.76581 cir 0 0 0 11.6 10.6 0.2 0 0 76 28.9 84000 49000 1.5263 5.18091 0 0 0 0 0 0 4.9 2.3 3.2 2.2 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 CP000651 NC_009652 Plasmid pKPN6 0.5858 5 4259 851.8 0.642404 cir 0 0 0 0 0 0.6 0 0 2000 0 3.8272 4.61491 0 0 0 0 0 0 7.2 5.3 9.5 3.5 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 CP000652 NC_009653 Plasmid pKPN7 0.5434 5 3478 695.6 0.491949 cir 0 0 0 0 0 0 0 0 0 2000 2.6164 4.78605 0 0 0 0 0 0 9.1 3.7 10.5 7.5 Bacteria Actinobacteria 27833 Kocuria rhizophila DC2201 AP009152 NC_010617 Chromosome 0.2884 2357 2697540 1144.5 0.883487 cir 3 3 3 1.5 0.3 1 46 46 1405000 568000 0.5866 5.85889 12 4 1 6 11 0 16.6 8.7 10.4 9.8 Bacteria Firmicutes 82 Lactobacillus acidophilus NCFM CP000033 NC_006814 Chromosome 0.6529 1862 1993561 1070.7 0.880889 cir 4 4 3 3.1 3 0.5 61 61 1590 17.1 0 1105000 1.8379 4.42698 6 6 0 0 6 0 7.9 4.2 6.7 5.7 Bacteria Firmicutes 404 Lactobacillus brevis ATCC 367 CP000416 NC_008497 Chromosome 0.5378 2185 2291220 1048.6 0.842161 cir 5 5 5 2.9 2.9 0.2 65 65 1798 21.5 2000 844000 0.8694 4.91007 9 7 0 0 7 0 3.4 1.8 3.4 2.4 Bacteria Firmicutes 404 Lactobacillus brevis ATCC 367 CP000417 NC_008498 Plasmid 1 0.6136 11 13413 1219.4 0.639902 cir 0 0 0 0 0 0.5 0 0 9 22.2 4000 13000 1.6849 4.5611 0 0 0 0 0 0 7.4 3.3 6.5 6.5 Bacteria Firmicutes 404 Lactobacillus brevis ATCC 367 CP000418 NC_008499 Plasmid 2 0.6149 22 35595 1618 0.532631 cir 0 0 0 6.8 0.3 0.1 0 0 14 57.1 35000 24000 1.194 4.5612 0 0 0 0 0 0 5.1 3.3 5.1 3.4 Bacteria Firmicutes 402 Lactobacillus casei ATCC 334 CP000424 NC_008502 Plasmid 1 0.5784 20 29061 1453 0.585389 cir 0 0 0 10.2 12.6 0.1 0 0 14 42.9 5000 15000 1.4349 4.74154 0 0 0 0 0 0 6.4 2.7 4.8 4.5 Bacteria Firmicutes 402 Lactobacillus casei ATCC 334 CP000423 NC_008526 Chromosome 0.5338 2751 2895264 1052.4 0.822624 cir 5 5 5 6.9 6.5 0.2 59 59 2193 25.4 3000 1410000 0.9742 4.95146 16 11 0 2 13 0 3.5 1.7 3.9 2.2 Bacteria Firmicutes 30359 Lactobacillus casei BL23 FM177140 NC_010999 Chromosome 0.5366 3044 3079196 1011.6 0.848398 cir 5 5 5 5.7 3.8 0.2 0 60 2000 1579000 0.9712 4.94013 16 11 0 2 13 0 3.5 1.8 3.9 2.2 Bacteria Firmicutes 16871 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 CR954253 NC_008054 Chromosome 0.5028 2096 1864998 889.8 0.854518 cir 9 9 9 8.1 9 0.5 95 95 1259 66.5 1810000 911000 2.4476 4.89354 5 6 0 0 6 0 5.8 2.3 4 2.9 Bacteria Firmicutes 403 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 CP000412 NC_008529 Chromosome 0.5031 1721 1856951 1079 0.770223 cir 9 9 9 6.8 9.7 0.5 98 98 1330 29.4 1813000 893000 2.451 4.89313 6 6 0 0 6 0 5.8 2.4 3.9 3 Bacteria Firmicutes 18979 Lactobacillus fermentum IFO 3956 AP008937 NC_010610 Chromosome 0.4853 1843 2098685 1138.7 0.803089 cir 5 5 5 9.7 9.5 0.3 54 57 1000 1088000 1.6542 5.0303 5 4 0 1 5 0 4.8 2.2 3.8 2.7 Bacteria Firmicutes 84 Lactobacillus gasseri ATCC 33323 CP000413 NC_008530 Chromosome 0.6474 1755 1894360 1079.4 0.882293 cir 6 6 6 7.6 2.2 0.5 78 78 1452 20.9 0 1005000 2.1026 4.40558 5 5 0 0 5 0 7.2 4 6 5.4 Bacteria Firmicutes 17811 Lactobacillus helveticus DPC 4571 CP000517 NC_010080 Chromosome 0.6292 1610 2080931 1292.5 0.736726 cir 4 4 4 15.3 13.6 0.4 61 61 2080000 1226000 1.8398 4.5033 4 4 0 0 4 0 6.4 3.4 5.6 4.5 Bacteria Firmicutes 9638 Lactobacillus johnsonii NCC 533 AE017198 NC_005362 Chromosome 0.6539 1821 1992676 1094.3 0.891572 cir 6 6 6 4.9 3.3 0.5 79 79 1573 15.8 0 1100000 2.2478 4.37489 7 6 0 1 7 0 8.1 4.3 6.5 5.6 Bacteria Firmicutes 356 Lactobacillus plantarum WCFS1 AL935263 NC_004567 Chromosome 0.5553 3051 3308274 1084.3 0.843915 cir 6 5 5 3 3.4 0.3 70 72 2514 21.4 3000 1657000 0.5905 4.87275 10 6 0 2 8 0 4.1 2.1 3.8 2.7 Bacteria Firmicutes 356 Lactobacillus plantarum WCFS1 CR377164 NC_006375 Plasmid pWCFS101 0.6051 3 1917 639 0.672926 cir 0 0 0 4.9 0 1.3 0 0 1 200 0 0 1.0433 4.61675 0 0 0 0 0 0 6.9 0 17.8 3.2 Bacteria Firmicutes 356 Lactobacillus plantarum WCFS1 CR377165 NC_006376 Plasmid pWCFS102 0.6567 4 2365 591.2 0.551797 cir 0 0 0 0 0 0 0 0 1 300 2000 1000 3.0444 4.37597 0 0 0 0 0 0 13.2 8.4 15.6 16.2 Bacteria Firmicutes 356 Lactobacillus plantarum WCFS1 CR377166 NC_006377 Plasmid pWCFS103 0.5917 43 36069 838.8 0.866728 cir 0 0 0 0.4 0 0.1 0 0 26 65.4 33000 14000 1.4445 4.66575 0 0 0 0 0 0 4.2 2.8 4.1 3.5 Bacteria Firmicutes 15766 Lactobacillus reuteri F275 CP000705 NC_009513 Chromosome 0.6113 1900 1999618 1052.4 0.852057 cir 6 6 6 6.1 8.1 0.4 68 68 1619 17.4 3000 1024000 1.7045 4.59358 9 5 0 0 5 0 5.3 3 4.9 3.7 Bacteria Firmicutes 19011 Lactobacillus reuteri JCM 1112 AP007281 NC_010609 Chromosome 0.6112 1820 2039414 1120.6 0.834289 cir 6 6 6 6.7 8.4 0.4 63 65 0 1033000 1.7021 4.59357 10 5 0 1 6 0 5.3 3 4.9 3.7 Bacteria Firmicutes 13435 Lactobacillus sakei subsp. sakei 23K CR936503 NC_007576 Chromosome 0.5874 1885 1884661 999.8 0.868017 cir 7 7 7 3.7 3.4 0.4 70 63 1596 18.1 0 922000 1.0344 4.73478 9 6 0 2 8 0 4.8 2.3 4.2 3.4 Bacteria Firmicutes 13280 Lactobacillus salivarius UCC118 CP000233 NC_007929 Chromosome 0.6706 1717 1827111 1064.1 0.840292 cir 7 7 7 6.1 4.2 0.5 78 78 1445 18.8 0 902000 2.1381 4.33759 6 5 0 1 6 0 9 4.6 6.5 6.8 Bacteria Firmicutes 13280 Lactobacillus salivarius UCC118 AF488831 NC_006529 Plasmid pSF118-20 0.6089 27 20417 756.2 0.750551 cir 0 0 0 0.8 0 0.6 0 0 12 125 7000 0 1.5281 4.56445 0 0 0 0 0 0 7.3 2.9 7.2 4.9 Bacteria Firmicutes 13280 Lactobacillus salivarius UCC118 AF488832 NC_006530 Plasmid pSF118-44 0.6042 51 44013 863 0.657442 cir 0 0 0 7.3 0.3 0.4 0 0 33 54.5 17000 2000 1.5473 4.61373 0 0 0 0 0 0 5.8 3.2 5.7 4.5 Bacteria Firmicutes 13280 Lactobacillus salivarius UCC118 CP000234 NC_007930 Plasmid pMP118 0.6791 222 242436 1092.1 0.754793 cir 0 0 0 2.3 1.4 0.4 0 0 148 50 5000 85000 2.2851 4.30232 1 0 0 1 1 0 9.9 5.1 7.7 7.5 Bacteria Firmicutes 18797 Lactococcus lactis subsp. cremoris MG1363 AM406671 NC_009004 Chromosome 0.6425 2516 2529478 1005.4 0.855454 cir 7 6 6 6.2 6.6 0.5 62 64 1959 28.4 2529000 1239000 2.5591 4.43972 7 5 0 1 6 0 7.7 4.4 6.4 5.6 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 CP000426 NC_008503 Plasmid 1 0.6563 10 14041 1404.1 0.640197 cir 0 0 0 13.3 0 0 0 0 8 25 12000 3000 4.0311 4.32905 0 0 0 0 0 0 10.1 6.3 7.7 7.3 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 CP000425 NC_008527 Chromosome 0.6414 2384 2438589 1022.9 0.811221 cir 7 6 6 7.2 7.7 0.5 61 61 1836 29.8 1000 1211000 2.4894 4.44444 8 6 0 1 7 0 7.7 4.2 6.4 5.4 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 CP000427 NC_008504 Plasmid 2 0.6956 6 9554 1592.3 0.388947 cir 0 0 0 2 0 0.3 0 0 3 100 4000 9000 2.9098 4.22836 0 0 0 0 0 0 13.2 11.3 14.4 8.1 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 CP000428 NC_008505 Plasmid 3 0.6459 61 74750 1225.4 0.669993 cir 0 0 0 12.3 12.2 0.5 1 1 42 45.2 62000 21000 2.6555 4.42225 1 1 0 0 1 0 8.5 5.4 8.3 5.9 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 CP000429 NC_008506 Plasmid 4 0.6516 35 47208 1348.8 0.721784 cir 0 0 0 10.6 11.4 0.4 0 0 32 9.4 23000 38000 2.8915 4.38949 0 0 0 0 0 0 7.6 5.2 6.3 5.8 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 CP000430 NC_008507 Plasmid 5 0.6645 8 14206 1775.8 0.721315 cir 0 0 0 1.5 0 0.2 0 0 6 33.3 12000 5000 2.689 4.35215 0 0 0 0 0 0 11.8 3.9 5.7 5.2 Bacteria Firmicutes 72 Lactococcus lactis subsp. lactis Il1403 AE005176 NC_002662 Chromosome 0.6467 2266 2365589 1043.9 0.845216 cir 7 6 6 4.7 5.6 0.5 0 62 1836 23.4 0 1265000 2.5254 4.42833 7 5 0 1 6 0 8.3 4.6 6.8 5.8 Bacteria Deltaproteobacteria 183 Lawsonia intracellularis PHE/MN1-00 AM180252 NC_008011 Chromosome 0.6672 1187 1457619 1228 0.839267 cir 2 2 2 0.3 0.8 0.6 0 44 1106 7.3 978000 218000 2.7424 4.31131 8 3 0 0 3 0 8.9 5.7 7.1 7.4 Bacteria Deltaproteobacteria 183 Lawsonia intracellularis PHE/MN1-00 AM180253 NC_008012 Plasmid 1 0.7095 29 27048 932.7 0.823832 cir 0 0 0 2.6 0.2 0.5 0 0 21 38.1 25000 8000 3.7563 4.19722 0 0 0 0 0 0 11.6 9.5 12.9 12.5 Bacteria Deltaproteobacteria 183 Lawsonia intracellularis PHE/MN1-00 AM180254 NC_008013 Plasmid 2 0.7077 24 39794 1658.1 0.682465 cir 0 0 0 2.4 0.6 1.1 0 0 21 14.3 5000 19000 3.4327 4.18114 0 0 0 0 0 0 14.6 10.6 12.1 13 Bacteria Deltaproteobacteria 183 Lawsonia intracellularis PHE/MN1-00 AM180255 NC_008014 Plasmid 3 0.6709 104 194553 1870.7 0.796652 cir 0 0 0 4 0 0.8 0 0 98 6.1 120000 15000 4.3844 4.28779 0 0 0 0 0 0 13.9 8 9.4 10.4 Bacteria Gammaproteobacteria 17491 Legionella pneumophila str. Corby CP000675 NC_009494 Chromosome 0.6152 3206 3576470 1115.6 0.869113 cir 3 3 3 4.7 3.8 0.2 44 44 2700 18.7 3568000 1070000 2.009 4.56888 11 9 0 0 9 0 4.7 2.7 4 3.5 Bacteria Gammaproteobacteria 13126 Legionella pneumophila str. Lens CR628337 NC_006369 Chromosome 0.6158 2947 3345687 1135.3 0.880618 lin 3 3 3 2.8 1.8 0.2 43 43 2546 15.8 2.0005 4.56606 11 9 0 0 9 0 4.7 2.8 4 3.5 Bacteria Gammaproteobacteria 13126 Legionella pneumophila str. Lens CR628339 NC_006366 Plasmid pLPL 0.6161 57 59832 1049.7 0.837779 lin 0 0 0 0.3 0 0.4 0 0 41 39 2.1794 4.56596 0 0 0 0 0 0 8.4 3.7 4.4 3.6 Bacteria Gammaproteobacteria 13127 Legionella pneumophila str. Paris CR628336 NC_006368 Chromosome 0.6163 3082 3503610 1136.8 0.879209 lin 3 3 3 3.7 2.2 0.3 43 43 2667 15.6 1.9956 4.56359 11 9 0 0 9 0 4.7 2.8 4 3.5 Bacteria Gammaproteobacteria 13127 Legionella pneumophila str. Paris CR628338 NC_006365 Plasmid pLPP 0.6256 142 131885 928.8 0.920044 lin 0 0 0 0.1 0 0.2 0 0 104 36.5 2.0609 4.53936 1 1 0 0 1 0 5 2.7 3.8 3.4 Bacteria Gammaproteobacteria 22 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 AE017354 NC_002942 Chromosome 0.6173 2942 3397754 1154.9 0.882533 cir 3 3 3 2.5 1.6 0.3 43 43 2631 11.8 0 1692000 2.0061 4.55977 11 9 0 0 9 0 4.7 2.7 4 3.5 Bacteria Actinobacteria 212 Leifsonia xyli subsp. xyli str. CTCB07 AE016822 NC_006087 Chromosome 0.3232 2030 2584158 1273 0.700891 cir 1 1 1 4.5 5 0.8 45 45 1631 24.5 2573000 1329000 0.9342 5.72347 21 6 1 5 12 0 11.2 5.7 7.7 6.9 Bacteria Spirochaetes 16153 Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) CP000777 NC_010842 Chromosome I 0.6111 3277 3603977 1099.8 0.92164 cir 2 2 2 1.6 0.5 0.3 35 35 1000 1806000 4.1605 4.57571 46 34 5 0 39 0 5.8 3 4.4 4.1 Bacteria Spirochaetes 16153 Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) CP000779 NC_010846 Plasmid p74 0.6253 57 74117 1300.3 0.910129 cir 0 0 0 0.3 0 0.2 0 0 3000 35000 3.9087 4.51944 1 1 1 0 2 0 6.1 2.8 5.4 4.2 Bacteria Spirochaetes 16153 Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) CP000778 NC_010845 Chromosome II 0.6073 266 277995 1045.1 0.927081 cir 0 0 0 0.1 0 0.3 0 0 4000 141000 4.1857 4.58726 3 3 0 0 3 0 5.3 2.7 4.3 4 Bacteria Spirochaetes 20133 Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) CP000788 NC_010844 Plasmid p74 0.6253 59 74116 1256.2 0.915848 cir 0 0 0 0.3 0 0.2 0 0 4000 34000 3.9087 4.51955 1 1 1 0 2 0 6.1 2.8 5.4 4.2 Bacteria Spirochaetes 20133 Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) CP000786 NC_010602 Chromosome I 0.6111 3391 3599677 1061.5 0.928691 cir 2 2 2 1.5 0.3 0.3 35 35 3598000 1800000 4.1599 4.57589 47 34 5 0 39 0 5.8 3 4.4 4.1 Bacteria Spirochaetes 20133 Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) CP000787 NC_010843 Chromosome II 0.6073 276 277655 1006 0.937422 cir 0 0 0 0.1 0 0.3 0 0 4000 141000 4.185 4.58736 3 3 0 0 3 0 5.3 2.7 4.2 4 Bacteria Spirochaetes 16148 Leptospira borgpetersenii serovar Hardjo-bovis JB197 CP000350 NC_008510 Chromosome 1 0.5977 2645 3576473 1352.2 0.727522 cir 1 2 2 9.5 8.5 0.3 37 37 2308 14.6 44000 1661000 4.7102 4.5758 28 16 4 1 21 0 5.6 2.9 4.8 3.7 Bacteria Spirochaetes 16148 Leptospira borgpetersenii serovar Hardjo-bovis JB197 CP000351 NC_008511 Chromosome 2 0.5957 235 299762 1275.6 0.746929 cir 0 0 0 4.3 4.3 0.2 0 0 201 16.9 4000 162000 4.8532 4.5806 2 2 0 0 2 0 5.2 2.6 4.7 3.9 Bacteria Spirochaetes 16146 Leptospira borgpetersenii serovar Hardjo-bovis L550 CP000348 NC_008508 Chromosome 1 0.5977 2703 3614446 1337.2 0.733724 cir 1 2 2 10.8 8.5 0.3 37 37 2373 13.9 163000 1887000 4.7177 4.57578 31 18 4 1 23 0 5.7 2.9 4.8 3.7 Bacteria Spirochaetes 16146 Leptospira borgpetersenii serovar Hardjo-bovis L550 CP000349 NC_008509 Chromosome 2 0.5984 242 317336 1311.3 0.736475 cir 0 0 0 4.7 4.6 0.2 0 0 210 15.2 2000 176000 4.753 4.57269 2 2 0 0 2 0 5.5 2.8 4.8 4.1 Bacteria Spirochaetes 10687 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 AE016823 NC_005823 Chromosome I 0.6495 3394 4277185 1260.2 0.747461 cir 1 2 2 8.8 7.5 0.3 37 37 2663 27.5 2000 2109000 4.0547 4.3692 37 22 8 2 32 0 9.4 5.5 7.7 6.7 Bacteria Spirochaetes 10687 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 AE016824 NC_005824 Chromosome II 0.6502 264 350181 1326.4 0.744298 cir 0 0 0 2.7 2.5 0.3 0 0 222 18.9 349000 203000 4.2292 4.364 3 3 0 0 3 0 8.4 5.5 7.2 6.8 Bacteria Spirochaetes 293 Leptospira interrogans serovar Lai str. 56601 AE010300 NC_004342 Chromosome I 0.6499 4358 4332241 994.1 0.778651 cir 1 2 1 9.5 8.1 0.3 37 37 2756 58.1 4332000 2143000 4.0589 4.36749 36 22 9 2 33 0 9.4 5.5 7.7 6.7 Bacteria Spirochaetes 293 Leptospira interrogans serovar Lai str. 56601 AE010301 NC_004343 Chromosome II 0.6486 367 358943 978 0.795675 cir 0 0 0 4.2 4.8 0.3 0 0 241 52.3 357000 205000 4.2464 4.36928 3 3 0 0 3 0 8.1 5.4 7.1 6.6 Bacteria Betaproteobacteria 20039 Leptothrix cholodnii SP-6 CP001013 NC_010524 Chromosome 0.311 4363 4909403 1125.2 0.918612 cir 2 2 2 3.7 2.7 1.2 50 50 4726000 2069000 0.272 5.84538 90 57 0 7 64 0 16.2 8.5 10.6 9.3 Bacteria Firmicutes 16062 Leuconostoc citreum KM20 DQ489737 NC_010466 Plasmid pLCK2 0.6203 36 31463 874 0.738773 cir 0 0 0 6.5 4 0.6 0 0 16000 2000 1.443 4.60639 0 0 0 0 0 0 5.4 3.4 5.3 4.7 Bacteria Firmicutes 16062 Leuconostoc citreum KM20 DQ489736 NC_010471 Chromosome 0.6101 1705 1796284 1053.5 0.891639 cir 4 4 4 2.3 2.7 0.3 70 70 0 915000 0.9163 4.68271 6 5 0 0 5 0 4.9 2.7 4.2 3.5 Bacteria Firmicutes 16062 Leuconostoc citreum KM20 DQ489738 NC_010467 Plasmid pLCK3 0.67 20 17971 898.5 0.703522 cir 0 0 0 1.1 0 0.1 0 0 8000 14000 2.6042 4.37974 0 0 0 0 0 0 9.5 4.5 8 6.4 Bacteria Firmicutes 16062 Leuconostoc citreum KM20 DQ489739 NC_010469 Plasmid pLCK4 0.6309 13 12183 937.2 0.797833 cir 0 0 0 1.9 0 0.4 0 0 8000 0 1.9125 4.52039 0 0 0 0 0 0 7.6 3.2 7.3 5.2 Bacteria Firmicutes 16062 Leuconostoc citreum KM20 DQ489740 NC_010470 Plasmid pLCK1 0.6261 49 38713 790.1 0.829411 cir 0 0 0 16.8 0 0.4 0 0 8000 34000 1.4052 4.58574 0 0 0 0 0 0 10.7 4.3 4.9 4.9 Bacteria Firmicutes 315 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 CP000415 NC_008496 Plasmid pLEUM1 0.6461 35 37367 1067.6 0.610137 cir 0 0 0 15.1 12.8 0.5 0 0 23 52.2 27000 7000 1.6485 4.48291 0 0 0 0 0 0 6.6 4.8 6.6 5.7 Bacteria Firmicutes 315 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 CP000414 NC_008531 Chromosome 0.6229 1970 2038396 1034.7 0.883377 cir 4 4 4 2.8 1.9 0.3 71 71 1653 19.2 0 1133000 1.2633 4.61291 8 6 0 1 7 0 5.6 3.1 4.8 3.9 Bacteria Firmicutes 86 Listeria innocua Clip11262 AL592022 NC_003212 Chromosome 0.6256 2981 3011208 1010.1 0.890305 cir 6 6 6 2.5 3.3 0.4 66 66 2546 17.1 5000 1445000 2.5096 4.53974 16 8 1 1 10 0 6.4 3 4.2 4.8 Bacteria Firmicutes 86 Listeria innocua Clip11262 AL592102 NC_003383 Plasmid pLI100 0.6448 80 81905 1023.8 0.838752 cir 0 0 0 9.8 10.3 0.5 0 0 52 53.8 23000 74000 3.5358 4.43901 1 1 0 0 1 0 6.7 4.2 5.9 6.4 Bacteria Firmicutes 276 Listeria monocytogenes EGD-e AL591824 NC_003210 Chromosome 0.6202 2855 2944528 1031.4 0.890792 cir 6 6 6 2.1 1.5 0.4 67 67 2476 15.3 4000 1441000 2.4851 4.56782 17 9 1 1 11 0 6 2.9 4.2 4.5 Bacteria Firmicutes 29409 Listeria monocytogenes HCC23 CP001175 NC_011660 Chromosome 0.6181 2974 2976212 1000.7 0.886291 cir 6 6 6 2 1.7 0.4 67 67 2654000 1197000 2.5022 4.57522 16 8 1 1 10 0 5.9 2.9 4.1 4.5 Bacteria Firmicutes 85 Listeria monocytogenes str. 4b F2365 AE017262 NC_002973 Chromosome 0.6196 2821 2905187 1029.8 0.883432 cir 6 6 6 2.4 1.8 0.4 67 67 2403 17.4 0 1434000 2.496 4.56978 16 8 1 1 10 0 6 2.9 4.2 4.5 Bacteria Firmicutes 13443 Listeria welshimeri serovar 6b str. SLCC5334 AM263198 NC_008555 Chromosome 0.6365 2780 2814130 1012.3 0.885544 cir 6 6 6 2.7 1.5 0.5 66 66 2358 17.9 3000 1421000 2.63 4.49884 18 9 1 1 11 0 6.7 3.5 4.7 5.2 Bacteria Firmicutes 19619 Lysinibacillus sphaericus C3-41 CP000818 NC_010381 Plasmid pBsph 0.669 187 177642 950 0.794632 cir 0 0 0 0.3 0.7 0.4 0 0 0 84000 2.8648 4.34336 0 0 0 0 0 0 7.1 4.8 7.2 6.1 Bacteria Firmicutes 19619 Lysinibacillus sphaericus C3-41 CP000817 NC_010382 Chromosome 0.6271 4584 4639821 1012.2 0.801385 cir 11 10 10 3.2 2.7 0.3 85 85 0 2887000 2.3807 4.53032 57 28 1 5 34 0 5.4 3.1 4.8 4.2 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009485 NC_011995 Plasmid pMCCL1 0.7182 14 15667 1119.1 0.728665 cir 0 0 0 3.3 0.5 0.5 0 0 12000 2000 2.5595 4.19351 0 0 0 0 0 0 16.3 10.1 16.1 13.9 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009484 NC_011999 Chromosome 0.6312 1957 2102324 1074.3 0.875427 cir 5 4 4 1.8 1.7 0.4 48 48 0 1168000 1.8316 4.55518 14 7 0 4 11 0 6.2 3.1 5.1 4.7 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009486 NC_011996 Plasmid pMCCL2 0.6918 69 80545 1167.3 0.787212 cir 0 0 0 4.7 2 0.6 0 0 72000 22000 3.1063 4.27165 0 0 0 0 0 0 11.9 5.9 8.5 8.6 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009487 NC_011997 Plasmid pMCCL3 0.6729 1 2131 2131 0.467386 cir 0 0 0 0 0 0 0 0 0 1000 4.9742 4.32479 0 0 0 0 0 0 22.7 14.9 17.6 16.3 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009488 NC_011998 Plasmid pMCCL4 0.6693 2 3417 1708.5 0.637401 cir 0 0 0 0 0 0.7 0 0 0 2000 6.4969 4.3305 0 0 0 0 0 0 18.6 4.7 9.7 11.8 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009489 NC_012000 Plasmid pMCCL5 0.6839 4 4398 1099.5 0.616644 cir 0 0 0 0 1.3 1.3 0 0 4000 2000 3.2742 4.31242 0 0 0 0 0 0 13.3 5.5 11.6 5.5 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009490 NC_012001 Plasmid pMCCL6 0.6484 4 4226 1056.5 0.553005 cir 0 0 0 2.3 0 0.9 0 0 2000 0 6.1997 4.35849 0 0 0 0 0 0 11.8 5.4 10.2 6.2 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009491 NC_012002 Plasmid pMCCL7 0.6368 5 4061 812.2 0.693425 cir 0 0 0 2.1 0 1.6 0 0 4000 2000 7.1165 4.41389 0 0 0 0 0 0 9.1 4.8 6.5 3.2 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 AP009492 NC_012003 Plasmid pMCCL8 0.6904 3 2968 989.3 0.548854 cir 0 0 0 0 0 0 0 0 0 1000 6.6375 4.27091 0 0 0 0 0 0 15.5 9.9 21.3 13.6 Bacteria Other Bacteria 262 Magnetococcus sp. MC-1 CP000471 NC_008576 Chromosome 0.4583 3716 4719581 1270.1 0.864112 cir 3 3 3 12.9 10.5 0.4 45 45 3163 17.5 25000 2322000 1.433 5.16653 135 76 0 0 76 0 5.3 1.7 3 2.6 Bacteria Alphaproteobacteria 16217 Magnetospirillum magneticum AMB-1 AP007255 NC_007626 Chromosome 0.3491 4559 4967148 1089.5 0.881223 cir 2 2 2 6 4.6 0.8 0 50 3692 23.5 157000 2611000 0.8605 5.61917 111 83 1 1 85 0 11.4 4.5 6.4 5.4 Bacteria Gammaproteobacteria 13068 Mannheimia succiniciproducens MBEL55E AE016827 NC_006300 Chromosome 0.5746 2384 2314078 970.7 0.893959 cir 7 6 6 3.3 2.6 0.4 60 60 2011 18.5 2303000 1052000 1.2351 4.82124 6 3 0 2 5 0 5.2 3 4.7 3.7 Bacteria Alphaproteobacteria 17333 Maricaulis maris MCS10 CP000449 NC_008347 Chromosome 0.3727 3063 3368780 1099.8 0.898038 cir 2 2 2 1.8 1.4 0.5 45 45 2610 17.4 3258000 1590000 0.6428 5.57217 46 33 0 1 34 0 6.9 3.1 4.6 3.7 Bacteria Gammaproteobacteria 13239 Marinobacter aquaeolei VT8 CP000515 NC_008738 Plasmid pMAQU01 0.4595 213 239623 1125 0.866006 cir 0 0 0 0.1 0.1 0.1 0 0 162 31.5 0 162000 0.944 5.16269 0 0 0 0 0 0 3.6 1.5 2.7 2.2 Bacteria Gammaproteobacteria 13239 Marinobacter aquaeolei VT8 CP000514 NC_008740 Chromosome 0.4273 3858 4326849 1121.5 0.900852 cir 3 3 3 4.9 4.5 0.3 51 51 3447 11.9 4325000 1680000 0.8071 5.28816 60 30 0 1 31 0 4.4 1.9 3 2.2 Bacteria Gammaproteobacteria 13239 Marinobacter aquaeolei VT8 CP000516 NC_008739 Plasmid pMAQU02 0.4684 201 213290 1061.1 0.806353 cir 0 0 0 4.5 6 0.2 0 0 160 25.6 149000 77000 1.1135 5.10759 0 1 0 0 1 0 3 1.7 2.4 1.9 Bacteria Gammaproteobacteria 17445 Marinomonas sp. MWYL1 CP000749 NC_009654 Chromosome 0.5741 4439 5100344 1149 0.877206 cir 9 8 8 3.7 2.3 0.2 83 83 3949 12.4 5086000 2522000 1.2644 4.73209 73 39 0 1 40 0 4.1 2 3.2 2.8 Bacteria Firmicutes 10650 Mesoplasma florum L1 AE017263 NC_006055 Chromosome 0.7298 683 793224 1161.4 0.92802 cir 2 2 2 1.7 1.9 1 29 29 644 6.1 0 380000 2.6291 4.14737 0 0 0 0 0 0 18.4 9.9 12.2 15.6 Bacteria Alphaproteobacteria 18 Mesorhizobium loti MAFF303099 BA000012 NC_002678 Chromosome 0.3725 6752 7036071 1042.1 0.864697 cir 2 2 2 3.6 2.3 0.6 50 54 5463 23.6 4738000 299000 0.7212 5.58056 54 36 4 0 46 6 8.1 3.7 5.6 4.2 Bacteria Alphaproteobacteria 18 Mesorhizobium loti MAFF303099 BA000013 NC_002679 Plasmid pMLa 0.4071 320 351911 1099.7 0.798119 cir 0 0 0 1.7 4 0.2 0 0 246 30.1 61000 171000 0.9679 5.41047 0 0 0 0 0 0 3.9 2.4 3.9 2.8 Bacteria Alphaproteobacteria 18 Mesorhizobium loti MAFF303099 AP003017 NC_002682 Plasmid pMLb 0.4012 209 208315 996.7 0.706665 cir 0 0 0 3 0.7 0.3 0 0 133 57.1 139000 64000 0.8161 5.4281 5 0 1 0 5 4 4.6 2.6 4.2 3 Bacteria Alphaproteobacteria 10690 Mesorhizobium sp. BNC1 CP000390 NC_008254 Chromosome 0.3893 4064 4412446 1085.7 0.89327 cir 2 2 2 1.6 1.2 0.3 51 51 3414 19 3471000 1734000 1.3844 5.46987 31 20 0 0 25 5 5.1 2.9 4 3.3 Bacteria Alphaproteobacteria 10690 Mesorhizobium sp. BNC1 CP000389 NC_008242 Plasmid 1 0.3826 317 343931 1085 0.846242 cir 0 0 0 5.6 0.3 0.2 1 1 264 20.1 115000 287000 0.8752 5.51142 1 1 0 0 1 0 5.4 3.2 4.5 3.5 Bacteria Alphaproteobacteria 10690 Mesorhizobium sp. BNC1 CP000391 NC_008243 Plasmid 2 0.3979 113 131247 1161.5 0.857909 cir 0 0 0 0.2 0.8 0.3 0 0 99 14.1 44000 87000 0.9501 5.45455 0 0 0 0 0 0 4.7 2.6 3.5 3.2 Bacteria Alphaproteobacteria 10690 Mesorhizobium sp. BNC1 CP000392 NC_008244 Plasmid 3 0.3847 49 47561 970.6 0.858455 cir 0 0 0 0.3 0 0.2 0 0 34 44.1 6000 22000 1.0702 5.49299 0 0 0 0 0 0 6.1 3.4 5.1 3.8 Archaea Crenarchaeota 17447 Metallosphaera sedula DSM 5348 CP000682 NC_009440 Chromosome 0.5377 2256 2191517 971.4 0.875144 cir 0 1 1 0.8 0.4 0.3 42 46 1820 24 1094000 435000 4.7164 4.65647 0 0 0 0 0 0 4.4 2 2.3 2.9 Archaea Euryarchaeota 18653 Methanobrevibacter smithii ATCC 35061 CP000678 NC_009515 Chromosome 0.6897 1795 1853160 1032.4 0.901887 cir 0 2 2 4.9 2.5 0.9 34 36 1513 18.6 1256000 1850000 2.2568 4.29206 0 0 0 0 0 0 14.1 6.8 8.3 9.8 Archaea Euryarchaeota 102 Methanocaldococcus jannaschii DSM 2661 L77117 NC_000909 Chromosome 0.6857 1715 1664970 970.8 0.871742 cir 2 2 2 2.7 2.6 0.8 37 37 1712 0.2 929000 1648000 4.8806 4.21212 0 0 0 0 0 0 13.6 5.8 6.8 11 Archaea Euryarchaeota 102 Methanocaldococcus jannaschii DSM 2661 L77118 NC_001732 Chromosome extra-chr1 0.7181 43 58407 1358.3 0.712774 cir 0 0 0 1.9 0.2 0.9 0 0 43 0 0 24000 3.5509 4.1442 0 0 0 0 0 0 17.5 7.4 9.4 14.7 Archaea Euryarchaeota 102 Methanocaldococcus jannaschii DSM 2661 L77119 NC_001733 Extrachrom extra-chr2 0.7111 12 16550 1379.2 0.77577 cir 0 0 0 0.7 0 0.8 0 0 12 0 12000 6000 3.7221 4.1779 0 0 0 0 0 0 13.6 7 8.4 11.9 Archaea Euryarchaeota 9634 Methanococcoides burtonii DSM 6242 CP000300 NC_007955 Chromosome 0.5924 2273 2575032 1132.9 0.802768 cir 0 3 3 7.8 7.5 0.3 49 49 1988 14.3 1835000 55000 2.5101 4.648 18 21 4 0 25 0 5 2.3 3.4 3.2 Archaea Euryarchaeota 18641 Methanococcus aeolicus Nankai-3 CP000743 NC_009635 Chromosome 0.6996 1490 1569500 1053.4 0.841833 cir 0 2 2 3 2.4 1.5 37 38 1431 4.1 1198000 527000 3.0976 4.30703 1 1 0 0 1 0 18 8.6 10.5 15.1 Archaea Euryarchaeota 17641 Methanococcus maripaludis C5 CP000609 NC_009135 Chromosome 0.67 1813 1780761 982.2 0.865189 cir 0 3 3 3.4 1.6 0.8 36 36 1633 11 1588000 684000 2.81 4.3778 3 2 0 0 2 0 12 6 7.4 8.8 Archaea Euryarchaeota 17641 Methanococcus maripaludis C5 CP000610 NC_009136 Plasmid pMMC501 0.7276 9 8285 920.6 0.763066 cir 0 0 0 1.8 0 1.9 0 0 6 50 4000 0 4.8642 4.15757 0 0 0 0 0 0 27.9 10.2 14.1 18.5 Archaea Euryarchaeota 19639 Methanococcus maripaludis C6 CP000867 NC_009975 Chromosome 0.6658 1826 1744193 955.2 0.875119 cir 0 3 3 2.9 1.6 0.8 36 36 854000 1631000 2.8286 4.38952 3 2 0 0 2 0 11.5 5.8 6.9 8.6 Archaea Euryarchaeota 18819 Methanococcus maripaludis C7 CP000745 NC_009637 Chromosome 0.6672 1788 1772694 991.4 0.869215 cir 0 3 3 3.2 2.6 0.8 36 36 1614 10.8 1005000 289000 2.8038 4.38755 3 2 0 0 2 0 11.7 5.9 7.1 8.7 Archaea Euryarchaeota 10632 Methanococcus maripaludis S2 BX950229 NC_005791 Chromosome 0.669 1722 1661137 964.7 0.88854 cir 0 3 3 2.4 0.6 0.8 38 36 1592 8.2 48000 905000 2.815 4.37798 3 2 0 0 2 0 11.8 5.9 7.4 9 Archaea Euryarchaeota 17889 Methanococcus vannielii SB CP000742 NC_009634 Chromosome 0.6867 1678 1720048 1025.1 0.856395 cir 5 4 4 3.6 2.2 1.1 36 36 1567 7.1 1056000 73000 2.7056 4.30359 3 4 0 0 4 0 14.1 7.7 9.1 11 Archaea Euryarchaeota 18109 Methanocorpusculum labreanum Z CP000559 NC_008942 Chromosome 0.4999 1739 1804962 1037.9 0.86986 cir 3 3 3 4.1 3.3 0.4 52 52 1554 11.9 1000 877000 2.651 5.02181 0 0 0 0 0 0 4.5 1.6 2.9 2.1 Archaea Euryarchaeota 16330 Methanoculleus marisnigri JR1 CP000562 NC_009051 Chromosome 0.3794 2489 2478101 995.6 0.872293 cir 1 1 1 5.1 2.1 0.6 48 48 2064 20.6 32000 1319000 2.5756 5.44379 11 8 0 0 8 0 8.4 3.3 5.5 3.9 Archaea Euryarchaeota 294 Methanopyrus kandleri AV19 AE009439 NC_003551 Chromosome 0.3884 1691 1694969 1002.3 0.886842 cir 1 1 1 1.5 1.4 0.7 35 33 1581 7 492000 1211000 1.958 5.36527 0 0 0 0 0 0 6.6 2.5 3.8 4 Archaea Euryarchaeota 15765 Methanosaeta thermophila PT CP000477 NC_008553 Chromosome 0.4645 1696 1879471 1108.2 0.82092 cir 0 2 2 4.9 3.7 0.3 44 46 1498 13.2 1030000 168000 2.2292 5.05311 5 7 0 0 7 0 4.8 1.5 2.9 2.2 Archaea Euryarchaeota 290 Methanosarcina acetivorans C2A AE010299 NC_003552 Chromosome 0.5732 4540 5751492 1266.8 0.739709 cir 0 3 3 14.7 10.1 0.7 0 59 3659 24.1 5749000 3739000 4.2011 4.61866 20 14 34 0 48 0 8.1 2.6 3.7 4.4 Archaea Euryarchaeota 103 Methanosarcina barkeri str. Fusaro CP000098 NC_007349 Plasmid 1 0.6641 18 36358 2019.9 0.580312 cir 0 0 0 29.4 9.3 0.2 0 0 14 28.6 34000 23000 3.6498 4.301 0 0 0 0 0 0 16.5 2.9 4.5 6.8 Archaea Euryarchaeota 103 Methanosarcina barkeri str. Fusaro CP000099 NC_007355 Chromosome 1 0.6072 3607 4837408 1341.1 0.696464 cir 0 3 3 13.9 8.4 0.9 63 62 3062 17.8 1193000 4243000 3.516 4.49819 13 4 20 0 24 0 9.8 3.4 4.7 5.5 Archaea Euryarchaeota 300 Methanosarcina mazei Go1 AE008384 NC_003901 Chromosome 0.5852 3371 4096345 1215.2 0.749323 cir 3 3 3 7.8 5.2 0.8 57 57 2880 17 1573000 94000 4.352 4.56159 17 9 21 0 30 0 8.9 2.8 4 5.1 Archaea Euryarchaeota 15579 Methanosphaera stadtmanae DSM 3091 CP000102 NC_007681 Chromosome 0.7237 1534 1767403 1152.2 0.840151 cir 0 4 4 5.6 4.2 1.3 40 42 1351 13.5 32000 874000 2.3855 4.20092 0 0 0 0 0 0 20.8 10 12.1 16.6 Archaea Euryarchaeota 13015 Methanospirillum hungatei JF-1 CP000254 NC_007796 Chromosome 0.5485 3139 3544738 1129.3 0.859122 cir 0 4 4 6.4 4.6 0.3 51 51 2678 17.2 3494000 1022000 3.3851 4.79716 85 16 5 0 21 0 4.5 1.8 2.9 2.1 Archaea Euryarchaeota 289 Methanothermobacter thermautotrophicus str. Delta H AE000666 NC_000916 Chromosome 0.5046 1869 1751377 937.1 0.901819 cir 0 2 2 2.8 0.8 0.5 39 39 1592 17.4 1292000 404000 2.9206 4.86352 11 1 15 0 16 0 6.2 1.9 2.8 2.9 Bacteria Other Bacteria 28995 Methylacidiphilum infernorum V4 CP000975 NC_010794 Chromosome 0.5452 2472 2287145 925.2 0.903343 cir 1 1 1 3.2 1.9 0.3 46 46 3000 1130000 7.4843 4.68088 11 7 0 1 8 0 4.7 2.9 3.5 3.7 Bacteria Betaproteobacteria 10789 Methylibium petroleiphilum PM1 CP000555 NC_008825 Chromosome 0.308 3819 4044195 1059 0.921207 cir 1 1 1 2.7 2.3 1.1 42 42 3307 15.5 114000 1986000 0.4137 5.83658 59 33 0 9 42 0 14.9 8.7 10.1 9.2 Bacteria Betaproteobacteria 10789 Methylibium petroleiphilum PM1 CP000556 NC_008826 Plasmid RPME01 0.3402 630 599444 951.5 0.861965 cir 0 0 0 14.2 4.6 0.5 27 27 402 56.7 495000 184000 0.7989 5.66076 2 2 0 0 2 0 8.9 5.2 5.7 5.8 Bacteria Betaproteobacteria 10647 Methylobacillus flagellatus KT CP000284 NC_007947 Chromosome 0.4428 2753 2971517 1079.4 0.901097 cir 2 2 2 10.1 0.6 0.3 46 46 2403 14.6 5000 1578000 0.8617 5.27843 42 20 0 7 27 0 4.5 1.6 3.2 2.1 Bacteria Alphaproteobacteria 19527 Methylobacterium chloromethanicum CM4 CP001298 NC_011757 Chromosome 0.3179 5173 5777908 1116.9 0.832088 cir 5 5 5 5.1 4.3 0.9 61 61 4210000 211000 0.7148 5.75282 92 53 8 3 76 12 12.2 6.6 8.6 7.7 Bacteria Alphaproteobacteria 19527 Methylobacterium chloromethanicum CM4 CP001299 NC_011758 Plasmid pMCHL01 0.3366 306 380207 1242.5 0.798952 cir 0 0 0 5.1 2.6 0.6 0 0 291000 156000 0.7346 5.66382 3 1 0 1 2 0 8.3 5.1 7.2 5.7 Bacteria Alphaproteobacteria 19527 Methylobacterium chloromethanicum CM4 CP001300 NC_011760 Plasmid pMCHL02 0.3613 37 22617 611.3 0.772605 cir 0 0 0 0.6 0 0.2 0 0 16000 4000 1.1142 5.55609 0 0 0 0 0 0 6.1 3.5 4.1 4.2 Bacteria Alphaproteobacteria 18637 Methylobacterium extorquens PA1 CP000908 NC_010172 Chromosome 0.3182 4829 5471154 1133 0.839328 cir 5 5 5 4.9 2.7 0.9 58 58 4068000 377000 0.7169 5.75311 83 45 8 3 69 13 12.3 6.7 8.7 7.7 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001349 NC_011894 Chromosome 0.3114 7356 7772460 1056.6 0.812807 cir 7 7 7 12.9 12.3 0.9 71 71 4562000 7682000 0.7904 5.76167 88 52 7 2 66 5 13.1 7.5 10 8.7 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001350 NC_011892 Plasmid pMNOD01 0.3412 402 487734 1213.3 0.715718 cir 0 0 0 9.1 8 0.5 2 2 253000 69000 0.718 5.64842 1 1 0 0 1 0 8.4 5.2 6.9 5.6 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001351 NC_011887 Plasmid pMNOD02 0.3435 409 458070 1120 0.746635 cir 0 0 0 5.5 4.8 0.6 0 0 112000 269000 0.7016 5.63832 3 0 0 0 1 1 8.5 4.6 6.9 5.8 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001352 NC_011893 Plasmid pMNOD03 0.3581 53 40463 763.5 0.612733 cir 0 0 0 3.4 0 0.6 0 0 5000 31000 0.8057 5.55624 0 0 0 0 0 0 8.4 4.4 6.4 5.5 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001353 NC_011895 Plasmid pMNOD04 0.3844 48 37542 782.1 0.635981 cir 0 0 0 1.2 0 0.7 0 0 29000 8000 0.7964 5.46672 1 1 1 0 2 0 7.7 3 5.5 3.5 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001354 NC_011888 Plasmid pMNOD05 0.3863 21 20286 966 0.736715 cir 0 0 0 0 0 0.4 0 0 11000 1000 1.1239 5.44167 0 0 0 0 0 0 5.9 4.3 6.8 3.2 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001355 NC_011889 Plasmid pMNOD06 0.3955 13 12638 972.2 0.789286 cir 0 0 0 0 0 0.4 0 0 7000 2000 1.084 5.38885 0 0 0 0 0 0 6.4 3.3 6 3.7 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 CP001356 NC_011890 Plasmid pMNOD07 0.3276 7 9829 1404.1 0.561502 cir 0 0 0 1.3 0 0.9 0 0 9000 3000 1.0683 5.68304 0 0 0 0 0 0 10.9 3.6 5.5 4.9 Bacteria Alphaproteobacteria 19559 Methylobacterium populi BJ001 CP001029 NC_010725 Chromosome Bacteria Alphaproteobacteria 19559 Methylobacterium populi BJ001 CP001030 NC_010727 Plasmid pMPOP01 0.3514 25 25164 1006.6 0.761206 cir 0 0 0 7.1 0 0.2 0 0 13000 5000 0.5047 5.62127 0 0 0 0 0 0 7.7 3.7 5.8 4.1 Bacteria Alphaproteobacteria 19559 Methylobacterium populi BJ001 CP001031 NC_010721 Plasmid pMPOP02 0.3321 26 23392 899.7 0.808824 cir 0 0 0 0 0 0.9 0 0 17000 9000 0.4104 5.70697 0 0 0 0 0 0 11.7 4.6 7.9 6.2 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001009 NC_010507 Plasmid pMRAD08 0.3487 27 21022 778.6 0.784369 cir 0 0 0 0 0 0.1 0 0 12000 20000 0.5185 5.60074 0 0 0 0 0 0 10 5.9 8.8 6 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001001 NC_010505 Chromosome 0.285 5686 6077833 1068.9 0.862375 cir 4 4 4 4 3.3 1.3 56 56 4574000 1603000 0.4508 5.88443 106 58 5 3 79 13 17.7 10.7 12.9 11.6 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001003 NC_010509 Plasmid pMRAD02 0.3752 52 47003 903.9 0.810267 cir 0 0 0 6.7 0 0.8 0 0 38000 18000 0.5553 5.57297 0 0 0 0 0 0 9.7 3.7 7.1 5 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001002 NC_010510 Plasmid pMRAD01 0.3045 507 586164 1156.1 0.791033 cir 2 2 2 2.9 1.8 0.8 1 1 219000 493000 0.544 5.81155 10 5 0 0 9 4 13.9 8.2 10.8 9.2 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001004 NC_010514 Plasmid pMRAD03 0.3677 43 42985 999.7 0.69508 cir 0 0 0 0.3 2.1 0.5 1 1 10000 26000 0.7072 5.53834 0 0 0 0 0 0 6.6 4.3 5.1 5.1 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001007 NC_010502 Plasmid pMRAD06 0.3899 23 27836 1210.3 0.643016 cir 0 0 0 10.8 0 0.8 1 1 16000 25000 0.8909 5.45144 0 0 0 0 0 0 10.2 4.2 5.1 5.9 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001008 NC_010504 Plasmid pMRAD07 0.3894 21 22114 1053 0.725197 cir 0 0 0 0 0 0.1 0 0 5000 16000 0.6783 5.43365 0 0 0 0 0 0 6.1 1.6 4.6 3.2 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001005 NC_010517 Plasmid pMRAD04 0.3631 41 37743 920.6 0.696341 cir 0 0 0 0.3 1 0.3 1 1 25000 7000 0.6544 5.55393 0 0 0 0 0 0 7.6 4.1 4.6 5.2 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 CP001006 NC_010518 Plasmid pMRAD05 0.3798 31 36410 1174.5 0.618676 cir 0 0 0 1.4 0 0.7 0 0 33000 10000 0.8102 5.49061 0 0 0 0 0 0 5.9 3.7 4.1 3.7 Bacteria Alphaproteobacteria 18809 Methylobacterium sp. 4-46 CP000943 NC_010511 Chromosome 0.2842 6609 7659055 1158.9 0.814338 cir 6 6 6 7.8 6.7 1.3 63 63 7302000 3623000 0.6818 5.87055 115 70 7 2 92 13 19.5 11.9 14.5 13.4 Bacteria Alphaproteobacteria 18809 Methylobacterium sp. 4-46 CP000944 NC_010373 Plasmid pM44601 0.3489 62 57951 934.7 0.657573 cir 0 0 0 1.7 7.4 0.8 0 0 49000 27000 0.868 5.60257 0 0 0 0 0 0 9.6 4.5 6.4 6.4 Bacteria Alphaproteobacteria 18809 Methylobacterium sp. 4-46 CP000945 NC_010374 Plasmid pM44602 0.4084 21 20019 953.3 0.811429 cir 0 0 0 0 0 0.2 0 0 16000 10000 1.4187 5.31157 0 0 0 0 0 0 3.9 4.3 5.8 3.1 Bacteria Alphaproteobacteria 20635 Methylocella silvestris BL2 CP001280 NC_011666 Chromosome 0.3692 3818 4305430 1127.7 0.851757 cir 2 2 2 1.3 0.5 0.5 49 49 3130000 601000 0.8168 5.59876 45 26 3 4 35 2 8.7 4.9 6.9 5.6 Bacteria Gammaproteobacteria 21 Methylococcus capsulatus str. Bath AE017282 NC_002977 Chromosome 0.3642 2960 3304561 1116.4 0.892659 cir 2 2 2 2.3 2 0.5 46 46 2578 14.8 3302000 1536000 1.0429 5.56831 22 13 0 1 14 0 7 3.6 4.8 4.4 Bacteria Cyanobacteria 27835 Microcystis aeruginosa NIES-843 AP009552 NC_010296 Chromosome 0.5767 6312 5842795 925.7 0.812227 cir 2 2 2 24 20.5 1.2 42 42 4518000 1521000 2.8088 4.63494 25 18 0 0 18 0 6.7 2.6 3.8 4 Bacteria Firmicutes 10648 Moorella thermoacetica ATCC 39073 CP000232 NC_007644 Chromosome 0.4421 2463 2628784 1067.3 0.86218 cir 1 1 1 2.2 1.8 0.5 51 51 2159 14.1 1000 1148000 2.7678 5.12089 18 5 0 2 7 0 5.7 2.9 4.2 3.3 Bacteria Actinobacteria 15691 Mycobacterium abscessus CU458745 NC_010394 Plasmid 0.3214 21 23319 1110.4 0.7906 cir 0 0 0 0 0 0.7 0 0 11000 23000 0.446 5.80489 0 0 0 0 0 0 11.5 4.9 10.1 8.6 Bacteria Actinobacteria 15691 Mycobacterium abscessus CU458896 NC_010397 Chromosome 0.3587 4920 5067172 1029.9 0.924208 cir 1 1 1 1.9 1.3 0.5 47 47 2000 2654000 0.3894 5.64616 17 10 1 3 14 0 6.6 3.5 4.8 4.1 Bacteria Actinobacteria 88 Mycobacterium avium 104 CP000479 NC_008595 Chromosome 0.3101 5120 5475491 1069.4 0.884648 cir 1 1 1 9.3 5.1 1.1 46 46 4253 20.4 5388000 2913000 0.259 5.85642 17 12 1 2 15 0 14.4 8 10 8.7 Bacteria Actinobacteria 91 Mycobacterium avium subsp. paratuberculosis K-10 AE016958 NC_002944 Chromosome 0.307 4350 4829781 1110.3 0.913429 cir 1 1 1 4.9 3.6 1.1 0 46 3887 11.9 3775000 1902000 0.2544 5.87079 17 12 1 2 15 0 14.8 8.5 10.3 9.1 Bacteria Actinobacteria 89 Mycobacterium bovis AF2122/97 BX248333 NC_002945 Chromosome 0.3437 3953 4345492 1099.3 0.90861 cir 1 1 1 6.1 3.5 0.7 45 45 3443 14.8 2000 2127000 0.2576 5.72429 12 8 1 2 11 0 10.6 4.8 6.8 6.9 Bacteria Actinobacteria 18059 Mycobacterium bovis BCG str. Pasteur 1173P2 AM408590 NC_008769 Chromosome 0.3436 3988 4374522 1096.9 0.910476 cir 1 1 1 9 3.5 0.7 47 47 3464 15.1 31000 2087000 0.2586 5.72449 12 8 2 2 12 0 10.6 4.9 6.8 6.9 Bacteria Actinobacteria 15760 Mycobacterium gilvum PYR-GCK CP000656 NC_009338 Chromosome 0.3208 5241 5619607 1072.2 0.923128 cir 2 2 2 5.8 3.6 0.9 46 46 4546 15.3 859000 3566000 0.295 5.80827 27 15 1 3 19 0 11.8 5.6 8.3 6.4 Bacteria Actinobacteria 15760 Mycobacterium gilvum PYR-GCK CP000657 NC_009339 Plasmid pMFLV01 0.3486 298 321253 1078 0.829458 lin 0 0 0 18 1.6 0.6 1 1 235 26.8 0.3723 5.68165 2 1 0 0 1 0 8.2 3.8 5.8 5.2 Bacteria Actinobacteria 15760 Mycobacterium gilvum PYR-GCK CP000658 NC_009340 Plasmid pMFLV02 0.3581 24 25309 1054.5 0.769094 cir 0 0 0 0 0 0.4 0 0 15 60 7000 15000 0.5492 5.63498 0 0 0 0 0 0 6.9 4.4 7.4 5.6 Bacteria Actinobacteria 15760 Mycobacterium gilvum PYR-GCK CP000659 NC_009341 Plasmid pMFLV03 0.3484 16 16660 1041.2 0.854982 cir 0 0 0 0 0 0.5 0 0 9 77.8 10000 2000 0.7383 5.67951 0 0 0 0 0 0 10.3 3.9 5.5 6.1 Bacteria Actinobacteria 31271 Mycobacterium leprae Br4923 FM211192 NC_011896 Chromosome 0.422 2720 3268071 1201.5 0.766161 cir 1 1 1 2.6 2.8 0.2 45 45 2000 1700000 0.3624 5.37974 5 4 1 0 5 0 3.6 2.2 3.1 2.6 Bacteria Actinobacteria 90 Mycobacterium leprae TN AL450380 NC_002677 Chromosome 0.422 2720 3268203 1201.5 0.766201 cir 1 1 1 2.6 2.8 0.2 45 45 1380 97.1 2000 1700000 0.3649 5.37969 5 4 1 0 5 0 3.6 2.2 3.1 2.6 Bacteria Actinobacteria 16725 Mycobacterium marinum M CP000854 NC_010612 Chromosome 0.3427 5423 6636827 1223.8 0.898673 cir 1 1 1 9 6 0.7 46 46 2000 3301000 0.2805 5.71894 18 11 1 2 14 0 11.6 4.7 6.7 7.8 Bacteria Actinobacteria 16725 Mycobacterium marinum M CP000895 NC_010604 Plasmid pMM23 0.3214 29 23317 804 0.881803 cir 0 0 0 0 0 0.7 0 0 8000 18000 0.446 5.80444 0 0 0 0 0 0 11.7 5 10.1 8.4 Bacteria Actinobacteria 92 Mycobacterium smegmatis str. MC2 155 CP000480 NC_008596 Chromosome 0.326 6716 6988209 1040.5 0.90575 cir 2 2 2 5.6 3.2 0.8 47 47 5614 19.6 6949000 3400000 0.2641 5.81064 32 12 1 12 25 0 10.8 5.4 7.9 6.1 Bacteria Actinobacteria 16079 Mycobacterium sp. JLS CP000580 NC_009077 Chromosome 0.3164 5739 6048425 1053.9 0.927349 cir 2 2 2 3.9 2.9 0.9 48 48 4941 16.2 5841000 2913000 0.286 5.8345 28 15 1 5 21 0 12.4 6 8.6 6.9 Bacteria Actinobacteria 16081 Mycobacterium sp. KMS CP000519 NC_008703 Plasmid pMKMS01 0.346 283 302089 1067.5 0.823814 cir 0 0 0 8.9 1.8 0.7 0 0 214 32.2 6000 97000 0.4135 5.69314 2 1 0 0 1 0 8.7 4.1 6.3 5.4 Bacteria Actinobacteria 16081 Mycobacterium sp. KMS CP000518 NC_008705 Chromosome 0.3156 5460 5737227 1050.8 0.928987 cir 2 2 2 3.8 2.7 0.9 48 48 4684 16.6 5540000 2989000 0.2889 5.83744 26 14 1 5 20 0 12.6 6.1 8.7 6.9 Bacteria Actinobacteria 16081 Mycobacterium sp. KMS CP000520 NC_008704 Plasmid pMKMS02 0.3337 232 216763 934.3 0.885516 cir 0 0 0 5.2 6.3 0.8 0 0 168 38.1 114000 187000 0.3492 5.74409 0 0 0 0 0 0 10 5.2 7 6.8 Bacteria Actinobacteria 15762 Mycobacterium sp. MCS CP000384 NC_008146 Chromosome 0.3155 5391 5705448 1058.3 0.929056 cir 2 2 2 3.3 2.3 0.9 48 48 4652 15.9 5399000 2973000 0.2879 5.83828 26 14 1 5 20 0 12.6 6.1 8.7 6.9 Bacteria Actinobacteria 15762 Mycobacterium sp. MCS CP000385 NC_008147 Plasmid1 0.3339 224 215075 960.2 0.862643 lin 0 0 0 4 7.1 0.8 0 0 165 35.8 0.3566 5.7425 0 0 0 0 0 0 9.9 5.2 7 6.8 Bacteria Actinobacteria 223 Mycobacterium tuberculosis CDC1551 AE000516 NC_002755 Chromosome 0.3439 4189 4403837 1051.3 0.901838 cir 1 1 1 6.2 3.7 0.7 0 45 3416 22.6 2000 2125000 0.2552 5.72361 12 8 1 2 11 0 10.5 4.8 6.8 6.8 Bacteria Actinobacteria 15642 Mycobacterium tuberculosis F11 CP000717 NC_009565 Chromosome 0.3438 3950 4424435 1120.1 0.91092 cir 1 1 1 6.8 4 0.7 45 45 3490 13.2 2000 2136000 0.2544 5.72342 12 8 1 2 11 0 10.5 4.9 6.8 6.9 Bacteria Actinobacteria 18883 Mycobacterium tuberculosis H37Ra CP000611 NC_009525 Chromosome 0.3439 4034 4419977 1095.7 0.909075 cir 1 1 1 6.7 4 0.7 45 45 3524 14.5 2000 2129000 0.2547 5.72318 12 8 1 2 11 0 10.5 4.9 6.8 6.8 Bacteria Actinobacteria 224 Mycobacterium tuberculosis H37Rv AL123456 NC_000962 Chromosome 0.3439 3999 4411532 1103.2 0.909053 cir 1 1 1 6.7 4 0.7 45 45 3514 13.8 2000 2128000 0.2543 5.72323 12 8 1 2 11 0 10.5 4.9 6.8 6.8 Bacteria Actinobacteria 16230 Mycobacterium ulcerans Agy99 CP000325 NC_008611 Chromosome 0.3453 4160 5631606 1353.8 0.721731 cir 1 1 1 9.9 8.8 0.7 45 45 3622 14.9 385000 2477000 0.2764 5.70786 15 8 1 1 10 0 9.6 4.3 6.3 6.7 Bacteria Actinobacteria 16230 Mycobacterium ulcerans Agy99 BX649209 NC_005916 Plasmid pMUM001 0.3723 81 174155 2150.1 0.924303 cir 0 0 0 71.9 14.2 0.9 0 0 25000 136000 0.1872 5.5958 0 0 0 0 0 0 10.2 2.5 4.2 7.3 Bacteria Actinobacteria 15761 Mycobacterium vanbaalenii PYR-1 CP000511 NC_008726 Chromosome 0.3221 5979 6491865 1085.8 0.913355 cir 2 2 2 5.2 4.7 0.8 49 49 5133 16.5 2000 3281000 0.292 5.80053 36 17 1 8 26 0 11.7 5.7 8.2 6.7 Bacteria Firmicutes 16095 Mycoplasma agalactiae PG2 CU179680 NC_009497 Chromosome 0.7029 751 877438 1168.4 0.882183 cir 2 2 2 3.7 0.6 0.6 34 34 672 11.8 50000 603000 2.034 4.21176 0 0 0 0 0 0 12.7 7.2 10.2 9.6 Bacteria Firmicutes 1422 Mycoplasma arthritidis 158L3-1 CP001047 NC_011025 Chromosome 0.6929 631 820453 1300.2 0.883021 cir 1 1 1 7 4.5 0.7 32 33 225000 625000 2.3168 4.25306 0 0 0 0 0 0 13.9 7 8.3 11.7 Bacteria Firmicutes 16208 Mycoplasma capricolum subsp. capricolum ATCC 27343 CP000123 NC_007633 Chromosome 0.7623 812 1010023 1243.9 0.882073 cir 2 2 2 7.3 2.8 1.6 30 30 765 6.1 0 536000 2.2622 4.00388 0 0 0 0 0 0 27 16.1 19.4 22.8 Bacteria Firmicutes 409 Mycoplasma gallisepticum R AE015450 NC_004829 Chromosome 0.6855 726 996422 1372.5 0.872713 cir 2 2 2 10.2 10 0.9 33 32 712 2 524000 0 1.6437 4.27765 0 0 0 0 0 0 12.7 6.7 11.4 8.6 Bacteria Firmicutes 97 Mycoplasma genitalium G37 L43967 NC_000908 Chromosome 0.6831 476 580076 1218.6 0.906095 cir 1 1 1 3.9 0 0.8 36 36 476 0 580000 296000 2.3678 4.25463 0 0 0 0 0 0 11.3 6.6 9.4 8.5 Bacteria Firmicutes 13120 Mycoplasma hyopneumoniae 232 AE017332 NC_006360 Chromosome 0.7144 691 892758 1292 0.897315 cir 1 1 1 3.6 3.3 1.4 30 30 622 11.1 513000 803000 3.1581 4.18292 0 0 0 0 0 0 19.3 13.1 17.1 16.5 Bacteria Firmicutes 10639 Mycoplasma hyopneumoniae 7448 AE017244 NC_007332 Chromosome 0.7151 663 920079 1387.8 0.859403 cir 1 1 1 6.9 3.9 1.4 30 30 634 4.6 511000 787000 3.1167 4.18134 0 0 0 0 0 0 19.5 13.4 17.3 16.6 Bacteria Firmicutes 10675 Mycoplasma hyopneumoniae J AE017243 NC_007295 Chromosome 0.7148 674 897405 1331.5 0.879254 cir 1 1 1 6.5 3.7 1.4 30 30 619 8.9 765000 451000 3.1614 4.18246 0 0 0 0 0 0 19.2 13.3 17.2 16.4 Bacteria Firmicutes 10697 Mycoplasma mobile 163K AE017308 NC_006908 Chromosome 0.7505 635 777079 1223.7 0.90774 cir 1 1 1 6 0.2 1.3 28 28 588 8 354000 39000 3.198 4.04567 0 0 0 0 0 0 24.2 15.4 17.8 19.9 Bacteria Firmicutes 10616 Mycoplasma mycoides subsp. mycoides SC str. PG1 BX293980 NC_005364 Chromosome 0.7603 1016 1211703 1192.6 0.815007 cir 2 2 2 27 15.7 1.3 30 30 880 15.5 1075000 598000 2.3148 4.02138 0 0 0 0 0 0 24.2 14.8 17.2 21.9 Bacteria Firmicutes 176 Mycoplasma penetrans HF-2 BA000026 NC_004432 Chromosome 0.7428 1037 1358633 1310.2 0.885854 cir 1 1 1 13.5 5.5 1 30 30 903 14.8 0 687000 2.5316 4.07012 0 0 0 0 0 0 20.4 12.9 16.8 16.6 Bacteria Firmicutes 99 Mycoplasma pneumoniae M129 U00089 NC_000912 Chromosome 0.5999 688 816394 1186.6 0.877798 cir 1 1 1 13.3 3 0.5 37 37 688 0 446000 1000 1.8026 4.57262 0 0 0 0 0 0 6.8 3.5 5.2 4.3 Bacteria Firmicutes 100 Mycoplasma pulmonis UAB CTIP AL445566 NC_002771 Chromosome 0.7336 782 963879 1232.6 0.900219 cir 2 1 1 6.1 2.1 1.2 29 29 703 11.2 960000 570000 3.3518 4.05016 0 0 0 0 0 0 22.2 14.4 17.6 18.3 Bacteria Firmicutes 10676 Mycoplasma synoviae 53 AE017245 NC_007294 Chromosome 0.715 672 799476 1189.7 0.891586 cir 3 2 2 12.9 6.8 1 34 34 619 8.6 292000 52000 2.2814 4.13622 0 0 0 0 0 0 18.3 11.7 16.4 15.2 Bacteria Deltaproteobacteria 1421 Myxococcus xanthus DK 1622 CP000113 NC_008095 Chromosome 0.3111 7331 9139763 1246.7 0.905196 cir 4 4 4 4 2.7 0.7 65 65 6263 17.1 22000 4540000 1.0679 5.74434 160 113 0 2 115 0 12.5 6.5 7.2 7.8 Archaea Nanoarchaeota 9599 Nanoarchaeum equitans Kin4-M AE017199 NC_005213 Chromosome 0.6844 536 490885 915.8 0.918891 cir 1 1 1 0.5 0.4 0.8 0 38 480 11.7 387000 83000 4.6272 4.22564 0 0 0 0 0 0 12.5 5.4 6.5 9.7 Bacteria Firmicutes 20207 Natranaerobius thermophilus JW/NM-WN-LF CP001034 NC_010718 Chromosome 0.6368 2882 3165557 1098.4 0.862965 cir 4 4 4 5.7 5.3 0.6 51 51 3165000 1580000 2.883 4.39791 22 6 0 5 11 0 6.7 3.3 4.5 5.4 Bacteria Firmicutes 20207 Natranaerobius thermophilus JW/NM-WN-LF CP001035 NC_010715 Plasmid pNTHE01 0.6584 14 17207 1229.1 0.493636 cir 0 0 0 0 0 0.4 0 0 16000 7000 4.2541 4.31959 0 0 0 0 0 0 7.2 5.6 6.7 10.1 Bacteria Firmicutes 20207 Natranaerobius thermophilus JW/NM-WN-LF CP001036 NC_010724 Plasmid pNTHE02 0.643 10 8689 868.9 0.763264 cir 0 0 0 17.1 0 0.6 0 0 0 5000 4.638 4.37983 0 0 0 0 0 0 11.5 2 5.3 6.9 Archaea Euryarchaeota 15742 Natronomonas pharaonis DSM 2160 CR936258 NC_007427 Plasmid PL131 0.4278 132 130989 992.3 0.82271 cir 0 0 0 0.8 2.7 0.6 0 0 84 57.1 34000 74000 0.6924 5.31572 2 2 0 0 2 0 4.2 2.2 3.8 2.5 Archaea Euryarchaeota 15742 Natronomonas pharaonis DSM 2160 CR936257 NC_007426 Chromosome 0.3656 2675 2595221 970.2 0.907797 cir 1 1 1 2.1 1.8 0.9 46 47 2072 29.1 1334000 301000 0.5382 5.5843 12 11 0 0 11 0 10.5 3.8 7.4 4.7 Archaea Euryarchaeota 15742 Natronomonas pharaonis DSM 2160 CR936259 NC_007428 Plasmid PL23 0.3941 36 23486 652.4 0.838925 cir 0 0 0 0.6 0 0.6 0 0 9 300 4000 16000 0.4939 5.44551 0 0 0 0 0 0 7.8 3.3 4.2 3.8 Bacteria Betaproteobacteria 23 Neisseria gonorrhoeae FA 1090 AE004969 NC_002946 Chromosome 0.4731 2002 2153922 1075.9 0.78111 cir 4 4 4 8.5 6.3 0.6 0 55 1527 31.1 1893000 761000 1.2597 5.22576 3 3 0 1 4 0 7.1 2.7 5.3 4 Bacteria Betaproteobacteria 29335 Neisseria gonorrhoeae NCCP11945 CP001050 NC_011035 Chromosome 0.4763 2662 2232025 838.5 0.861319 cir 4 4 4 8.2 7.4 0.6 55 55 1944000 847000 1.282 5.20951 4 3 0 1 4 0 7 2.7 5.3 4 Bacteria Betaproteobacteria 29335 Neisseria gonorrhoeae NCCP11945 CP001051 NC_011034 Plasmid pNGK 0.4852 12 4153 346.1 0.751023 cir 0 0 0 0 0 0 0 0 3000 1000 1.0595 5.05742 0 0 0 0 0 0 7.2 0.8 1.7 4.8 Bacteria Betaproteobacteria 16393 Neisseria meningitidis 053442 CP000381 NC_010120 Chromosome 0.483 2020 2153416 1066 0.799127 cir 4 4 4 11 9.3 0.5 59 59 16000 1095000 1.1854 5.1785 4 4 0 1 5 0 7.7 2.7 5.6 3.8 Bacteria Betaproteobacteria 255 Neisseria meningitidis FAM18 AM421808 NC_008767 Chromosome 0.4838 1975 2194961 1111.4 0.823371 cir 4 4 4 11.1 9.8 0.6 0 59 1608 22.8 2194000 1121000 1.1775 5.17642 4 4 0 1 5 0 7.4 2.6 5.7 3.8 Bacteria Betaproteobacteria 251 Neisseria meningitidis MC58 AE002098 NC_003112 Chromosome 0.4847 2063 2272360 1101.5 0.790843 cir 4 4 4 13.4 10.4 0.6 0 59 1617 27.6 14000 1233000 1.1844 5.17144 4 4 0 1 5 0 7.6 2.6 5.6 3.8 Bacteria Betaproteobacteria 252 Neisseria meningitidis Z2491 AL157959 NC_003116 Chromosome 0.4819 1993 2184406 1096 0.820162 cir 4 4 4 9.8 9.2 0.6 0 58 1585 25.7 250000 1286000 1.1596 5.18367 4 4 0 1 5 0 7.5 2.7 5.6 3.8 Bacteria Alphaproteobacteria 357 Neorickettsia sennetsu str. Miyayama CP000237 NC_007798 Chromosome 0.5892 932 859006 921.7 0.872236 cir 1 1 1 0.7 0.1 0.2 33 33 693 34.5 855000 432000 2.9907 4.58723 3 2 0 0 2 0 3.5 1.9 2.2 2.9 Bacteria Epsilonproteobacteria 18963 Nitratiruptor sp. SB155-2 AP009178 NC_009662 Chromosome 0.6031 1857 1877931 1011.3 0.946311 cir 3 3 3 1.5 1.5 0.4 45 45 1611 15.3 2000 929000 3.906 4.57149 20 5 1 0 6 0 6.4 2.8 3.9 4.3 Bacteria Alphaproteobacteria 13473 Nitrobacter hamburgensis X14 CP000320 NC_007959 Plasmid 1 0.3959 239 294829 1233.6 0.631522 cir 0 0 0 16.1 10.2 0.3 0 0 155 54.2 258000 55000 0.8463 5.47553 0 0 0 0 0 0 5 2.8 4.2 3.3 Bacteria Alphaproteobacteria 13473 Nitrobacter hamburgensis X14 CP000319 NC_007964 Chromosome 0.3829 3804 4406967 1158.5 0.803849 cir 1 1 1 7.5 6.2 0.5 55 55 2973 28 125000 2233000 0.6339 5.56184 41 26 3 0 33 4 7 3.5 5.2 4.1 Bacteria Alphaproteobacteria 13473 Nitrobacter hamburgensis X14 CP000321 NC_007960 Plasmid 2 0.3881 172 188318 1094.9 0.854863 cir 0 0 0 2.9 1.3 0.2 0 0 123 39.8 13000 95000 0.7785 5.51481 0 0 0 0 0 0 5.5 3 4.3 3.8 Bacteria Alphaproteobacteria 13473 Nitrobacter hamburgensis X14 CP000322 NC_007961 Plasmid 3 0.383 111 121408 1093.8 0.737258 cir 0 0 0 6.2 0.1 0.2 0 0 81 37 4000 59000 0.8352 5.53473 0 0 0 0 2 2 5.7 3 5 3.6 Bacteria Alphaproteobacteria 13474 Nitrobacter winogradskyi Nb-255 CP000115 NC_007406 Chromosome 0.3795 3122 3402093 1089.7 0.839466 cir 1 1 1 6.9 6.6 0.5 49 49 2527 23.5 241000 1591000 0.7229 5.56629 32 19 1 0 22 2 7 3.5 5.5 4 Bacteria Gammaproteobacteria 13993 Nitrosococcus oceani ATCC 19707 CP000126 NC_007483 Plasmid A 0.4757 43 40420 940 0.798219 cir 0 0 0 1.9 0 0.3 0 0 29 48.3 3000 31000 2.0386 5.0489 0 0 0 0 0 0 4.5 2.1 3.1 1.9 Bacteria Gammaproteobacteria 13993 Nitrosococcus oceani ATCC 19707 CP000127 NC_007484 Chromosome 0.4968 2976 3481691 1169.9 0.846664 cir 2 2 2 2.8 2.2 0.2 45 45 2576 15.5 12000 1834000 2.295 4.95515 29 15 0 0 15 0 3.1 1.7 2.4 2.2 Bacteria Betaproteobacteria 52 Nitrosomonas europaea ATCC 19718 AL954747 NC_004757 Chromosome 0.4928 2574 2812094 1092.5 0.881816 cir 1 1 1 6.6 4.5 0.2 41 41 2181 18 24000 965000 1.1881 5.09223 20 9 0 1 10 0 3.5 1.4 2.8 1.6 Bacteria Betaproteobacteria 13913 Nitrosomonas eutropha C91 CP000450 NC_008344 Chromosome 0.5151 2444 2661057 1088.8 0.855701 cir 1 1 1 5.3 5.8 0.2 41 41 2097 16.5 143000 1284000 1.2181 4.99907 20 8 0 1 9 0 3.2 1.4 2.6 1.7 Bacteria Betaproteobacteria 13913 Nitrosomonas eutropha C91 CP000451 NC_008341 Plasmid1 0.502 55 65132 1184.2 0.885141 cir 0 0 0 0.1 0.7 0.3 0 0 55 0 44000 20000 1.4156 5.03642 0 0 0 0 0 0 4.9 2 2.8 2.4 Bacteria Betaproteobacteria 13913 Nitrosomonas eutropha C91 CP000452 NC_008342 Plasmid2 0.5032 52 55635 1069.9 0.811629 cir 0 0 0 1.6 0.6 0.2 0 0 34 52.9 14000 52000 1.4092 5.03118 0 0 0 0 0 0 4.2 1.7 4.3 2.1 Archaea Crenarchaeota 19265 Nitrosopumilus maritimus SCM1 CP000866 NC_010085 Chromosome 0.6583 1795 1645259 916.6 0.901651 cir 0 1 1 3 0.6 0.6 38 40 750000 0 2.7267 4.39994 10 10 0 0 10 0 10.1 3.4 5.3 5.9 Bacteria Betaproteobacteria 13912 Nitrosospira multiformis ATCC 25196 CP000103 NC_007614 Chromosome 1 0.4606 2757 3184243 1155 0.853568 cir 1 1 1 3.9 3.1 0.3 43 43 2429 13.5 3000 1551000 1.8342 5.17591 32 18 0 2 20 0 3.2 1.5 2.5 1.9 Bacteria Betaproteobacteria 13912 Nitrosospira multiformis ATCC 25196 CP000104 NC_007615 Plasmid 1 0.5046 17 18871 1110.1 0.832494 cir 0 0 0 0 0 0.1 0 0 8 112.5 16000 4000 2.1303 4.95152 0 0 0 0 0 0 5.6 1.3 3.9 1.7 Bacteria Betaproteobacteria 13912 Nitrosospira multiformis ATCC 25196 CP000105 NC_007616 Plasmid 2 0.5003 16 17036 1064.8 0.762503 cir 0 0 0 0 0 0 0 0 13 23.1 5000 12000 2.213 4.96076 0 0 0 0 0 0 4.5 1.1 3.5 2.8 Bacteria Betaproteobacteria 13912 Nitrosospira multiformis ATCC 25196 CP000106 NC_007617 Plasmid 3 0.5037 15 14159 943.9 0.705205 cir 0 0 0 0 0 0.4 0 0 12 25 8000 2000 1.8434 4.94085 0 0 0 0 0 0 6.1 0.9 3.9 2.9 Bacteria Actinobacteria 13117 Nocardia farcinica IFM 10152 AP006618 NC_006361 Chromosome 0.2917 5683 6021225 1059.5 0.902929 cir 3 3 3 3.9 2.4 1.2 53 54 4558 24.7 5845000 2527000 0.3095 5.92321 30 9 1 10 20 0 17.5 8.8 11.5 10.3 Bacteria Actinobacteria 13117 Nocardia farcinica IFM 10152 AP006619 NC_006362 Plasmid pNF1 0.3285 160 184026 1150.2 0.83649 cir 0 0 0 10.3 0.1 0.8 0 0 123 30.1 105000 10000 0.4603 5.75844 0 0 0 0 0 0 10.2 4.6 7.3 6.4 Bacteria Actinobacteria 13117 Nocardia farcinica IFM 10152 AP006620 NC_006363 Plasmid pNF2 0.3159 93 87093 936.5 0.867062 cir 0 0 0 3.6 0.2 1.4 0 0 56 66.1 61000 24000 0.3146 5.7859 0 0 0 0 0 0 13.8 6.4 9.1 8.5 Bacteria Actinobacteria 12738 Nocardioides sp. JS614 CP000509 NC_008699 Chromosome 0.2835 4645 4985871 1073.4 0.910995 cir 2 2 2 3.3 2.3 1.4 46 46 3996 16.2 2878000 4938000 0.4107 5.88753 46 34 1 9 44 0 17.6 10.2 12.9 10.8 Bacteria Actinobacteria 12738 Nocardioides sp. JS614 CP000508 NC_008697 Plasmid pNOCA01 0.3199 264 307814 1166 0.853168 cir 0 0 0 1 7.5 0.7 0 0 196 34.7 306000 105000 0.5799 5.71955 4 0 0 4 4 0 8.9 5.5 7.3 6.4 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 CP001037 NC_010628 Chromosome 0.5859 6087 8234322 1352.8 0.771593 cir 4 4 4 7.8 5.7 0.6 88 77 5932000 2558000 1.5134 4.62944 149 109 2 4 115 0 5.4 2.6 4.5 3.1 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 CP001038 NC_010631 Plasmid pNPUN01 0.5949 260 354564 1363.7 0.797052 cir 0 0 0 11.3 3.7 0.4 0 0 92000 199000 1.5151 4.58669 2 1 0 0 1 0 5 2.3 3.8 3.2 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 CP001039 NC_010632 Plasmid pNPUN02 0.5935 197 254918 1294 0.729901 cir 0 0 0 2.8 2 0.6 0 0 5000 82000 1.5672 4.59725 4 1 0 1 2 0 4.9 2.6 4.5 3.3 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 CP001040 NC_010630 Plasmid pNPUN03 0.5908 73 123028 1685.3 0.793104 cir 0 0 0 5.9 0.1 0.4 0 0 79000 117000 1.2908 4.59526 0 0 0 0 0 0 4.5 2.3 4.2 2.9 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 CP001041 NC_010633 Plasmid pNPUN04 0.5855 48 65940 1373.8 0.779178 cir 0 0 0 2.6 0.4 0.2 0 0 54000 30000 1.465 4.62614 1 1 0 0 1 0 5.9 2 4.8 3.7 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 CP001042 NC_010629 Plasmid pNPUN05 0.5767 25 26419 1056.8 0.72198 cir 0 0 0 4.6 0.2 0.3 0 0 25000 16000 1.5708 4.66376 2 0 0 0 0 0 4.8 2.6 6 3 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 BA000019 NC_003272 Chromosome 0.5865 5368 6413771 1194.8 0.821454 cir 4 4 4 5.3 3.1 0.7 48 47 4210 27.5 576000 4635000 1.4133 4.63309 122 92 3 2 97 0 5.3 2.5 4.2 3.1 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 BA000020 NC_003276 Plasmid pCC7120alpha 0.5949 386 408101 1057.3 0.823642 cir 0 0 0 11.6 5.5 0.3 0 0 253 52.6 241000 397000 1.4082 4.60063 1 0 0 0 0 0 5.1 2.4 3.9 3.1 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 AP003602 NC_003240 Plasmid pCC7120beta 0.5977 186 186614 1003.3 0.850585 cir 0 0 0 1.7 0 0.3 0 0 125 48.8 77000 133000 1.7078 4.58914 3 2 0 0 2 0 4.8 2.4 3.8 3.3 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 AP003603 NC_003267 Plasmid pCC7120gamma 0.5897 90 101965 1132.9 0.815113 cir 0 0 0 7.6 0.1 0.4 0 0 64 40.6 97000 38000 1.477 4.58906 0 0 0 0 0 0 5 2.5 4.5 2.8 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 AP003604 NC_003273 Plasmid pCC7120delta 0.5839 66 55414 839.6 0.723121 cir 0 0 0 9 0.5 0.4 19 22 29 127.6 17000 45000 1.3931 4.62623 3 0 0 0 0 0 6 2.5 4.9 2.6 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 AP003605 NC_003270 Plasmid pCC7120epsilon 0.5914 31 40340 1301.3 0.786961 cir 0 0 0 1.1 0.7 0.9 0 0 16 93.8 9000 24000 1.3981 4.60893 1 0 0 0 0 0 6.9 2.1 5.3 3.8 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 AP003606 NC_003241 Plasmid pCC7120zeta 0.5582 5 5584 1116.8 0.375 cir 0 0 0 0 0 2.1 0 0 3000 5000 0.394 4.79457 0 0 0 0 0 0 4.2 2.1 7.1 2.9 Bacteria Alphaproteobacteria 204 Novosphingobium aromaticivorans DSM 12444 CP000676 NC_009426 Plasmid pNL1 0.3775 182 184462 1013.5 0.891165 cir 0 0 0 1.4 0 0.4 0 0 128 42.2 159000 32000 0.6478 5.53858 0 0 0 0 0 0 5.2 3 4.5 3.3 Bacteria Alphaproteobacteria 204 Novosphingobium aromaticivorans DSM 12444 CP000248 NC_007794 Chromosome 0.3485 3324 3561584 1071.5 0.914661 cir 3 3 3 1.3 0.6 0.6 57 57 2777 19.7 120000 2023000 0.652 5.66739 30 17 0 1 22 4 8.3 4.2 5.6 5 Bacteria Alphaproteobacteria 204 Novosphingobium aromaticivorans DSM 12444 CP000677 NC_009427 Plasmid pNL2 0.341 431 487268 1130.6 0.941375 cir 0 0 0 2.9 0.6 0.6 0 0 389 10.8 227000 458000 0.6034 5.71565 3 4 0 0 4 0 8.7 4.7 6 5.4 Bacteria Firmicutes 284 Oceanobacillus iheyensis HTE831 BA000028 NC_004193 Chromosome 0.6432 3496 3630528 1038.5 0.843369 cir 8 7 7 3.1 2.4 0.4 69 69 2994 16.8 3630000 1772000 2.9694 4.46386 21 8 0 5 13 0 6.3 3.3 5 5 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 CP000758 NC_009667 Chromosome 1 0.4395 2731 2887297 1057.2 0.862877 cir 2 2 2 2 1.5 0.3 42 42 2273 20.1 295000 2219000 0.9402 5.3192 15 12 1 1 15 1 4.4 2 3.5 2.3 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 CP000760 NC_009669 Plasmid pOANT01 0.4384 161 170351 1058.1 0.844644 cir 0 0 0 3.2 5.3 0.2 0 0 127 26.8 103000 29000 1.2832 5.29969 0 0 0 0 1 1 4 2 3.2 2.5 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 CP000759 NC_009668 Chromosome 2 0.4378 1693 1895911 1119.9 0.888666 cir 2 2 2 1.2 1.1 0.3 16 16 1478 14.5 1876000 910000 0.8884 5.3267 12 7 0 0 9 2 4.1 2.1 3.6 2.4 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 CP000761 NC_009670 Plasmid pOANT02 0.4147 91 101491 1115.3 0.804367 cir 0 0 0 0 0 0.3 0 0 76 19.7 37000 6000 1.4425 5.37982 2 1 0 0 1 0 4.4 2.7 3.8 2.4 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 CP000762 NC_009671 Plasmid pOANT03 0.4573 86 93589 1088.2 0.831102 cir 0 0 0 1.8 6.8 0.3 0 0 76 13.2 78000 49000 0.9852 5.229 0 0 0 0 0 0 3.1 1.8 3 1.4 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 CP000763 NC_009672 Plasmid pOANT04 0.4472 37 57138 1544.3 0.896601 cir 0 0 0 10 0 0.4 0 0 34 8.8 54000 33000 0.8033 5.30087 0 0 0 0 0 0 5.8 2.5 4.2 3 Bacteria Firmicutes 317 Oenococcus oeni PSU-1 CP000411 NC_008528 Chromosome 0.6211 1691 1780517 1052.9 0.823193 cir 2 2 2 1.9 1.3 0.4 43 43 1384 22.2 1780000 969000 2.1513 4.57716 6 5 0 0 5 0 6.5 3.9 5.3 4.9 Bacteria Alphaproteobacteria 28805 Oligotropha carboxidovorans OM5 CP001196 NC_011386 Chromosome 0.376 3722 3745629 1006.3 0.873025 cir 1 1 1 2 1 0.5 45 49 372000 2051000 0.6716 5.59371 39 22 1 2 27 2 7.4 3.6 5.2 4.3 Bacteria Firmicutes 9615 Onion yellows phytoplasma OY-M AP006628 NC_005303 Chromosome 0.7226 754 860631 1141.4 0.728662 cir 2 2 2 27.7 24 1.3 32 32 621 21.4 860000 335000 3.6302 4.15281 0 0 0 0 0 0 22.8 12.7 14.2 20.2 Bacteria Other Bacteria 19989 Opitutus terrae PB90-1 CP001032 NC_010571 Chromosome 0.3466 4612 5957605 1291.8 0.885002 cir 1 1 1 3.2 1.6 0.7 65 65 984000 4241000 0.7478 5.7052 137 77 0 12 89 0 9.1 4.8 6.5 6.3 Bacteria Alphaproteobacteria 16180 Orientia tsutsugamushi str. Boryong AM494475 NC_009488 Chromosome 0.6947 2179 2127051 976.2 0.810872 lin 1 1 1 53.4 54.2 0.7 34 34 888 145.4 2.209 4.23141 6 3 0 0 3 0 9.6 5.8 7.6 7.9 Bacteria Alphaproteobacteria 18983 Orientia tsutsugamushi str. Ikeda AP008981 NC_010793 Chromosome 0.6949 1967 2008987 1021.3 0.747095 cir 1 1 1 50.8 50.8 0.6 34 34 17000 1373000 2.0808 4.2332 9 3 0 0 3 0 9.6 5.7 7.7 7.9 Bacteria Bacteroidetes/Chlorobi 13485 Parabacteroides distasonis ATCC 8503 CP000140 NC_009615 Chromosome 0.5494 3850 4811379 1249.7 0.900901 cir 7 7 7 3.9 2.7 0.3 83 83 3439 12 3610000 1263000 2.5437 4.81785 42 44 0 0 44 0 4.6 2 3.3 2.6 Bacteria Alphaproteobacteria 13020 Paracoccus denitrificans PD1222 CP000489 NC_008686 Chromosome 1 0.3329 2799 2852282 1019 0.903126 cir 2 2 2 3.5 3.9 1 43 43 2336 19.8 2852000 1325000 0.5691 5.73012 17 9 1 1 12 1 12.2 5.6 7.3 6.3 Bacteria Alphaproteobacteria 13020 Paracoccus denitrificans PD1222 CP000490 NC_008687 Chromosome 2 0.3318 1662 1730097 1041 0.904092 cir 1 1 1 3.9 0.6 0.8 0 10 1374 21 78000 1197000 0.623 5.7382 17 12 0 1 13 0 12 5.7 7.4 6.3 Bacteria Alphaproteobacteria 13020 Paracoccus denitrificans PD1222 CP000491 NC_008688 Plasmid 1 0.3286 616 653815 1061.4 0.924892 cir 0 0 0 0.6 0.4 0.9 0 0 551 11.8 526000 271000 0.5384 5.75851 5 4 0 0 4 0 11.7 5.5 7.4 6.1 Bacteria Alphaproteobacteria 17639 Parvibaculum lavamentivorans DS-1 CP000774 NC_009719 Chromosome 0.3767 3636 3914745 1076.7 0.900586 cir 1 1 1 1 3.8 0.5 45 45 1901000 3353000 1.3979 5.55077 42 34 2 0 37 1 7.7 3.5 4.9 4.6 Bacteria Gammaproteobacteria 39 Pasteurella multocida subsp. multocida str. Pm70 AE004439 NC_002663 Chromosome 0.596 2014 2257487 1120.9 0.889438 cir 7 6 6 2.6 1.7 0.3 0 57 1981 1.7 1671000 715000 1.7738 4.71496 11 7 0 2 9 0 4.8 2.6 4.1 3.5 Bacteria Gammaproteobacteria 350 Pectobacterium atrosepticum SCRI1043 BX950851 NC_004547 Chromosome 0.4903 4492 5064019 1127.3 0.864152 cir 8 7 7 4.6 3.2 0.3 76 76 3992 12.5 5062000 2553000 1.2382 5.12013 31 15 0 4 19 0 4 1.8 2.8 2.3 Bacteria Firmicutes 398 Pediococcus pentosaceus ATCC 25745 CP000422 NC_008525 Chromosome 0.6264 1755 1832387 1044.1 0.878067 cir 5 5 5 2.5 2 0.4 55 55 1500 17 1831000 954000 1.4065 4.53717 8 5 0 1 6 0 6 3.4 5.1 4.4 Bacteria Deltaproteobacteria 13337 Pelobacter carbinolicus DSM 2380 CP000142 NC_007498 Chromosome 0.4489 3353 3665893 1093.3 0.871175 cir 2 2 2 3.6 2.4 0.4 54 54 2759 21.5 2000 1882000 1.5192 5.23576 45 24 2 0 26 0 4.4 1.9 3.3 2.4 Bacteria Deltaproteobacteria 13384 Pelobacter propionicus DSM 2379 CP000482 NC_008609 Chromosome 0.4098 3576 4008000 1120.8 0.879583 cir 4 4 4 5.8 5.2 0.5 53 53 3044 17.5 8000 1903000 2.426 5.32055 78 44 3 2 49 0 5.9 2.5 3.9 3 Bacteria Deltaproteobacteria 13384 Pelobacter propionicus DSM 2379 CP000483 NC_008607 Plasmid pPRO1 0.519 195 202397 1037.9 0.854771 cir 0 0 0 0.5 0 0.2 0 0 142 37.3 173000 36000 2.2016 4.91829 5 2 0 0 2 0 3.3 1.6 3.2 2.1 Bacteria Deltaproteobacteria 13384 Pelobacter propionicus DSM 2379 CP000484 NC_008608 Plasmid pPRO2 0.4368 33 30722 931 0.89545 cir 0 0 0 62 0 0.1 0 0 23 43.5 4000 22000 0.6998 5.29244 0 0 0 0 0 0 5.7 2.2 3.3 3.6 Bacteria Bacteroidetes/Chlorobi 13012 Pelodictyon luteolum DSM 273 CP000096 NC_007512 Chromosome 0.4267 2083 2364842 1135.3 0.890099 cir 2 2 2 3.5 0.6 0.4 48 48 1821 14.4 2000 1207000 2.2643 5.26245 19 13 0 0 13 0 4.7 1.9 2.9 2.7 Bacteria Bacteroidetes/Chlorobi 13011 Pelodictyon phaeoclathratiforme BU-1 CP001110 NC_011060 Chromosome 0.5192 2707 3018238 1115 0.854727 cir 3 3 3 6.9 3.2 0.3 49 49 1000 1465000 2.9109 4.91198 19 10 0 0 10 0 4 1.7 2.6 2.1 Bacteria Firmicutes 19023 Pelotomaculum thermopropionicum SI AP009389 NC_009454 Chromosome 0.4704 2920 3025375 1036.1 0.851938 cir 2 2 2 6.1 4.9 0.4 51 51 1000 1419000 2.9404 5.04969 29 16 0 1 17 0 5.8 2.7 3.8 3.4 Bacteria Thermotogae 17679 Petrotoga mobilis SJ95 CP000879 NC_010003 Chromosome 0.6588 1898 2169548 1143.1 0.88913 cir 2 2 2 6.3 3.4 0.5 48 48 889000 143000 4.4392 4.32706 8 6 1 0 7 0 8.4 4.3 5.3 7.1 Bacteria Alphaproteobacteria 19931 Phenylobacterium zucineum HLK1 CP000747 NC_011144 Chromosome 0.2865 3529 3996255 1132.4 0.888696 cir 1 1 1 2.4 1.6 1.3 42 42 1769000 3141000 0.6146 5.83971 59 36 2 0 44 6 17.6 10.2 10.7 11.1 Bacteria Alphaproteobacteria 19931 Phenylobacterium zucineum HLK1 CP000748 NC_011143 Plasmid unnamed 0.3146 325 382976 1178.4 0.801063 cir 0 0 0 9.8 6.4 0.7 0 0 118000 252000 0.6899 5.7403 6 3 0 0 3 0 9.8 6.8 8 7.3 Bacteria Gammaproteobacteria 13128 Photobacterium profundum SS9 CR354531 NC_006370 Chromosome 1 0.5803 3416 4085304 1195.9 0.821237 cir 17 14 14 8 6.6 0.3 145 150 3035 12.6 4085000 2066000 1.1914 4.74126 39 18 0 2 20 0 3.9 2.1 3.8 2.7 Bacteria Gammaproteobacteria 13128 Photobacterium profundum SS9 CR354532 NC_006371 Chromosome 2 0.5878 1997 2237943 1120.7 0.802608 cir 2 1 1 12 10.6 0.2 19 19 1579 26.5 0 1070000 1.228 4.71501 27 12 0 1 13 0 3.7 2.2 3.7 2.7 Bacteria Gammaproteobacteria 13128 Photobacterium profundum SS9 CR377818 NC_005871 Plasmid pPBPR1 0.5597 67 80033 1194.5 0.73381 cir 0 0 0 1.4 2 0.3 0 0 42 59.5 31000 59000 1.933 4.81426 0 0 0 0 0 0 7.2 2.2 3.5 2.4 Bacteria Gammaproteobacteria 9605 Photorhabdus luminescens subsp. laumondii TTO1 BX470251 NC_005126 Chromosome 0.5717 4905 5688987 1159.8 0.835551 cir 8 7 7 17.7 9.3 0.3 85 85 4069 20.5 43000 2633000 1.467 4.77726 24 12 0 2 14 0 4.8 2.6 3.8 3.4 Archaea Euryarchaeota 10641 Picrophilus torridus DSM 9790 AE017261 NC_005877 Chromosome 0.6403 1535 1545895 1007.1 0.913722 cir 0 1 1 0.5 0.5 0.6 44 47 1323 16 650000 1414000 1.6851 4.53599 0 0 0 0 0 0 9.9 4.7 6.5 6.6 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000530 NC_008757 Plasmid pPNAP01 0.4245 305 353291 1158.3 0.838436 cir 0 0 0 1 2.6 0.4 0 0 224 36.2 140000 26000 0.7807 5.3329 0 0 0 0 0 0 5.3 2.4 4.4 3 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000529 NC_008781 Chromosome 0.3747 4084 4410291 1079.9 0.901217 cir 2 2 2 3.4 2.5 0.6 48 48 3505 16.5 4390000 2072000 0.5927 5.56801 59 46 0 6 52 0 9.1 4.1 6 4.6 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000531 NC_008758 Plasmid pPNAP02 0.4199 161 190172 1181.2 0.782649 cir 0 0 0 4.1 1.5 0.4 1 1 99 62.6 115000 47000 0.7525 5.37474 1 2 0 0 2 0 6 2.4 4.2 2.7 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000532 NC_008759 Plasmid pPNAP03 0.4311 155 171866 1108.8 0.766906 cir 0 0 0 1.8 2.1 0.3 1 1 110 40.9 89000 152000 1.0159 5.26239 0 0 0 0 0 0 4.2 2.6 3.9 2.6 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000533 NC_008760 Plasmid pPNAP04 0.4101 136 143747 1057 0.753845 cir 0 0 0 9.1 4.1 0.3 1 1 98 38.8 32000 89000 0.7395 5.40221 0 0 0 0 0 0 6 3.1 3.6 3.4 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000534 NC_008761 Plasmid pPNAP05 0.4044 52 58808 1130.9 0.808921 cir 0 0 0 0.6 0 0.5 0 0 36 44.4 14000 52000 0.6275 5.40483 0 0 0 0 0 0 6.4 3.4 4.7 3 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000535 NC_008762 Plasmid pPNAP06 0.4433 20 21611 1080.5 0.759845 cir 0 0 0 0.5 0 0 0 0 15 33.3 10000 17000 0.981 5.27186 0 0 0 0 0 0 8 2.3 3.8 2.8 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000536 NC_008763 Plasmid pPNAP07 0.4295 11 9898 899.8 0.610932 cir 0 0 0 0 0 0.8 0 0 6 83.3 4000 8000 0.6668 5.27139 0 0 0 0 0 0 9 2.2 5.2 6.2 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 CP000537 NC_008764 Plasmid pPNAP08 0.4787 5 6459 1291.8 0.770708 cir 0 0 0 0 0 0 0 0 3 66.7 2000 0 2.3069 5.07976 0 0 0 0 0 0 13.8 1.5 11.3 3 Bacteria Betaproteobacteria 13121 Polaromonas sp. JS666 CP000316 NC_007948 Chromosome 0.3753 4817 5200264 1079.6 0.878455 cir 1 1 1 3.1 2.4 0.7 44 44 4077 18.2 5182000 2594000 0.685 5.55159 65 41 1 6 48 0 7.4 3.4 5.1 3.9 Bacteria Betaproteobacteria 13121 Polaromonas sp. JS666 CP000317 NC_007949 Plasmid 1 0.4309 326 360405 1105.5 0.842069 cir 0 0 0 2.1 0.8 0.2 0 0 235 38.7 124000 11000 0.8676 5.30485 0 0 0 0 0 0 4.2 1.9 3 2.4 Bacteria Betaproteobacteria 13121 Polaromonas sp. JS666 CP000318 NC_007950 Plasmid 2 0.4028 310 338007 1090.3 0.837139 cir 0 0 0 2 3.3 0.4 0 0 234 32.5 126000 276000 0.7287 5.4237 0 0 0 0 0 0 5.4 2.6 4.1 3.6 Bacteria Betaproteobacteria 16679 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 CP000655 NC_009379 Chromosome 0.5517 2077 2159490 1039.7 0.927305 cir 1 1 1 1.4 0.2 0.2 38 38 1844 12.6 2156000 975000 1.074 4.79098 8 8 0 0 8 0 3.6 1.6 2.6 2.1 Bacteria Betaproteobacteria 19991 Polynucleobacter necessarius subsp. necessarius STIR1 CP001010 NC_010531 Chromosome 0.5444 1508 1560469 1034.8 0.779973 cir 1 1 1 0.2 0 0.3 37 37 1000 753000 0.9583 4.83258 4 2 0 0 2 0 3.4 1.5 2.4 2 Bacteria Bacteroidetes/Chlorobi 19051 Porphyromonas gingivalis ATCC 33277 AP009380 NC_010729 Chromosome 0.5164 2090 2354886 1126.7 0.859793 cir 4 4 4 9.2 9.5 0.2 53 53 2148000 1065000 3.2162 4.91452 7 1 0 0 1 0 4.8 2.1 3.9 2.6 Bacteria Bacteroidetes/Chlorobi 48 Porphyromonas gingivalis W83 AE015924 NC_002950 Chromosome 0.5171 1909 2343476 1227.6 0.824028 cir 4 4 4 7.9 8.4 0.3 53 53 1587 20.3 2329000 1168000 3.1695 4.91008 7 2 0 0 2 0 4.6 1.9 3.8 2.6 Bacteria Cyanobacteria 13548 Prochlorococcus marinus str. AS9601 CP000551 NC_008816 Chromosome 0.6868 1921 1669886 869.3 0.906495 cir 1 1 1 1.1 0.2 0.6 38 39 1348 42.5 1000 831000 3.3042 4.22076 5 2 0 0 2 0 10.7 7.4 8.4 9.6 Bacteria Cyanobacteria 13551 Prochlorococcus marinus str. MIT 9211 CP000878 NC_009976 Chromosome 0.6199 1855 1688963 910.5 0.896515 cir 1 1 1 1.2 0.1 0.3 40 40 1000 810000 2.7472 4.42168 5 2 0 0 2 0 5.2 2.8 3.9 3.8 Bacteria Cyanobacteria 18633 Prochlorococcus marinus str. MIT 9215 CP000825 NC_009840 Chromosome 0.6885 1983 1738790 876.8 0.891623 cir 1 1 1 1 0.3 0.6 36 39 1000 872000 3.3343 4.21537 5 2 0 0 2 0 11.1 7.6 8.6 9.9 Bacteria Cyanobacteria 15746 Prochlorococcus marinus str. MIT 9301 CP000576 NC_009091 Chromosome 0.6866 1907 1641879 861 0.907263 cir 1 1 1 0.5 0.2 0.5 37 37 1340 42.3 1000 829000 3.3719 4.22024 6 3 0 0 3 0 10.8 7.2 8.3 9.5 Bacteria Cyanobacteria 13496 Prochlorococcus marinus str. MIT 9303 CP000554 NC_008820 Chromosome 0.4999 2997 2682675 895.1 0.840264 cir 2 2 2 4.1 2.1 0.3 43 44 1883 59.2 0 1546000 1.4203 4.93928 8 4 0 0 4 0 4 1.5 2.7 2.2 Bacteria Cyanobacteria 13910 Prochlorococcus marinus str. MIT 9312 CP000111 NC_007577 Chromosome 0.6879 1809 1709204 944.8 0.890919 cir 1 1 1 0.9 0.2 0.6 39 39 1381 31 1708000 858000 3.3181 4.21578 6 3 0 0 3 0 10.9 7.5 8.5 9.5 Bacteria Cyanobacteria 220 Prochlorococcus marinus str. MIT 9313 BX548175 NC_005071 Chromosome 0.4926 2273 2410873 1060.7 0.817652 cir 2 2 2 2.8 2.1 0.3 44 45 1721 32.1 0 793000 1.3771 4.96535 9 3 0 0 3 0 3.8 1.4 2.7 2.1 Bacteria Cyanobacteria 13617 Prochlorococcus marinus str. MIT 9515 CP000552 NC_008817 Chromosome 0.6921 1906 1704176 894.1 0.884577 cir 1 1 1 0.7 0.2 0.5 37 37 1344 41.8 1701000 851000 3.3726 4.20257 5 3 0 0 3 0 11.3 7.7 8.8 10.2 Bacteria Cyanobacteria 15660 Prochlorococcus marinus str. NATL1A CP000553 NC_008819 Chromosome 0.6502 2193 1864731 850.3 0.868522 cir 1 1 1 1.8 0.8 0.3 38 38 1388 58 0 935000 3.1033 4.34177 6 3 0 0 3 0 7.3 4.3 5.6 6 Bacteria Cyanobacteria 13911 Prochlorococcus marinus str. NATL2A CP000095 NC_007335 Chromosome 0.6488 1890 1842899 975.1 0.851089 cir 1 1 1 2.7 1.5 0.4 38 38 1368 38.2 1293000 333000 3.0957 4.34727 6 3 0 0 3 0 7.4 4.2 5.5 5.7 Bacteria Cyanobacteria 419 Prochlorococcus marinus subsp. marinus str. CCMP1375 AE017126 NC_005042 Chromosome 0.6356 1882 1751080 930.4 0.887013 cir 1 1 1 0.8 0.3 0.4 40 40 1376 36.8 0 867000 2.8215 4.38056 5 3 0 0 3 0 6 3.3 4.4 4.3 Bacteria Cyanobacteria 213 Prochlorococcus marinus subsp. pastoris str. CCMP1986 BX548174 NC_005072 Chromosome 0.692 1716 1657990 966.2 0.880452 cir 1 1 1 0.8 0.3 0.6 37 37 1325 29.5 1000 856000 3.3574 4.19904 6 3 0 0 3 0 11.5 7.8 8.9 10.2 Bacteria Actinobacteria 12460 Propionibacterium acnes KPA171202 AE017283 NC_006085 Chromosome 0.3999 2297 2560265 1114.6 0.891785 cir 3 3 3 1 1.1 0.3 45 45 1987 15.6 2000 1320000 0.7521 5.41175 12 4 1 7 12 0 4.6 2.1 3.2 2.8 Bacteria Bacteroidetes/Chlorobi 12749 Prosthecochloris aestuarii DSM 271 CP001108 NC_011059 Chromosome 0.499 2263 2512923 1110.4 0.876137 cir 1 1 1 3.8 2.1 0.6 46 46 3000 1189000 2.5166 4.9984 11 6 0 0 6 0 4.2 1.4 2.6 2.3 Bacteria Bacteroidetes/Chlorobi 12749 Prosthecochloris aestuarii DSM 271 CP001109 NC_011061 Plasmid pPAES01 0.4952 64 66772 1043.3 0.797355 cir 0 0 0 6 0 0.2 0 0 63000 35000 2.6074 5.02105 0 0 0 0 0 0 4.2 1.7 3.8 2.2 Bacteria Gammaproteobacteria 12624 Proteus mirabilis HI4320 AM942760 NC_010555 Plasmid pHI4320 0.6379 55 36289 659.8 0.89038 cir 0 0 0 0.7 0.7 0.8 0 0 2000 26000 3.045 4.50896 0 0 0 0 0 0 8.3 4.2 6.7 5.5 Bacteria Gammaproteobacteria 12624 Proteus mirabilis HI4320 AM942759 NC_010554 Chromosome 0.611 3685 4063606 1102.7 0.853921 cir 8 7 7 3.6 2 0.4 83 83 3357000 1388000 1.6391 4.62134 22 11 0 2 13 0 5.7 3.8 5.4 4.6 Bacteria Gammaproteobacteria 13454 Pseudoalteromonas atlantica T6c CP000388 NC_008228 Chromosome 0.5538 4281 5187005 1211.6 0.863378 cir 5 5 5 2.1 1.8 0.3 62 62 3833 11.7 5179000 2553000 0.8348 4.83777 70 40 0 1 41 0 3.2 1.8 2.6 2.3 Bacteria Gammaproteobacteria 15713 Pseudoalteromonas haloplanktis TAC125 CR954246 NC_007481 Chromosome I 0.5977 2941 3214944 1093.1 0.870762 cir 10 9 9 3.1 2.1 0.3 106 106 2492 18 0 1623000 0.6082 4.65847 50 27 0 1 28 0 4.9 2.5 4.2 3.4 Bacteria Gammaproteobacteria 15713 Pseudoalteromonas haloplanktis TAC125 CR954247 NC_007482 Chromosome II 0.6063 546 635328 1163.6 0.872981 cir 0 0 0 1 0.5 0.4 0 0 443 23.3 111000 321000 0.5707 4.62942 7 4 0 0 4 0 5.2 3 4.5 3.5 Bacteria Gammaproteobacteria 31101 Pseudomonas aeruginosa LESB58 FM209186 NC_011770 Chromosome 0.337 5965 6601757 1106.7 0.888531 cir 4 4 4 4.4 2.2 0.8 67 68 6593000 3395000 0.6926 5.64949 81 50 0 3 53 0 11.9 5.4 7.5 6.3 Bacteria Gammaproteobacteria 16720 Pseudomonas aeruginosa PA7 CP000744 NC_009656 Chromosome 0.3355 6286 6588339 1048.1 0.894046 cir 4 4 4 3.8 3.2 0.9 63 65 5081 23.7 6582000 3227000 0.6955 5.65536 92 55 0 2 57 0 12.4 5.8 7.9 6.7 Bacteria Gammaproteobacteria 331 Pseudomonas aeruginosa PAO1 AE004091 NC_002516 Chromosome 0.3344 5568 6264404 1125.1 0.892782 cir 4 4 4 3.6 2.4 0.9 63 64 4921 13.1 6256000 2443000 0.6857 5.65989 83 50 0 3 53 0 12.1 5.6 7.6 6.4 Bacteria Gammaproteobacteria 386 Pseudomonas aeruginosa UCBPP-PA14 CP000438 NC_008463 Chromosome 0.3371 5892 6537648 1109.6 0.892878 cir 4 4 4 3.7 2.4 0.9 59 63 5094 15.7 6528000 3174000 0.7047 5.64805 84 51 0 3 54 0 12 5.5 7.5 6.3 Bacteria Gammaproteobacteria 16800 Pseudomonas entomophila L48 CT573326 NC_008027 Chromosome 0.3584 5168 5888780 1139.5 0.889505 cir 8 7 7 6.1 4.3 0.7 78 78 4343 19 5887000 2910000 0.4594 5.58536 80 49 0 2 51 0 10 3.7 6.6 4.5 Bacteria Gammaproteobacteria 327 Pseudomonas fluorescens Pf-5 CP000076 NC_004129 Chromosome 0.367 6138 7074893 1152.6 0.88658 cir 6 5 5 3.8 2.2 0.6 71 71 5310 15.6 7047000 3474000 0.5275 5.51836 113 64 0 4 68 0 9.1 3.4 5.8 4 Bacteria Gammaproteobacteria 12 Pseudomonas fluorescens Pf0-1 CP000094 NC_007492 Chromosome 0.3948 5736 6438405 1122.5 0.898641 cir 7 6 6 3.9 2.8 0.5 73 73 4912 16.8 6433000 3157000 0.5469 5.48743 101 61 0 2 63 0 6.8 2.7 4.3 3.4 Bacteria Gammaproteobacteria 17457 Pseudomonas mendocina ymp CP000680 NC_009439 Chromosome 0.3532 4594 5072807 1104.2 0.89394 cir 4 4 4 3.6 2.5 0.8 67 67 3998 14.9 14000 2452000 0.5648 5.59917 74 39 0 5 44 0 10.7 4.1 6.9 4.8 Bacteria Gammaproteobacteria 13909 Pseudomonas putida F1 CP000712 NC_009512 Chromosome 0.3814 5252 5959964 1134.8 0.8863 cir 7 6 6 4.5 2.9 0.6 76 76 4523 16.1 0 2795000 0.4802 5.50164 97 59 0 3 63 1 7.3 2.9 5.2 3.3 Bacteria Gammaproteobacteria 17629 Pseudomonas putida GB-1 CP000926 NC_010322 Chromosome 0.3806 5409 6078430 1123.8 0.893529 cir 8 7 7 3.5 2.7 0.6 74 74 64000 2923000 0.4617 5.50618 92 58 0 3 62 1 7.5 2.9 5 3.5 Bacteria Gammaproteobacteria 267 Pseudomonas putida KT2440 AE015451 NC_002947 Chromosome 0.3848 5350 6181863 1155.5 0.865795 cir 8 7 7 4.6 3.8 0.5 0 74 4604 16.2 8000 3731000 0.5149 5.48445 89 54 0 3 58 1 7.1 2.8 4.9 3.4 Bacteria Gammaproteobacteria 16817 Pseudomonas stutzeri A1501 CP000304 NC_009434 Chromosome 0.3612 4128 4567418 1106.4 0.890748 cir 4 4 4 3.3 3.1 0.6 61 61 3606 14.5 13000 2270000 0.5151 5.58205 77 54 0 3 57 0 8.8 3.9 5.8 4.6 Bacteria Gammaproteobacteria 12416 Pseudomonas syringae pv. phaseolicola 1448A CP000059 NC_007274 Large plasmid 0.4589 127 131950 1039 0.665972 cir 0 0 0 29.6 29.1 0.1 0 0 83 53 12000 67000 0.7571 5.1849 0 0 0 0 0 0 4.6 1.4 4.3 2.2 Bacteria Gammaproteobacteria 12416 Pseudomonas syringae pv. phaseolicola 1448A CP000058 NC_005773 Chromosome 0.4198 4984 5928787 1189.6 0.84027 cir 6 5 5 5.8 4.8 0.3 64 62 4367 14.1 5896000 3255000 0.4887 5.37031 85 56 0 2 58 0 5.1 2.1 3.8 2.5 Bacteria Gammaproteobacteria 12416 Pseudomonas syringae pv. phaseolicola 1448A CP000060 NC_007275 Small plasmid 0.4404 60 51711 861.9 0.873393 cir 0 0 0 0.4 0.6 0.3 0 0 42 42.9 46000 20000 1.0365 5.25167 0 0 0 0 0 0 4.3 2.1 3.5 2.4 Bacteria Gammaproteobacteria 323 Pseudomonas syringae pv. syringae B728a CP000075 NC_007005 Chromosome 0.4077 5136 6093698 1186.5 0.880082 cir 6 5 5 5.5 3.3 0.4 64 64 4443 15.6 203000 3261000 0.5002 5.41912 89 58 0 2 61 1 5.5 2.4 4.2 2.8 Bacteria Gammaproteobacteria 359 Pseudomonas syringae pv. tomato str. DC3000 AE016853 NC_004578 Chromosome 0.416 5476 6397126 1168.2 0.850818 cir 6 5 5 7 6.2 0.4 63 64 4651 17.7 229000 3208000 0.4959 5.388 85 57 0 2 60 1 5.2 2.3 3.7 2.6 Bacteria Gammaproteobacteria 359 Pseudomonas syringae pv. tomato str. DC3000 AE016854 NC_004632 Plasmid pDC3000B 0.4383 70 67473 963.9 0.795222 cir 0 0 0 2.5 2.2 0.2 0 0 46 52.2 1000 38000 0.8581 5.27069 0 0 0 0 0 0 3.7 1.5 3.5 2.2 Bacteria Gammaproteobacteria 359 Pseudomonas syringae pv. tomato str. DC3000 AE016855 NC_004633 Plasmid pDC3000A 0.4485 68 73661 1083.2 0.8271 cir 0 0 0 2.4 0.2 0.1 0 0 49 38.8 6000 43000 0.7304 5.22885 0 0 0 0 0 0 3.1 1.5 3.4 2.3 Bacteria Gammaproteobacteria 9633 Psychrobacter arcticus 273-4 CP000082 NC_007204 Chromosome 0.572 2147 2650701 1234.6 0.812293 cir 4 4 4 5.1 4.6 0.5 49 49 1887 13.8 1000 1336000 0.5757 4.78396 16 9 0 1 10 0 4.6 2 4.2 2.9 Bacteria Gammaproteobacteria 13920 Psychrobacter cryohalolentis K5 CP000324 NC_007968 Plasmid 1 0.6174 44 41221 936.8 0.711142 cir 0 0 0 1.2 0 0.2 0 0 40 10 16000 39000 1.1208 4.52531 0 0 0 0 0 0 5.5 2.6 5.5 4.3 Bacteria Gammaproteobacteria 13920 Psychrobacter cryohalolentis K5 CP000323 NC_007969 Chromosome 0.5771 2467 3059876 1240.3 0.831638 cir 4 4 4 1.9 2.4 0.4 48 48 2269 8.7 1000 1690000 0.5675 4.75957 21 12 0 0 12 0 4.5 2.2 3.8 2.8 Bacteria Gammaproteobacteria 15759 Psychrobacter sp. PRwf-1 CP000714 NC_009516 Plasmid pRWF101 0.6172 14 13956 996.9 0.738392 cir 0 0 0 0 0 0 0 0 8 75 3000 12000 0.9745 4.50087 0 0 0 0 0 0 6.8 2.9 4.3 3.2 Bacteria Gammaproteobacteria 15759 Psychrobacter sp. PRwf-1 CP000713 NC_009524 Chromosome 0.5513 2370 2978976 1257 0.830523 cir 5 5 5 5.9 3.2 0.5 57 57 2171 9.2 1000 1368000 0.632 4.80945 16 11 0 1 12 0 4.7 1.8 3.4 2.4 Bacteria Gammaproteobacteria 15759 Psychrobacter sp. PRwf-1 CP000715 NC_009517 Plasmid pRWF102 0.5957 1 2117 2117 0.535664 cir 0 0 0 0 0 0 0 0 1 0 1000 0 1.5116 4.68648 0 0 0 0 0 0 6.5 3.1 5.6 6.7 Bacteria Gammaproteobacteria 16187 Psychromonas ingrahamii 37 CP000510 NC_008709 Chromosome 0.5991 3545 4559598 1286.2 0.775963 cir 12 10 10 8.2 5.3 0.4 86 86 3154 12.4 0 2334000 1.4746 4.65463 34 20 0 0 20 0 5.5 2.8 4.3 3.5 Archaea Crenarchaeota 172 Pyrobaculum aerophilum str. IM2 AE009441 NC_003364 Chromosome 0.4864 2605 2222430 853.1 0.884068 cir 0 1 1 3.2 3.2 0.3 36 42 1768 47.3 115000 818000 3.2823 4.93023 0 0 0 0 0 0 4.6 1.8 2.5 2.9 Archaea Crenarchaeota 15582 Pyrobaculum arsenaticum DSM 13514 CP000660 NC_009376 Chromosome 0.4495 2298 2121076 923 0.86415 cir 0 1 1 1.3 1.3 0.4 41 43 1658 38.6 1829000 441000 3.021 5.05436 0 0 0 0 0 0 5.4 2 2.7 3.3 Archaea Crenarchaeota 18111 Pyrobaculum calidifontis JCM 11548 CP000561 NC_009073 Chromosome 0.4285 2149 2009313 935 0.903491 cir 0 1 1 1.4 1.4 0.6 22 24 1683 27.7 1451000 831000 3.2539 5.12067 0 0 0 0 0 0 6.6 1.9 2.8 3.6 Archaea Crenarchaeota 16743 Pyrobaculum islandicum DSM 4184 CP000504 NC_008701 Chromosome 0.504 1978 1826402 923.4 0.868234 cir 0 1 1 5.1 5.2 0.4 45 45 1484 33.3 832000 134000 3.1715 4.83953 0 0 0 0 0 0 5.2 2 2.7 3.5 Archaea Euryarchaeota 179 Pyrococcus abyssi GE5 AL096836 NC_000868 Chromosome 0.5529 1784 1765118 989.4 0.000373913 cir 2 1 1 0.7 0.5 0.4 46 46 1639 8.8 123000 1316000 5.2083 4.57723 2 0 0 0 0 0 4.7 1.9 2.2 3.4 Archaea Euryarchaeota 179 Pyrococcus abyssi GE5 U49503 NC_001773 Plasmid pGT5 0.5656 0 3444 0 cir 0 0 0 0 0 1.6 0 0 1000 0 2.9617 4.56672 3 2.6 3.1 3.5 Archaea Euryarchaeota 287 Pyrococcus furiosus DSM 3638 AE009950 NC_003413 Chromosome 0.5923 2065 1908256 924.1 0.909547 cir 2 1 1 2.3 1.8 0.4 46 46 1775 16.3 24000 830000 5.9472 4.44073 0 0 0 0 0 0 5.6 2.3 2.7 4.1 Archaea Euryarchaeota 207 Pyrococcus horikoshii OT3 BA000001 NC_000961 Chromosome 0.5812 2061 1738505 843.5 0.906903 cir 2 1 1 0.5 0.8 0.4 46 47 1572 31.1 111000 706000 5.6966 4.47264 2 0 0 0 0 0 5.2 2.2 2.5 4.1 Bacteria Betaproteobacteria 13603 Ralstonia eutropha H16 AM260479 NC_008313 Chromosome 1 0.3353 3651 4052032 1109.8 0.87696 cir 3 3 3 2.5 1.4 0.9 52 53 3185 14.6 4007000 2033000 0.5227 5.74568 39 22 0 4 26 0 12.2 6.2 7.7 6.8 Bacteria Betaproteobacteria 13603 Ralstonia eutropha H16 AM260480 NC_008314 Chromosome 2 0.3322 2555 2912490 1139.9 0.884593 cir 2 2 2 2.6 1.2 0.8 7 7 2168 17.9 1000 1461000 0.4808 5.76431 41 19 0 1 20 0 11.3 6.2 8 6.6 Bacteria Betaproteobacteria 13603 Ralstonia eutropha H16 AY305378 NC_005241 Megaplasmid pHG1 0.3769 420 452156 1076.6 0.78844 cir 0 0 0 3.7 4.4 0.5 0 1 451000 213000 0.746 5.55038 2 2 0 1 3 0 6.3 3.6 4.8 3.8 Bacteria Betaproteobacteria 10646 Ralstonia eutropha JMP134 CP000092 NC_007336 Megaplasmid 0.3941 512 634917 1240.1 0.769754 cir 0 0 0 4.9 3.7 0.3 1 1 423 21 306000 607000 0.7623 5.47891 2 1 0 0 1 0 5 2.6 3.7 3.1 Bacteria Betaproteobacteria 10646 Ralstonia eutropha JMP134 CP000091 NC_007348 Chromosome 2 0.3502 2407 2726152 1132.6 0.881141 cir 3 3 3 2.5 2.3 0.6 11 11 2041 17.9 2121000 767000 0.4624 5.71438 38 20 0 2 22 0 8.3 4.7 5.8 5.2 Bacteria Betaproteobacteria 10646 Ralstonia eutropha JMP134 CP000093 NC_007337 Plasmid 1 0.3534 88 87688 996.5 0.917423 cir 0 0 0 0.9 5.2 0.9 0 0 81 8.6 73000 13000 0.9865 5.64313 0 0 0 0 0 0 10.9 5 7.2 6.4 Bacteria Betaproteobacteria 10646 Ralstonia eutropha JMP134 CP000090 NC_007347 Chromosome 1 0.3532 3439 3806533 1106.9 0.888247 cir 3 3 3 2 0.9 0.7 54 54 3003 14.5 3740000 1845000 0.5129 5.69507 37 22 0 4 26 0 8.9 4.8 5.8 5.4 Bacteria Betaproteobacteria 250 Ralstonia metallidurans CH34 CP000352 NC_007973 Chromosome 1 0.3618 3601 3928089 1090.8 0.894539 cir 2 2 2 3.3 3 0.7 54 54 3142 14.6 3849000 1877000 0.5576 5.65247 41 27 0 3 30 0 7.9 4 5.1 4.6 Bacteria Betaproteobacteria 250 Ralstonia metallidurans CH34 CP000353 NC_007974 Chromosome 2 0.364 2313 2580084 1115.5 0.882717 cir 2 2 2 2.7 2.9 0.6 8 8 1904 21.5 2440000 937000 0.5577 5.64593 49 22 0 2 24 0 7.2 3.5 5 4.3 Bacteria Betaproteobacteria 250 Ralstonia metallidurans CH34 CP000354 NC_007971 Plasmid 1 0.3987 241 233720 969.8 0.796611 cir 0 0 0 2.3 2.7 0.3 0 0 161 49.7 70000 147000 0.8343 5.44355 2 2 0 0 2 0 4.6 2.6 3.7 2.8 Bacteria Betaproteobacteria 250 Ralstonia metallidurans CH34 CP000355 NC_007972 Plasmid 2 0.395 164 171459 1045.5 0.87702 cir 0 0 0 0.3 0.1 0.2 0 0 135 21.5 12000 125000 0.8253 5.46499 0 0 0 0 0 0 4.9 2.6 3.8 3.1 Bacteria Betaproteobacteria 17631 Ralstonia pickettii 12J CP001068 NC_010682 Chromosome 1 0.3657 3709 3942557 1063 0.881783 cir 2 2 2 3.2 4.4 0.6 51 51 3855000 1830000 0.5472 5.65381 47 29 0 3 32 0 7.9 3.9 5.2 4.7 Bacteria Betaproteobacteria 17631 Ralstonia pickettii 12J CP001070 NC_010683 Plasmid pRPIC01 0.3959 90 80934 899.3 0.857378 cir 0 0 0 0 0 0.2 0 0 47000 79000 0.6697 5.48952 1 1 0 0 1 0 4.5 3.1 5.2 3.1 Bacteria Betaproteobacteria 17631 Ralstonia pickettii 12J CP001069 NC_010678 Chromosome 2 0.355 1153 1302238 1129.4 0.880756 cir 1 1 1 2 0.6 0.6 4 4 24000 663000 0.4661 5.70877 17 8 0 3 11 0 8.1 4.1 5.6 4.9 Bacteria Betaproteobacteria 13 Ralstonia solanacearum GMI1000 AL646052 NC_003295 Chromosome 0.3296 3441 3716413 1080 0.879369 cir 3 3 3 3.2 2.7 0.9 54 54 2874 19.7 340000 1967000 0.5013 5.78931 36 17 0 4 21 0 13 6.6 8 7.7 Bacteria Betaproteobacteria 13 Ralstonia solanacearum GMI1000 AL646053 NC_003296 Plasmid pGMI1000MP 0.3313 1679 2094509 1247.5 0.867428 cir 1 1 1 9.4 3.2 0.8 3 3 1348 24.6 4000 1175000 0.4639 5.78123 22 14 0 1 15 0 12.8 6.3 8 8 Bacteria Actinobacteria 19227 Renibacterium salmoninarum ATCC 33209 CP000910 NC_010168 Chromosome 0.4373 3507 3155250 899.7 0.902006 cir 2 2 2 4.1 3.7 0.2 45 45 113000 1316000 0.4833 5.26604 19 7 1 8 16 0 3.6 1.9 3.4 2.4 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 CP000133 NC_007761 Chromosome 0.3873 4067 4381608 1077.4 0.867402 cir 3 3 3 1.9 1.9 0.5 50 50 3377 20.4 4180000 2204000 1.0887 5.50425 42 27 2 0 31 2 7.1 3.2 5.1 3.7 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 CP000134 NC_007762 Plasmid p42a 0.42 182 194229 1067.2 0.790706 cir 0 0 0 5.6 9.5 0.3 0 0 156 16.7 25000 102000 1.0719 5.35502 1 1 0 0 1 0 3.8 2.2 3.7 2.8 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 CP000135 NC_007763 Plasmid p42b 0.3819 165 184338 1117.2 0.916577 cir 0 0 0 0.1 0.1 0.5 0 0 142 16.2 64000 181000 0.9965 5.53282 0 0 0 0 0 0 6.2 3.1 5.1 3.3 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 CP000136 NC_007764 Plasmid p42c 0.3848 234 250948 1072.4 0.901908 cir 0 0 0 0.4 0.1 0.4 0 0 205 14.1 30000 114000 0.9412 5.51821 3 2 0 1 3 0 5.9 3 5.2 3.6 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 U80928 NC_004041 Symbiotic plasmid p42d 0.4218 336 371254 1104.9 0.767383 cir 0 0 0 7.6 4.8 0.2 0 0 268 25.4 42000 212000 1.0421 5.34449 1 0 0 0 0 0 3.8 2.3 3.5 2.3 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 CP000137 NC_007765 Plasmid p42e 0.3833 459 505334 1100.9 0.890785 cir 0 0 0 0.5 0.3 0.5 0 0 389 18 452000 257000 1.1189 5.52201 3 3 0 0 3 0 7.1 3.4 5.4 4 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 CP000138 NC_007766 Plasmid p42f 0.3878 573 642517 1121.3 0.869837 cir 0 0 0 1 0.5 0.4 0 0 472 21.4 617000 169000 1.07 5.49544 12 6 1 0 9 2 5.8 3.1 5 3.2 Bacteria Alphaproteobacteria 28021 Rhizobium etli CIAT 652 CP001074 NC_010994 Chromosome 0.3833 4358 4513324 1035.6 0.872203 cir 3 3 3 2.4 2.2 0.5 51 51 4335000 2179000 1.0376 5.52364 46 28 2 0 33 3 7.6 3.4 5.5 4 Bacteria Alphaproteobacteria 28021 Rhizobium etli CIAT 652 CP001075 NC_010998 Plasmid pA 0.3778 383 414090 1081.2 0.897368 cir 0 0 0 0.7 0.3 0.7 0 0 383000 94000 1.0551 5.549 3 3 0 0 3 0 7.3 3.5 6 4.4 Bacteria Alphaproteobacteria 28021 Rhizobium etli CIAT 652 CP001076 NC_010996 Plasmid pB 0.4224 379 429111 1132.2 0.736339 cir 0 0 0 9.9 5.4 0.2 0 0 151000 280000 1.0769 5.3344 0 0 0 0 1 1 3.6 2.3 3.3 2.1 Bacteria Alphaproteobacteria 28021 Rhizobium etli CIAT 652 CP001077 NC_010997 Plasmid pC 0.3911 989 1091523 1103.7 0.893168 cir 0 0 0 2.3 0.4 0.4 0 0 231000 994000 1.0152 5.48713 8 5 0 0 6 1 6.1 2.9 4.8 3.3 Bacteria Alphaproteobacteria 20179 Rhizobium leguminosarum bv. trifolii WSM2304 CP001191 NC_011369 Chromosome 0.3847 4325 4537948 1049.2 0.868598 cir 3 3 3 2.4 2.1 0.5 53 53 4091000 1796000 1.0423 5.51919 47 30 2 0 35 3 7.8 3.3 5.6 3.9 Bacteria Alphaproteobacteria 20179 Rhizobium leguminosarum bv. trifolii WSM2304 CP001192 NC_011368 Plasmid pRLG201 0.3964 1161 1266105 1090.5 0.854435 cir 0 0 0 2.1 1.1 0.4 0 0 680000 1089000 0.9891 5.46586 13 9 0 1 14 4 5.4 2.6 4.5 3.1 Bacteria Alphaproteobacteria 20179 Rhizobium leguminosarum bv. trifolii WSM2304 CP001193 NC_011366 Plasmid pRLG202 0.3804 450 501946 1115.4 0.899579 cir 0 0 0 0.6 0.4 0.6 0 0 1000 344000 1.034 5.53923 3 2 0 0 2 0 7.8 3.2 5.7 4.1 Bacteria Alphaproteobacteria 20179 Rhizobium leguminosarum bv. trifolii WSM2304 CP001194 NC_011371 Plasmid pRLG204 0.3861 223 257956 1156.8 0.908322 cir 0 0 0 2 0 0.5 0 0 6000 87000 0.842 5.51981 0 1 0 0 1 0 6.6 3.4 5.1 4 Bacteria Alphaproteobacteria 20179 Rhizobium leguminosarum bv. trifolii WSM2304 CP001195 NC_011370 Plasmid pRLG203 0.421 256 308747 1206 0.826547 cir 0 0 0 1.3 0 0.2 0 0 190000 82000 1.2227 5.34923 0 0 0 0 0 0 3.9 2 3.2 2.5 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236080 NC_008380 Chromosome 0.3891 4737 5057142 1067.6 0.869025 cir 3 3 3 2.1 2.1 0.5 52 52 3860 22.7 7000 2610000 1.0433 5.49991 52 33 3 0 39 3 7.1 3.1 5.2 3.6 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236081 NC_008382 Plasmid pRL7 0.4238 188 151564 806.2 0.835904 cir 0 0 0 19.7 22 0.3 0 0 114 64.9 66000 139000 1.1084 5.33844 1 1 0 0 1 0 4.2 2.1 3.6 2.8 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236082 NC_008383 Plasmid pRL8 0.4126 142 147463 1038.5 0.87839 cir 0 0 0 0 0 0.2 0 0 109 30.3 19000 64000 1.281 5.3738 0 0 0 0 0 0 3.8 2 3.3 2.1 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236083 NC_008379 Plasmid pRL9 0.3901 313 352782 1127.1 0.897248 cir 0 0 0 1 1.4 0.4 0 0 267 17.2 207000 57000 1.0233 5.49847 2 1 0 0 1 0 5.9 2.8 4.5 3.5 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236084 NC_008381 Plasmid pRL10 0.404 471 488135 1036.4 0.869593 cir 0 0 0 1.4 1.7 0.4 0 0 369 27.6 440000 203000 1.0421 5.43533 2 1 0 1 2 0 4.9 2.5 4 2.8 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236085 NC_008384 Plasmid pRL11 0.3903 644 684202 1062.4 0.890032 cir 0 0 0 1.5 0.3 0.5 0 0 510 26.3 462000 83000 1.0099 5.48892 7 5 0 0 7 2 6.3 3 4.7 3.6 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 AM236086 NC_008378 Plasmid 0.3898 790 870021 1101.3 0.912323 cir 0 0 0 1.3 0.6 0.4 0 0 690 14.5 118000 724000 0.9312 5.50316 7 4 0 0 4 0 6.1 2.8 4.5 2.8 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 CP000143 NC_007493 Chromosome 1 0.3099 3022 3188609 1055.1 0.889536 cir 1 1 1 1.9 0.3 0.9 42 41 2561 18 3005000 1429000 1.0003 5.76056 43 21 3 0 25 1 13.6 7.4 8.9 8.7 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 CP000144 NC_007494 Chromosome 2 0.3099 835 943016 1129.4 0.862264 cir 2 2 2 2.6 2.4 0.8 12 12 692 20.7 867000 282000 0.9394 5.76269 7 5 2 0 8 1 13.6 7.4 8.9 8.4 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 DQ232586 NC_009007 Plasmid A 0.3069 87 114045 1310.9 0.769942 lin 0 0 0 7.5 0 0.8 0 0 83 4.8 1.2881 5.75182 0 0 0 0 0 0 18.6 8.3 11.2 12 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 CP000145 NC_007488 Plasmid B 0.2993 100 114178 1141.8 0.889812 cir 0 0 0 0.1 0.3 1 0 0 90 11.1 42000 4000 1.1246 5.8156 1 1 0 0 2 1 15.8 8.8 10.2 10.4 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 CP000146 NC_007489 Plasmid C 0.3624 82 105284 1284 0.682867 cir 0 0 0 0.6 0 0.3 0 0 72 13.9 71000 105000 1.2519 5.52458 1 0 0 0 0 0 6.8 4.3 5.1 4 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 CP000147 NC_007490 Plasmid D 0.3617 87 100828 1158.9 0.72586 cir 0 0 0 3.5 0.4 0.5 0 0 59 47.5 28000 83000 0.8321 5.55355 1 0 1 0 1 0 7.7 3.2 5.7 4.6 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 DQ232587 NC_009008 Plasmid E 0.3319 29 37100 1279.3 0.750485 lin 0 0 0 2.1 0 0.6 0 0 23 26.1 1.0377 5.69447 0 0 0 0 0 0 10.5 5.7 6.1 7.4 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 CP000661 NC_009428 Chromosome 0.3152 3111 3217726 1034.3 0.8968 cir 1 1 1 2.5 4.9 0.9 40 40 2636 18 2820000 1807000 0.8405 5.75346 40 18 3 0 22 1 12.1 6.5 8 7.5 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 CP000662 NC_009429 Plasmid pRSPA01 0.3231 802 877879 1094.6 0.849395 cir 2 2 2 5.6 5.1 0.8 11 11 700 14.6 547000 68000 0.7859 5.72408 5 5 2 0 9 2 10.8 5.9 7.4 6.9 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 CP000663 NC_009430 Plasmid pRSPA02 0.324 268 289489 1080.2 0.82238 cir 1 1 1 1.5 2.2 0.8 3 3 198 35.4 72000 159000 1.181 5.69233 3 0 1 0 1 0 11.6 6.6 7.6 7.6 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 CP000664 NC_009431 Plasmid pRSPA03 0.3064 109 121962 1118.9 0.843451 cir 0 0 0 2.6 4.7 1 0 0 97 12.4 87000 3000 0.8019 5.79005 1 0 0 0 0 0 13.8 8.2 8.5 8.8 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 CP000665 NC_009432 Plasmid pRSPA04 0.3595 31 36198 1167.7 0.795624 cir 0 0 0 1.9 0 0.4 0 0 28 10.7 24000 7000 1.4559 5.54933 0 0 0 0 0 0 7.9 3.2 6 4.7 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 CP000666 NC_009433 Plasmid pRSPA05 0.4107 12 13873 1156.1 0.589274 cir 0 0 0 0.6 0 0.4 0 0 11 9.1 9000 13000 1.6507 5.34971 0 0 0 0 0 0 5.9 2.4 3.6 2.7 Bacteria Alphaproteobacteria 15754 Rhodobacter sphaeroides ATCC 17029 CP000577 NC_009049 Chromosome 1 0.3091 2973 3147721 1058.8 0.892401 cir 1 1 1 2.1 0.4 0.9 39 39 2551 16.5 3111000 1484000 0.9851 5.76417 44 22 3 0 26 1 13.6 7.3 8.8 8.7 Bacteria Alphaproteobacteria 15754 Rhodobacter sphaeroides ATCC 17029 CP000578 NC_009050 Chromosome 2 0.3137 1052 1219053 1158.8 0.866876 cir 3 3 3 4.7 1.1 0.8 16 16 875 20.2 672000 302000 0.9458 5.7491 7 4 2 0 7 1 13.2 7.1 8.6 8.1 Bacteria Alphaproteobacteria 15754 Rhodobacter sphaeroides ATCC 17029 CP000579 NC_009040 Plasmid pRSPH01 0.3039 107 122606 1145.9 0.828671 cir 0 0 0 5.6 0 0.7 0 0 95 12.6 25000 91000 1.1533 5.77769 0 0 0 0 0 0 17.8 8.2 10.1 11.4 Bacteria Alphaproteobacteria 31111 Rhodobacter sphaeroides KD131 CP001150 NC_011963 Chromosome 1 0.3082 3101 3152792 1016.7 0.887638 cir 1 1 1 2.8 1 1 39 39 2679000 1112000 1.0076 5.76646 43 20 3 0 24 1 13.6 7.4 8.8 8.6 Bacteria Alphaproteobacteria 31111 Rhodobacter sphaeroides KD131 CP001152 NC_011962 Plasmid pRSKD131A 0.2991 142 157345 1108.1 0.90735 cir 0 0 0 0 0.3 1 0 0 65000 5000 0.9323 5.81502 1 1 0 0 3 2 15 8.1 9.9 10.4 Bacteria Alphaproteobacteria 31111 Rhodobacter sphaeroides KD131 CP001151 NC_011958 Chromosome 2 0.3129 1224 1297647 1060.2 0.865171 cir 3 3 3 3.3 3.4 0.8 15 15 1183000 763000 0.9179 5.75178 8 5 2 1 9 1 12.8 7 8.5 8 Bacteria Alphaproteobacteria 31111 Rhodobacter sphaeroides KD131 CP001153 NC_011960 Plasmid pRSKD131B 0.3017 102 103355 1013.3 0.858149 cir 0 0 0 5.8 0.6 1 0 0 69000 9000 1.104 5.77256 0 0 0 0 0 0 19.4 9.4 10.8 12 Bacteria Actinobacteria 13693 Rhodococcus jostii RHA1 CP000431 NC_008268 Chromosome 0.3248 7211 7804765 1082.3 0.91035 lin 4 4 4 6.2 5.1 0.7 50 50 5902 22.2 0.488 5.78016 33 11 1 10 22 0 10.7 4.7 7.8 5.6 Bacteria Actinobacteria 13693 Rhodococcus jostii RHA1 CP000432 NC_008269 Plasmid pRHL1 0.3495 1146 1123075 980 0.819658 lin 0 0 0 7.8 6.2 0.5 2 2 758 51.2 0.5927 5.66477 4 2 0 1 3 0 8.1 3.6 5.7 4.8 Bacteria Actinobacteria 13693 Rhodococcus jostii RHA1 CP000433 NC_008270 Plasmid pRHL2 0.3599 454 442536 974.7 0.835934 lin 0 0 0 5.9 2.4 0.4 0 0 307 47.9 0.6379 5.61148 1 0 0 2 2 0 6.2 3.3 5.2 4.4 Bacteria Actinobacteria 13693 Rhodococcus jostii RHA1 CP000434 NC_008271 Plasmid pRHL3 0.3509 334 332361 995.1 0.848048 lin 0 0 0 3 0.8 0.6 0 0 218 53.2 0.6294 5.6571 1 1 0 0 1 0 8.8 3.5 5.8 4.8 Bacteria Betaproteobacteria 13908 Rhodoferax ferrireducens T118 CP000267 NC_007908 Chromosome 0.4012 4170 4712337 1130.1 0.897301 cir 2 2 2 2.6 1.9 0.5 44 44 3727 11.9 280000 2506000 0.5655 5.47054 80 38 1 7 46 0 5.9 2.6 3.9 3 Bacteria Betaproteobacteria 13908 Rhodoferax ferrireducens T118 CP000268 NC_007901 Plasmid1 0.4559 248 257447 1038.1 0.834113 cir 0 0 0 0.4 0 0.2 1 1 156 59 214000 122000 0.9703 5.22629 0 0 0 0 0 0 3.2 1.7 3.4 2.1 Bacteria Planctomycetes 413 Rhodopirellula baltica SH 1 BX119912 NC_005027 Chromosome 0.446 7325 7145576 975.5 0.948178 cir 1 1 1 3.6 2.2 0.3 76 76 4603 59.1 5254000 1935000 0.6892 5.32385 63 35 0 0 35 0 4.4 1.7 3.1 2.2 Bacteria Alphaproteobacteria 15751 Rhodopseudomonas palustris BisA53 CP000463 NC_008435 Chromosome 0.3556 4878 5505494 1128.6 0.857341 cir 2 2 2 4.1 3.3 0.8 48 48 3957 23.3 448000 3183000 0.4514 5.6846 76 41 2 2 47 2 10.8 5.3 7.8 6 Bacteria Alphaproteobacteria 15750 Rhodopseudomonas palustris BisB18 CP000301 NC_007925 Chromosome 0.3504 4886 5513844 1128.5 0.854541 cir 2 2 2 5.5 3.5 0.8 50 50 4020 21.5 914000 2936000 0.387 5.71137 78 43 6 1 52 2 11.4 5.9 8.5 6.6 Bacteria Alphaproteobacteria 15749 Rhodopseudomonas palustris BisB5 CP000283 NC_007958 Chromosome 0.3519 4397 4892717 1112.7 0.867834 cir 2 2 2 2.9 2 0.7 51 51 3666 19.9 542000 3092000 0.4314 5.70207 62 37 3 2 46 4 11.1 5.4 7.8 6.1 Bacteria Alphaproteobacteria 57 Rhodopseudomonas palustris CGA009 BX571964 NC_005297 Plasmid pRPA 0.3955 7 8427 1203.9 0.772754 cir 0 0 0 0.9 0 0.6 0 0 7 0 1000 6000 0.7239 5.43095 0 0 0 0 0 0 12.5 3.1 3.6 5.3 Bacteria Alphaproteobacteria 57 Rhodopseudomonas palustris CGA009 BX571963 NC_005296 Chromosome 0.3496 4833 5459213 1129.6 0.873474 cir 2 2 2 2.4 1.8 0.7 49 49 4098 17.9 519000 3169000 0.4067 5.69979 69 39 4 2 53 8 10.3 5.3 7.4 5.9 Bacteria Alphaproteobacteria 15747 Rhodopseudomonas palustris HaA2 CP000250 NC_007778 Chromosome 0.3396 4683 5331656 1138.5 0.872115 cir 1 1 1 3.1 2.3 0.9 50 50 3953 18.5 411000 3113000 0.4058 5.75884 71 40 5 3 50 2 12.8 6.4 9.3 7.3 Bacteria Alphaproteobacteria 20167 Rhodopseudomonas palustris TIE-1 CP001096 NC_011004 Chromosome 0.3514 5246 5744041 1094.9 0.862894 cir 2 2 2 2.8 1.9 0.7 52 52 323000 3362000 0.4269 5.69065 69 39 3 2 52 8 10.2 5.2 7.2 5.8 Bacteria Alphaproteobacteria 18307 Rhodospirillum centenum SW CP000613 NC_011420 Chromosome 0.2954 4041 4355548 1077.8 0.880165 cir 4 4 4 3 2 1.2 52 52 2882000 1216000 0.9874 5.82532 55 39 4 0 48 5 17 9.7 11.1 10.5 Bacteria Alphaproteobacteria 58 Rhodospirillum rubrum ATCC 11170 CP000231 NC_007641 Plasmid unnamed 0.4023 50 53732 1074.6 0.867193 cir 0 0 0 0 5.4 0.3 0 0 44 13.6 13000 38000 1.662 5.39128 0 0 0 0 0 0 7.7 3.4 5.8 3.4 Bacteria Alphaproteobacteria 58 Rhodospirillum rubrum ATCC 11170 CP000230 NC_007643 Chromosome 0.3455 3791 4352825 1148.2 0.88265 cir 4 4 4 2.6 1.6 0.8 55 55 3376 12.3 4155000 1986000 1.0749 5.64488 57 32 4 0 38 2 11.4 4.5 7.4 5.5 Bacteria Alphaproteobacteria 12953 Rickettsia akari str. Hartford CP000847 NC_009881 Chromosome 0.6767 1259 1231060 977.8 0.75663 lin 1 1 1 3 2.2 0.5 32 33 1.6047 4.32447 4 3 0 0 3 0 9.1 5.9 8 7.7 Bacteria Alphaproteobacteria 17237 Rickettsia bellii OSU 85-389 CP000849 NC_009883 Chromosome 0.6837 1476 1528980 1035.9 0.800271 lin 1 1 1 7.1 6.6 0.6 33 34 1.8914 4.27429 4 4 0 0 4 0 10.6 6.6 8.6 8.7 Bacteria Alphaproteobacteria 13996 Rickettsia bellii RML369-C CP000087 NC_007940 Chromosome 0.6835 1429 1522076 1065.1 0.849232 cir 1 1 1 7.2 6.4 0.5 34 34 1232 16 1504000 762000 1.8899 4.27493 4 4 0 0 4 0 10.6 6.6 8.6 8.8 Bacteria Alphaproteobacteria 12952 Rickettsia canadensis str. McKiel CP000409 NC_009879 Chromosome 0.6895 1093 1159772 1061.1 0.745321 lin 1 1 1 1.5 0.7 0.5 33 33 1.6278 4.26749 4 3 0 0 3 0 9.8 6.8 8.5 8.6 Bacteria Alphaproteobacteria 42 Rickettsia conorii str. Malish 7 AE006914 NC_003103 Chromosome 0.6756 1374 1268755 923.4 0.802934 cir 1 1 1 3.6 3.1 0.5 33 33 996 38 1259000 682000 1.7342 4.31839 4 4 0 0 4 0 9.4 5.9 8.4 7.8 Bacteria Alphaproteobacteria 13884 Rickettsia felis URRWXCal2 CP000053 NC_007109 Chromosome 0.6755 1400 1485148 1060.8 0.835642 cir 1 1 1 9.5 8.6 0.6 33 33 1206 16.1 168000 871000 1.848 4.3113 4 4 0 0 4 0 10 6.3 9.1 8.3 Bacteria Alphaproteobacteria 13884 Rickettsia felis URRWXCal2 CP000054 NC_007110 Plasmid pRF 0.6642 68 62829 924 0.806411 cir 0 0 0 1.7 9.4 0.5 0 0 54 25.9 21000 41000 2.249 4.31978 0 0 0 0 0 0 7.8 3.9 5.7 6.4 Bacteria Alphaproteobacteria 13884 Rickettsia felis URRWXCal2 CP000055 NC_007111 Plasmid pRFdelta 0.6681 44 39263 892.3 0.809057 cir 0 0 0 0 0.6 0.5 0 0 37 18.9 35000 23000 1.9178 4.31582 0 0 0 0 0 0 8 3.7 5.6 6.6 Bacteria Alphaproteobacteria 18271 Rickettsia massiliae MTU5 CP000684 NC_009897 Plasmid pRMA 0.6829 12 15286 1273.8 0.681931 cir 0 0 0 5.6 0 0.5 0 0 3000 8000 2.1785 4.29165 0 0 0 0 0 0 11.7 4 6.5 7.3 Bacteria Alphaproteobacteria 18271 Rickettsia massiliae MTU5 CP000683 NC_009900 Chromosome 0.6746 968 1360898 1405.9 0.695732 cir 1 1 1 5.3 4.3 0.5 33 33 1319000 730000 1.7941 4.31879 4 3 0 0 3 0 9.3 5.9 8.5 7.8 Bacteria Alphaproteobacteria 43 Rickettsia prowazekii str. Madrid E AJ235269 NC_000963 Chromosome 0.71 834 1111523 1332.8 0.754152 cir 1 1 1 0.4 0 0.6 33 33 834 0 1105000 581000 1.4898 4.21553 4 4 0 0 4 0 12 8.4 9.6 10.7 Bacteria Alphaproteobacteria 9636 Rickettsia rickettsii str. Sheila Smith CP000848 NC_009882 Chromosome 0.6753 1345 1257710 935.1 0.760166 lin 1 1 1 3.4 2.8 0.5 33 34 1.7234 4.31995 3 4 0 0 4 0 9.2 6 8.3 7.8 Bacteria Alphaproteobacteria 19943 Rickettsia rickettsii str. Iowa CP000766 NC_010263 Chromosome 0.6755 1384 1268175 916.3 0.764477 cir 1 1 1 3.3 2.8 0.5 34 34 1268000 690000 1.7148 4.31914 4 4 0 0 4 0 9.2 6 8.3 7.9 Bacteria Alphaproteobacteria 10679 Rickettsia typhi str. Wilmington AE017197 NC_006142 Chromosome 0.7108 838 1111496 1326.4 0.753322 cir 1 1 1 0.4 0 0.6 33 33 801 4.6 124000 599000 1.4184 4.21896 4 4 0 0 4 0 11.7 8.6 9.5 10.6 Bacteria Chloroflexi 13462 Roseiflexus castenholzii DSM 13941 CP000804 NC_009767 Chromosome 0.3931 4330 5723298 1321.8 0.821128 cir 2 2 2 7.9 5.2 1.2 48 48 284000 3201000 0.9138 5.55507 78 42 1 10 53 0 9.9 2.8 5.2 4.3 Bacteria Chloroflexi 16190 Roseiflexus sp. RS-1 CP000686 NC_009523 Chromosome 0.3961 4517 5801598 1284.4 0.849994 cir 2 2 2 9 6.4 0.9 48 48 3924 15.1 940000 3200000 0.9425 5.53616 78 41 1 10 52 0 8.7 2.8 5 3.7 Bacteria Alphaproteobacteria 16426 Roseobacter denitrificans OCh 114 CP000362 NC_008209 Chromosome 0.4103 3960 4133097 1043.7 0.900837 cir 1 1 1 1.3 0.9 0.3 38 38 3267 21.2 521000 2534000 0.6442 5.47005 31 17 2 1 20 0 4.6 2 3 2.5 Bacteria Alphaproteobacteria 16426 Roseobacter denitrificans OCh 114 CP000464 NC_008386 Plasmid pTB1 0.4401 106 106469 1004.4 0.840893 cir 0 0 0 0.6 0 0.1 0 0 73 45.2 26000 61000 0.8566 5.29292 0 0 0 0 0 0 4.2 1.7 2.7 2.3 Bacteria Alphaproteobacteria 16426 Roseobacter denitrificans OCh 114 CP000465 NC_008387 Plasmid pTB2 0.4078 56 69269 1236.9 0.871775 cir 0 0 0 0.2 0.7 0.5 0 0 54 3.7 56000 18000 0.8893 5.44089 0 0 0 0 0 0 4.9 2 2.6 2.2 Bacteria Alphaproteobacteria 16426 Roseobacter denitrificans OCh 114 CP000466 NC_008388 Plasmid pTB3 0.4497 16 16575 1035.9 0.810739 cir 0 0 0 0 0 0.3 0 0 13 23.1 5000 12000 1.267 5.17246 0 0 0 0 0 0 4.1 2.2 3.8 1.9 Bacteria Alphaproteobacteria 16426 Roseobacter denitrificans OCh 114 CP000467 NC_008389 Plasmid pTB4 0.444 6 5824 970.7 0.538977 cir 0 0 0 0 0 0 0 0 4 50 5000 2000 1.1504 5.20895 0 0 0 0 0 0 4.8 0 2.3 1.9 Bacteria Actinobacteria 10670 Rubrobacter xylanophilus DSM 9941 CP000386 NC_008148 Chromosome 0.2952 3140 3225748 1027.3 0.917146 cir 1 1 1 3.5 2.4 1.3 46 46 2711 15.8 43000 1455000 2.6961 5.66523 19 10 0 6 16 0 16.7 9.7 10 12.2 Bacteria Gammaproteobacteria 316 Saccharophagus degradans 2-40 CP000282 NC_007912 Chromosome 0.5417 4008 5057531 1261.9 0.866622 cir 2 2 2 2.8 1.6 0.4 41 41 3508 14.3 5019000 2456000 0.8399 4.86687 77 36 0 1 37 0 4.1 1.9 2.9 2.7 Bacteria Actinobacteria 18489 Saccharopolyspora erythraea NRRL 2338 AM420293 NC_009142 Chromosome 0.2885 7198 8212805 1141 0.846522 cir 4 4 4 5.4 4.1 1 50 50 5884 22.3 8212000 3964000 0.4032 5.8912 46 17 1 16 34 0 16.8 9.4 11.7 10.7 Bacteria Bacteroidetes/Chlorobi 16159 Salinibacter ruber DSM 13855 CP000159 NC_007677 Chromosome 0.3378 2801 3551823 1268.1 0.846635 cir 1 1 1 2.3 1.7 0.8 44 44 2419 15.8 38000 1867000 1.8018 5.62131 33 40 1 1 42 0 9.8 5.1 5.8 6.1 Bacteria Bacteroidetes/Chlorobi 16159 Salinibacter ruber DSM 13855 CP000160 NC_007678 Plasmid pSR35 0.4206 32 35505 1109.5 0.839065 cir 0 0 0 1.9 0 0.4 0 0 19 68.4 34000 21000 2.5236 5.20231 0 0 0 0 0 0 10 1.9 4.2 3.6 Bacteria Actinobacteria 17109 Salinispora arenicola CNS-205 CP000850 NC_009953 Chromosome 0.3048 4917 5786361 1176.8 0.859895 cir 3 3 3 5.5 2.9 0.8 52 52 5757000 2853000 0.3927 5.82362 32 16 1 6 23 0 13.1 7.1 9.1 8.5 Bacteria Actinobacteria 16342 Salinispora tropica CNB-440 CP000667 NC_009380 Chromosome 0.3054 4536 5183331 1142.7 0.881052 cir 3 3 3 3.6 2.3 0.8 50 50 3794 19.6 2000 2668000 0.5038 5.80278 30 15 1 9 25 0 12.9 6.9 8.9 8.6 Bacteria Gammaproteobacteria 13030 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- CP000880 NC_010067 Chromosome 0.4862 4510 4600800 1020.1 0.862976 cir 8 7 7 3.5 2.2 0.3 83 85 3710000 1430000 1.2147 5.13812 34 18 0 3 21 0 4 2 3.1 2.6 Bacteria Gammaproteobacteria 20063 Salmonella enterica subsp. enterica serovar Agona str. SL483 CP001137 NC_011148 Plasmid unnamed 0.5926 52 37978 730.3 0.851045 cir 0 0 0 0.7 1.1 0.3 0 0 24000 37000 2.3935 4.62748 0 0 0 0 0 0 5 2 4 2.4 Bacteria Gammaproteobacteria 20063 Salmonella enterica subsp. enterica serovar Agona str. SL483 CP001138 NC_011149 Chromosome 0.4792 4562 4798660 1051.9 0.854746 cir 8 7 7 3.1 2.4 0.3 85 84 4002000 1588000 1.1792 5.17169 38 20 0 3 23 0 4.3 2.1 3.2 2.7 Bacteria Gammaproteobacteria 9618 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 AY509003 NC_006855 Plasmid pSCV50 0.4789 51 49558 971.7 0.758424 cir 0 0 0 0 0.8 0.4 0 0 42 21.4 43000 24000 1.6365 5.09574 0 0 0 0 0 0 5.5 2.2 4.4 3.3 Bacteria Gammaproteobacteria 9618 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 AY509004 NC_006856 Plasmid pSC138 0.4869 170 138742 816.1 0.834448 cir 0 0 0 13.6 10.4 0.2 0 0 133 27.8 134000 57000 1.3997 5.08774 0 1 0 0 1 0 4.7 2.2 3.3 2.3 Bacteria Gammaproteobacteria 9618 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 AE017220 NC_006905 Chromosome 0.4784 4445 4755700 1069.9 0.836313 cir 8 7 7 3.3 3.2 0.3 85 85 4014 10.7 4019000 1647000 1.1778 5.17327 38 21 0 2 23 0 4.1 2 3.2 2.6 Bacteria Gammaproteobacteria 19467 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CP001143 NC_011204 Plasmid pCT02021853_74 0.5137 103 74551 723.8 0.732532 cir 0 0 0 0.2 0.8 0.2 0 0 70000 47000 2.0094 4.96192 0 0 0 0 0 0 5.1 2.3 3.8 3.3 Bacteria Gammaproteobacteria 19467 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CP001144 NC_011205 Chromosome 0.4782 4514 4842908 1072.9 0.828618 cir 8 7 7 2.6 2.1 0.3 83 82 4109000 1701000 1.179 5.17504 37 20 0 3 23 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 30687 Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 AM933172 NC_011294 Chromosome 0.4783 4318 4685848 1085.2 0.870855 cir 8 7 7 2.6 2.1 0.3 84 83 3952000 1619000 1.1805 5.17592 38 21 0 3 24 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 30689 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 AM933173 NC_011274 Chromosome 0.478 4274 4658697 1090 0.870755 cir 8 7 7 2.4 2.3 0.3 75 75 3744000 1663000 1.1867 5.17647 37 20 0 3 23 0 4.2 2.1 3.2 2.7 Bacteria Gammaproteobacteria 20045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 CP001118 NC_011081 Plasmid pSL476_91 0.4968 125 91374 731 0.862434 cir 0 0 0 1.9 0 0.3 0 0 42000 87000 1.7248 5.04785 0 0 0 0 0 0 3.9 2 4 1.9 Bacteria Gammaproteobacteria 20045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 CP001120 NC_011083 Chromosome 0.4791 4650 4888768 1051.3 0.849987 cir 8 7 7 2.8 2.3 0.3 86 85 4094000 1685000 1.1985 5.17017 37 20 0 3 23 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 20045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 CP001119 NC_011082 Plasmid pSL476_3 0.4489 4 3373 843.2 0.683071 cir 0 0 0 0 0 0 0 0 1000 3000 1.6306 5.19893 0 0 0 0 0 0 6.3 0 1.1 4.4 Bacteria Gammaproteobacteria 18747 Salmonella enterica subsp. enterica serovar Newport str. SL254 CP001113 NC_011080 Chromosome 0.4778 4612 4827641 1046.8 0.852985 cir 8 7 7 2.5 2.7 0.3 86 85 4050000 1603000 1.1795 5.17688 38 20 0 3 23 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 18747 Salmonella enterica subsp. enterica serovar Newport str. SL254 CP000604 NC_009140 Plasmid pSN254 0.4718 190 176473 928.8 0.864047 cir 0 0 0 3.5 15.3 0.2 0 0 72000 125000 1.6495 5.09068 0 0 0 0 0 0 4.2 1.9 3.3 2.3 Bacteria Gammaproteobacteria 18747 Salmonella enterica subsp. enterica serovar Newport str. SL254 CP001112 NC_011079 Plasmid pSL254_3 0.5698 3 3605 1201.7 0.571706 cir 0 0 0 0 0 0 0 0 1000 3000 2.4965 4.70147 0 0 0 0 0 0 6.5 4.4 6.1 1.1 Bacteria Gammaproteobacteria 30943 Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 FM200053 NC_011147 Chromosome 0.4782 4284 4581797 1069.5 0.869581 cir 8 7 7 2.3 2.1 0.3 76 81 3855000 1357000 1.1743 5.17567 38 20 0 1 21 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 13086 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 CP000026 NC_006511 Chromosome 0.4784 4093 4585229 1120.3 0.824094 cir 8 7 7 2.4 2.1 0.3 82 82 3870 5.8 3859000 1363000 1.1745 5.17498 38 20 0 1 21 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 27803 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 CP000886 NC_010102 Chromosome 0.4789 5601 4858887 867.5 0.891859 cir 8 7 7 2.7 2.4 0.3 84 85 4029000 1440000 1.1915 5.17123 38 21 0 3 24 0 4.1 2 3.2 2.6 Bacteria Gammaproteobacteria 19459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 CP001125 NC_011092 Plasmid pCVM19633_110 0.4602 122 110227 903.5 0.825442 cir 0 0 0 16.6 9.7 0.1 0 0 89000 55000 1.0424 5.19723 1 1 0 0 1 0 4.9 2.4 3.9 2.5 Bacteria Gammaproteobacteria 19459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 CP001127 NC_011094 Chromosome 0.4783 4500 4709075 1046.5 0.851267 cir 8 7 7 2.3 2.3 0.3 84 83 3959000 1603000 1.1984 5.17431 38 20 0 3 23 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 19459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 CP001126 NC_011093 Plasmid pCVM19633_4 0.5252 5 4585 917 0.799564 cir 0 0 0 0 0 0.6 0 0 4000 2000 1.265 4.91291 0 0 0 0 0 0 4.4 2 4.4 2 Bacteria Gammaproteobacteria 236 Salmonella enterica subsp. enterica serovar Typhi str. CT18 AL513382 NC_003198 Chromosome 0.4791 4600 4809037 1045.4 0.874517 cir 8 7 7 2.7 3.8 0.3 79 78 4058 13.4 3761000 1488000 1.181 5.16937 37 20 0 3 23 0 4.1 2 3.2 2.6 Bacteria Gammaproteobacteria 236 Salmonella enterica subsp. enterica serovar Typhi str. CT18 AL513383 NC_003384 Plasmid pHCM1 0.5242 248 218160 879.7 0.832907 cir 0 0 0 5.2 11.2 0.1 0 0 195 27.2 42000 131000 1.6662 4.92825 0 0 0 0 0 0 4.5 1.9 3.5 2 Bacteria Gammaproteobacteria 236 Salmonella enterica subsp. enterica serovar Typhi str. CT18 AL513384 NC_003385 Plasmid pHCM2 0.4939 132 106516 806.9 0.869606 lin 0 0 0 0 0 0.4 1 1 71 85.9 1.4871 5.04421 0 0 0 0 0 0 4.5 1.4 2.7 2.2 Bacteria Gammaproteobacteria 371 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 AE014613 NC_004631 Chromosome 0.4795 4323 4791961 1108.5 0.822917 cir 8 7 7 3 3 0.3 78 78 4008 7.9 3751000 1517000 1.186 5.1678 37 21 0 3 24 0 4.1 2 3.3 2.6 Bacteria Gammaproteobacteria 241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AE006468 NC_003197 Chromosome 0.4778 4452 4857432 1091.1 0.866567 cir 8 7 7 2.8 3.1 0.3 85 86 4230 5.2 4081000 1604000 1.1876 5.17662 38 21 0 3 24 0 4.2 2.1 3.2 2.6 Bacteria Gammaproteobacteria 241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AE006471 NC_003277 Plasmid pSLT 0.4687 102 93939 921 0.776813 cir 0 0 0 0.3 0.9 0.3 0 0 81 25.9 54000 3000 1.7501 5.14856 0 0 0 0 0 0 5.1 2.2 3.9 2.4 Bacteria Gammaproteobacteria 17459 Serratia proteamaculans 568 CP000827 NC_009829 Plasmid pSPRO01 0.5077 51 46804 917.7 0.736988 cir 0 0 0 1.2 0 1 0 0 15000 46000 1.079 5.03265 0 0 0 0 0 0 4 1.6 3.4 2.5 Bacteria Gammaproteobacteria 17459 Serratia proteamaculans 568 CP000826 NC_009832 Chromosome 0.4493 4891 5448853 1114.1 0.871548 cir 8 7 7 3.2 3.8 0.3 85 85 5440000 2679000 0.8373 5.27697 40 25 0 3 28 0 4.6 2 3.1 2.6 Bacteria Gammaproteobacteria 13385 Shewanella amazonensis SB2B CP000507 NC_008700 Chromosome 0.4641 3645 4306142 1181.4 0.880424 cir 9 8 8 2.3 1.4 0.3 101 101 3274 11.3 4305000 2173000 0.8163 5.15109 61 30 0 2 32 0 4 1.6 2.9 2 Bacteria Gammaproteobacteria 13386 Shewanella baltica OS155 CP000564 NC_009035 Plasmid pSbal01 0.5332 92 116763 1269.2 0.85665 cir 0 0 0 0.7 0 0.4 0 10 81 13.6 74000 110000 0.6492 4.92343 0 0 0 0 0 0 3.5 1.4 3.2 2.1 Bacteria Gammaproteobacteria 13386 Shewanella baltica OS155 CP000563 NC_009052 Chromosome 0.5372 4307 5127376 1190.5 0.833017 cir 11 10 10 6.6 6 0.4 107 107 3738 15.2 5125000 2554000 0.7065 4.8955 52 21 0 3 24 0 3.9 1.7 2.9 2.3 Bacteria Gammaproteobacteria 13386 Shewanella baltica OS155 CP000565 NC_009036 Plasmid pSbal02 0.5758 71 74000 1042.3 0.768068 cir 0 0 0 16.7 11 0.1 0 0 49 44.9 4000 26000 1.4716 4.73254 0 0 0 0 0 0 4.3 2.8 3.4 2.8 Bacteria Gammaproteobacteria 13386 Shewanella baltica OS155 CP000566 NC_009037 Plasmid pSbal03 0.5393 12 16762 1396.8 0.916 cir 0 0 0 0 0 0 0 0 12 0 10000 4000 0.8412 4.87621 0 0 0 0 0 0 4.2 2.4 2.2 2.7 Bacteria Gammaproteobacteria 13386 Shewanella baltica OS155 CP000567 NC_009038 Plasmid pSbal04 0.5974 7 7995 1142.1 0.730457 cir 0 0 0 2.4 0 0 0 0 3 133.3 3000 7000 2.439 4.61048 0 0 0 0 0 0 16 3.3 7.8 5 Bacteria Gammaproteobacteria 17643 Shewanella baltica OS185 CP000754 NC_009661 Plasmid pS18501 0.5626 71 83224 1172.2 0.808685 cir 0 0 0 4.9 6 0.2 0 0 51 39.2 42000 68000 1.3193 4.79989 0 0 0 0 0 0 4.3 2 4 2.8 Bacteria Gammaproteobacteria 17643 Shewanella baltica OS185 CP000753 NC_009665 Chromosome 0.5369 4323 5229686 1209.7 0.836613 cir 11 10 10 4.7 3.9 0.4 106 106 3757 15.1 5228000 2627000 0.6691 4.899 57 24 0 3 27 0 3.9 1.7 3 2.3 Bacteria Gammaproteobacteria 13389 Shewanella baltica OS195 CP000892 NC_009998 Plasmid pS19501 0.5734 67 75605 1128.4 0.852973 cir 0 0 0 1.9 0 0.2 0 0 67000 17000 1.0938 4.76029 0 0 0 0 0 0 4.4 2 3.9 3 Bacteria Gammaproteobacteria 13389 Shewanella baltica OS195 CP000891 NC_009997 Chromosome 0.5372 4499 5347283 1188.5 0.839257 cir 11 10 10 5.2 4.3 0.4 104 104 5338000 2736000 0.6861 4.89713 60 25 0 3 28 0 3.9 1.7 3 2.3 Bacteria Gammaproteobacteria 13389 Shewanella baltica OS195 CP000893 NC_009999 Plasmid pS19502 0.5588 73 75508 1034.4 0.820867 cir 0 0 0 5.5 7.1 0.2 0 0 19000 44000 1.2608 4.81372 0 0 0 0 0 0 4.4 1.9 3.4 2.8 Bacteria Gammaproteobacteria 13389 Shewanella baltica OS195 CP000894 NC_010000 Plasmid pS19503 0.571 49 49148 1003 0.853931 cir 0 0 0 0.2 0 0.3 0 0 20000 4000 1.3286 4.77035 0 0 0 0 0 0 4 1.7 3.7 2.2 Bacteria Gammaproteobacteria 17985 Shewanella baltica OS223 CP001252 NC_011663 Chromosome 0.5369 4250 5145902 1210.8 0.833058 cir 11 10 10 4.6 3.4 0.3 0 109 5139000 2621000 0.6778 4.89926 59 24 0 3 27 0 3.9 1.7 2.9 2.3 Bacteria Gammaproteobacteria 17985 Shewanella baltica OS223 CP001253 NC_011664 Plasmid pS22301 0.5564 79 88311 1117.9 0.760721 cir 0 0 0 5 3.5 0.3 0 0 66000 39000 1.2501 4.8186 0 0 0 0 0 0 4.2 2 4 2.6 Bacteria Gammaproteobacteria 17985 Shewanella baltica OS223 CP001254 NC_011668 Plasmid pS22302 0.5537 61 65448 1072.9 0.856879 cir 0 0 0 0 0.7 0.3 0 0 3000 32000 1.3476 4.83581 0 0 0 0 0 0 4.1 2 4 2.7 Bacteria Gammaproteobacteria 17985 Shewanella baltica OS223 CP001255 NC_011665 Plasmid pS22303 0.5327 51 59223 1161.2 0.822079 cir 0 0 0 3.7 0 0.1 0 0 46000 19000 1.312 4.91822 0 0 0 0 0 0 4.9 1.7 4 2.5 Bacteria Gammaproteobacteria 13390 Shewanella denitrificans OS217 CP000302 NC_007954 Chromosome 0.5485 3754 4545906 1210.9 0.844288 cir 9 8 8 6 4.1 0.4 93 93 3314 13.3 4531000 2171000 0.8152 4.81085 48 18 0 2 20 0 3.8 1.7 3.1 2.2 Bacteria Gammaproteobacteria 13391 Shewanella frigidimarina NCIMB 400 CP000447 NC_008345 Chromosome 0.5842 4029 4845257 1202.6 0.841028 cir 10 9 9 4.2 2.7 0.3 96 96 3550 13.5 4839000 2394000 0.5466 4.74926 53 28 0 2 30 0 4.3 2.2 3.6 2.9 Bacteria Gammaproteobacteria 20241 Shewanella halifaxensis HAW-EB4 CP000931 NC_010334 Chromosome 0.5541 4278 5226917 1221.8 0.832086 cir 11 10 10 3.9 2.4 0.4 125 125 5217000 2650000 0.8595 4.77721 51 21 0 3 24 0 3.9 1.8 3.2 2.3 Bacteria Gammaproteobacteria 13906 Shewanella loihica PV-4 CP000606 NC_009092 Chromosome 0.4633 3859 4602594 1192.7 0.856527 cir 9 8 8 2.7 1.8 0.5 95 95 3388 13.9 4587000 2307000 0.9992 5.09858 58 28 0 2 30 0 5.1 1.7 3 2.2 Bacteria Gammaproteobacteria 335 Shewanella oneidensis MR-1 AE014299 NC_004347 Chromosome 0.5404 4630 4969803 1073.4 0.833128 cir 10 9 9 7 6.1 0.3 102 101 3548 30.5 0 2494000 0.7468 4.87929 61 24 0 2 26 0 3.4 1.8 3.1 2.3 Bacteria Gammaproteobacteria 335 Shewanella oneidensis MR-1 AE014300 NC_004349 Plasmid pMR-1 0.5631 149 161613 1084.7 0.694387 cir 0 0 0 31.1 18.6 0.1 0 0 96 55.2 83000 132000 1.1051 4.78853 0 0 0 0 0 0 3.8 2.4 4 3.1 Bacteria Gammaproteobacteria 17415 Shewanella pealeana ATCC 700345 CP000851 NC_009901 Chromosome 0.5534 4241 5174581 1220.1 0.83404 cir 12 11 11 5.5 3.1 0.3 143 143 5164000 2677000 0.8567 4.77036 56 24 0 2 26 0 3.8 1.8 3.1 2.3 Bacteria Gammaproteobacteria 17675 Shewanella piezotolerans WP3 CP000472 NC_011566 Chromosome 0.5671 4933 5396476 1094 0.843459 cir 9 8 8 5 3.8 0.2 89 89 5395000 2707000 0.8477 4.73716 64 29 0 3 32 0 3.5 1.9 3.4 2.3 Bacteria Gammaproteobacteria 13393 Shewanella putrefaciens CN-32 CP000681 NC_009438 Chromosome 0.5555 3972 4659220 1173 0.854051 cir 9 8 8 3.8 2.7 0.3 101 101 3456 14.9 4654000 2235000 0.8029 4.82297 48 24 0 1 25 0 3.7 1.9 3.1 2.4 Bacteria Gammaproteobacteria 18789 Shewanella sediminis HAW-EB3 CP000821 NC_009831 Chromosome 0.5392 4497 5517674 1227 0.830518 cir 13 12 12 4.2 2.7 0.4 125 125 5507000 2694000 1.3587 4.82196 74 35 0 3 38 0 3.7 1.7 2.9 2.1 Bacteria Gammaproteobacteria 13905 Shewanella sp. ANA-3 CP000470 NC_008573 Plasmid 1 0.5433 249 278942 1120.2 0.827814 cir 0 0 0 4.2 1.4 0.2 0 0 213 16.9 97000 216000 1.0873 4.85443 1 1 0 0 1 0 3.9 1.7 3.1 2.4 Bacteria Gammaproteobacteria 13905 Shewanella sp. ANA-3 CP000469 NC_008577 Chromosome 1 0.5195 4111 4972204 1209.5 0.857369 cir 10 9 9 2.9 2.2 0.3 103 103 3621 13.5 4972000 2541000 0.7322 4.95396 58 26 0 3 29 0 3.5 1.7 3 2.2 Bacteria Gammaproteobacteria 13904 Shewanella sp. MR-4 CP000446 NC_008321 Chromosome 0.5211 3924 4706287 1199.4 0.856972 cir 10 9 9 2.8 2.1 0.3 101 101 3455 13.6 4699000 2395000 0.7522 4.94739 59 24 0 4 28 0 3.5 1.7 2.9 2.1 Bacteria Gammaproteobacteria 13903 Shewanella sp. MR-7 CP000445 NC_008320 Plasmid1 0.5695 8 6499 812.4 0.564548 cir 0 0 0 1.3 0 0.4 0 0 4 100 0 2000 2.1542 4.7111 0 0 0 0 0 0 6.1 2.8 6.8 4.8 Bacteria Gammaproteobacteria 13903 Shewanella sp. MR-7 CP000444 NC_008322 Chromosome 0.5213 4006 4792610 1196.4 0.854864 cir 10 9 9 3.3 2.5 0.3 103 103 3480 15.1 4783000 2344000 0.7537 4.94649 58 23 0 4 27 0 3.5 1.7 2.9 2.1 Bacteria Gammaproteobacteria 13902 Shewanella sp. W3-18-1 CP000503 NC_008750 Chromosome 0.5537 4044 4708380 1164.3 0.852047 cir 9 8 8 3.5 3 0.3 100 100 3489 15.9 4671000 2370000 0.8105 4.82941 48 22 0 1 23 0 3.7 1.8 3.2 2.3 Bacteria Gammaproteobacteria 17455 Shewanella woodyi ATCC 51908 CP000961 NC_010506 Chromosome 0.563 4880 5935403 1216.3 0.850722 cir 11 10 10 5.1 2.7 0.3 126 126 5903000 2957000 1.4208 4.70196 76 35 0 4 39 0 3.7 1.8 3 2.4 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 CP001058 NC_010656 Plasmid pBS512_2 0.5285 3 2089 696.3 0.6764 cir 0 0 0 0 0 2.8 0 0 1000 2000 1.0053 4.89794 0 0 0 0 0 0 3 0 8.3 0 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 CP001063 NC_010658 Chromosome 0.4867 4246 4615997 1087.1 0.764603 cir 8 7 7 14.4 14.8 0.3 102 99 3550000 1577000 1.1531 5.13244 33 17 0 3 20 0 3.6 1.8 3 2.1 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 CP001059 NC_010657 Plasmid pBS512_33 0.5864 52 33103 636.6 0.866659 cir 0 0 0 2.9 0.5 0.4 0 0 11000 1000 2.7822 4.69017 0 0 0 0 0 0 6.2 2.4 4.4 3.5 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 CP001060 NC_010659 Plasmid pBS512_5 0.5364 4 5114 1278.5 0.783144 cir 0 0 0 0 0 0 0 0 2000 4000 2.1314 4.89012 0 0 0 0 0 0 5.3 1.8 4.1 3.1 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 CP001062 NC_010660 Plasmid pBS512_211 0.5393 242 210919 871.6 0.688738 cir 0 0 0 34.6 30.1 0.2 0 0 65000 0 1.9235 4.86674 0 0 0 0 0 0 4.3 2.2 3.1 3 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 CP001061 NC_010672 Plasmid pBS512_7 0.5089 10 7437 743.7 0.41186 lin 0 0 0 0 0 0.7 0 0 2.9985 4.93414 0 0 0 0 0 0 8.7 1.9 5.1 3 Bacteria Gammaproteobacteria 13146 Shigella boydii Sb227 CP000037 NC_007608 Plasmid pSB4_227 0.5259 148 126697 856.1 0.7378 cir 0 0 0 35.2 30.8 0.2 0 0 126 17.5 85000 36000 1.7712 4.92455 0 0 0 0 0 0 3.6 2.2 3.1 2.7 Bacteria Gammaproteobacteria 13146 Shigella boydii Sb227 CP000036 NC_007613 Chromosome 0.4879 4142 4519823 1091.2 0.804416 cir 8 7 7 11.5 11 0.3 91 91 3931 5.4 3567000 1440000 1.1713 5.13019 35 18 0 3 21 0 3.6 1.8 3 2.1 Bacteria Gammaproteobacteria 13145 Shigella dysenteriae Sd197 CP000035 NC_007607 Plasmid pSD1_197 0.552 223 182726 819.4 0.754222 cir 0 0 0 29.5 24.6 0.2 0 0 181 23.2 53000 158000 1.9039 4.81887 0 0 0 0 0 0 4.4 2 3.5 3.3 Bacteria Gammaproteobacteria 13145 Shigella dysenteriae Sd197 CP000034 NC_007606 Chromosome 0.4875 4277 4369232 1021.6 0.770823 cir 8 7 7 14.2 14.2 0.2 85 85 4100 4.3 3735000 1487000 1.0812 5.12913 30 14 0 4 18 0 3.4 1.7 3 2 Bacteria Gammaproteobacteria 13145 Shigella dysenteriae Sd197 CP000640 NC_009344 Plasmid pSD197_spA 0.6035 8 8953 1119.1 0.622026 cir 0 0 0 0 0 0.4 0 0 8 0 7000 2000 3.0381 4.63276 0 0 0 0 0 0 9.2 5 4.9 4.5 Bacteria Gammaproteobacteria 408 Shigella flexneri 2a str. 2457T AE014073 NC_004741 Chromosome 0.4909 4073 4599354 1129.2 0.772073 cir 8 7 7 9.6 9.1 0.3 98 100 3947 3.2 3980000 1601000 1.1598 5.11692 32 17 0 2 19 0 3.6 1.8 3 2.3 Bacteria Gammaproteobacteria 310 Shigella flexneri 2a str. 301 AE005674 NC_004337 Chromosome 0.4911 4436 4607203 1038.6 0.865314 cir 8 7 7 10 10.3 0.3 97 97 4067 9.1 3814000 1563000 1.1538 5.11645 34 18 0 2 20 0 3.6 1.8 3 2.2 Bacteria Gammaproteobacteria 310 Shigella flexneri 2a str. 301 AF386526 NC_004851 Plasmid pCP301 0.5423 267 221618 830 0.786461 cir 0 0 0 29.3 37.3 0.2 0 0 222 20.3 71000 2000 1.9908 4.85135 0 0 0 0 0 0 4 2.1 3.5 3 Bacteria Gammaproteobacteria 16375 Shigella flexneri 5 str. 8401 CP000266 NC_008258 Chromosome 0.4908 4116 4574284 1111.3 0.806278 cir 8 7 7 9.3 9.7 0.3 97 97 3981 3.4 3866000 1567000 1.1561 5.11816 35 18 0 2 20 0 3.6 1.8 3 2.2 Bacteria Gammaproteobacteria 13151 Shigella sonnei Ss046 CP000038 NC_007384 Chromosome 0.4899 4224 4825265 1142.3 0.803304 cir 8 7 7 11.8 11.3 0.3 97 98 4173 1.2 3882000 1740000 1.1605 5.12031 36 20 0 3 23 0 3.8 1.9 3 2.2 Bacteria Gammaproteobacteria 13151 Shigella sonnei Ss046 CP000039 NC_007385 Plasmid pSS_046 0.5473 238 214396 900.8 0.781078 cir 0 0 0 32.6 30.4 0.2 0 0 202 17.8 65000 183000 1.7845 4.83877 0 0 0 0 0 0 4.5 2.3 3.3 3.2 Bacteria Gammaproteobacteria 13151 Shigella sonnei Ss046 CP000641 NC_009345 Plasmid pSS046_spA 0.4459 5 8401 1680.2 0.521605 cir 0 0 0 0.7 0 0 0 0 5 0 3000 6000 2.0831 5.2432 0 0 0 0 0 0 6.4 2 4.9 4.4 Bacteria Gammaproteobacteria 13151 Shigella sonnei Ss046 CP000642 NC_009346 Plasmid pSS046_spB 0.5424 8 5153 644.1 0.732195 cir 0 0 0 0 0 0.5 0 0 3 166.7 0 2000 2.9497 4.77669 0 0 0 0 0 0 5.6 1.3 5.7 2.6 Bacteria Gammaproteobacteria 13151 Shigella sonnei Ss046 CP000643 NC_009347 Plasmid pSS046_spC 0.5288 1 2101 2101 0.459781 cir 0 0 0 0 0 3.3 0 0 1 0 1000 2000 0.9995 4.89871 0 0 0 0 0 0 5.2 0 8.3 0 Bacteria Alphaproteobacteria 281 Silicibacter pomeroyi DSS-3 CP000031 NC_003911 Chromosome 0.3578 3810 4109442 1078.6 0.895108 cir 3 3 3 1.7 1.4 0.7 51 51 3306 15.2 3893000 2089000 0.6212 5.63407 26 18 0 1 19 0 9.2 3.8 5.4 4.4 Bacteria Alphaproteobacteria 281 Silicibacter pomeroyi DSS-3 CP000032 NC_006569 Megaplasmid 0.3721 442 491611 1112.2 0.898098 cir 0 0 0 0.8 0.1 0.6 2 2 390 13.3 349000 167000 0.7121 5.58061 2 1 0 0 1 0 7.9 3.4 4.4 3.6 Bacteria Alphaproteobacteria 13040 Silicibacter sp. TM1040 CP000375 NC_008042 Plasmid unnamed 0.443 106 130973 1235.6 0.788277 cir 1 1 1 0.1 0 0.2 4 4 80 32.5 124000 78000 1.0712 5.23968 0 1 0 0 1 0 3.7 2.2 3.4 2.1 Bacteria Alphaproteobacteria 13040 Silicibacter sp. TM1040 CP000377 NC_008044 Chromosome 0.3959 3030 3200938 1056.4 0.889222 cir 1 1 1 1.3 1.2 0.3 40 40 2552 18.7 3012000 1376000 0.7649 5.45771 30 25 1 1 27 0 5.1 2.2 3.4 2.7 Bacteria Alphaproteobacteria 13040 Silicibacter sp. TM1040 CP000376 NC_008043 Mega plasmid 0.4064 728 821788 1128.8 0.871642 cir 3 3 3 2.6 3.4 0.3 18 18 640 13.8 416000 755000 0.821 5.41502 9 8 0 0 8 0 4.4 2.1 3.1 2.4 Bacteria Alphaproteobacteria 16304 Sinorhizobium medicae WSM419 CP000739 NC_009620 Plasmid pSMED01 0.3854 1441 1570951 1090.2 0.886219 cir 0 0 0 0.9 1.1 0.3 1 1 1220 18.1 569000 1396000 1.1765 5.49727 14 7 0 1 10 2 5.4 3 4.5 3.3 Bacteria Alphaproteobacteria 16304 Sinorhizobium medicae WSM419 CP000738 NC_009636 Chromosome 0.385 3529 3781904 1071.7 0.870653 cir 3 3 3 2.1 1.2 0.4 52 52 2954 19.5 3386000 1376000 1.189 5.50142 24 15 0 0 17 2 5.8 2.9 4.6 3.5 Bacteria Alphaproteobacteria 16304 Sinorhizobium medicae WSM419 CP000740 NC_009621 Plasmid pSMED02 0.4011 1094 1245408 1138.4 0.778386 cir 0 0 0 6.9 2.4 0.3 0 0 882 24 307000 860000 1.059 5.42792 17 7 2 0 12 3 4.2 2.6 3.6 2.9 Bacteria Alphaproteobacteria 16304 Sinorhizobium medicae WSM419 CP000741 NC_009622 Plasmid pSMED03 0.3994 149 219313 1471.9 0.785553 cir 0 0 0 25 3 0.3 0 0 107 39.3 181000 110000 0.9794 5.43136 0 0 0 0 1 1 5.1 2.7 4.1 3.5 Bacteria Alphaproteobacteria 19 Sinorhizobium meliloti 1021 AL591688 NC_003047 Chromosome 0.3727 3341 3654135 1093.7 0.857992 cir 3 3 3 3.7 3.7 0.5 51 52 2865 16.6 0 1738000 1.2831 5.54859 24 15 0 0 17 2 7.1 3.6 5.7 4.1 Bacteria Alphaproteobacteria 19 Sinorhizobium meliloti 1021 AE006469 NC_003037 Plasmid pSymA 0.3963 1294 1354226 1046.5 0.832054 cir 0 0 0 4 4.1 0.3 2 2 1010 28.1 1244000 656000 1.0606 5.4456 12 4 0 0 8 4 4.7 2.7 3.8 3.1 Bacteria Alphaproteobacteria 19 Sinorhizobium meliloti 1021 AL591985 NC_003078 Plasmid pSymB 0.3758 1570 1683333 1072.2 0.886119 cir 0 0 0 1.7 1.9 0.4 1 1 1285 22.2 44000 1132000 1.178 5.53463 17 9 0 2 13 2 6.4 3.4 5.1 3.9 Bacteria Gammaproteobacteria 16309 Sodalis glossinidius str. morsitans AP008232 NC_007712 Chromosome 0.453 2432 4171146 1715.1 0.508364 cir 8 7 7 10.8 10 0.3 69 71 2301 5.7 4128000 2463000 1.1153 5.26517 19 8 0 0 8 0 4.4 2.3 3.2 2.8 Bacteria Gammaproteobacteria 16309 Sodalis glossinidius str. morsitans AP008233 NC_007713 Plasmid pSG1 0.5112 54 83306 1542.7 0.413452 cir 0 0 0 0.3 1.5 0.2 0 0 33 63.6 76000 30000 1.9602 5.01955 0 0 0 0 0 0 4.6 2.4 4.4 3.8 Bacteria Gammaproteobacteria 16309 Sodalis glossinidius str. morsitans AP008234 NC_007714 Plasmid pSG2 0.5534 23 27240 1184.3 0.464023 cir 0 0 0 0.2 3 0.5 0 0 18 27.8 5000 15000 2.2577 4.82892 0 0 0 0 0 0 4.2 2.7 5.2 3.2 Bacteria Gammaproteobacteria 16309 Sodalis glossinidius str. morsitans AP008235 NC_007715 Plasmid pSG3 0.5223 7 10810 1544.3 0.213876 cir 0 0 0 0 0 0 0 0 8000 4000 0.9898 4.96219 0 0 0 0 0 0 4.1 1.8 1.6 2.3 Bacteria Acidobacteria 12638 Solibacter usitatus Ellin6076 CP000473 NC_008536 Chromosome 0.381 7826 9965640 1273.4 0.903415 cir 2 2 2 4.5 3.2 0.4 52 52 6701 16.8 8033000 4804000 0.9667 5.5203 134 63 0 13 76 0 6.6 2.8 3.8 4.1 Bacteria Deltaproteobacteria 28111 Sorangium cellulosum So ce 56 AM746676 NC_010162 Chromosome 0.2862 9384 13033779 1388.9 0.866555 cir 4 4 4 7.6 4.4 1.3 60 60 11375000 4914000 0.8955 5.8773 0 0 20.4 12.4 15.1 15 Bacteria Alphaproteobacteria 17343 Sphingomonas wittichii RW1 CP000700 NC_009507 Plasmid pSWIT01 0.3591 285 310228 1088.5 0.852083 cir 0 0 0 3.1 1.5 0.4 0 0 203 40.4 295000 135000 0.9719 5.60756 7 5 0 0 7 2 6.5 4.2 5.7 4.8 Bacteria Alphaproteobacteria 17343 Sphingomonas wittichii RW1 CP000699 NC_009511 Chromosome 0.316 4850 5382261 1109.7 0.917078 cir 2 2 2 3.3 3 1 48 48 4176 16.1 3429000 548000 0.786 5.81468 51 26 2 0 28 0 15.4 8.3 11.3 9.2 Bacteria Alphaproteobacteria 17343 Sphingomonas wittichii RW1 CP000701 NC_009508 Plasmid pSWIT02 0.3878 210 222757 1060.7 0.835314 cir 0 0 0 7.1 9.6 0.2 0 0 181 16 178000 34000 0.773 5.5128 0 0 0 0 0 0 5 2.7 4.2 3.1 Bacteria Alphaproteobacteria 13907 Sphingopyxis alaskensis RB2256 CP000357 NC_008036 F plasmid 0.3963 30 28543 951.4 0.877693 lin 0 0 0 0 0 0.5 0 0 21 42.9 0.6446 5.48608 0 0 0 0 0 0 5.1 2.9 2.6 3.1 Bacteria Alphaproteobacteria 13907 Sphingopyxis alaskensis RB2256 CP000356 NC_008048 Chromosome 0.345 3165 3345170 1056.9 0.903768 cir 1 1 1 2.3 2.4 0.7 45 45 2665 18.8 2563000 1343000 0.8567 5.74553 23 11 0 0 13 2 11 5.9 8.7 6.7 Bacteria Firmicutes 63 Staphylococcus aureus RF122 AJ938182 NC_007622 Chromosome 0.6722 2589 2742531 1059.3 0.837922 cir 6 5 5 3.5 3.2 0.4 60 60 2113 22.5 0 1372000 1.4097 4.4373 14 7 0 3 10 0 8.9 4.5 6.5 6.7 Bacteria Firmicutes 238 Staphylococcus aureus subsp. aureus COL CP000046 NC_002951 Chromosome 0.6718 2673 2809422 1051 0.82827 cir 7 6 6 4.7 2.9 0.5 53 53 2172 23.1 0 1426000 1.4376 4.43743 16 7 0 4 11 0 9.2 4.5 6.5 6.9 Bacteria Firmicutes 238 Staphylococcus aureus subsp. aureus COL CP000045 NC_006629 Plasmid pT181 0.6995 3 4440 1480 0.803378 lin 0 0 0 0 0 0.6 0 0 3 0 1.3964 4.24262 0 0 0 0 0 0 14.3 0.9 8.1 11 Bacteria Firmicutes 15758 Staphylococcus aureus subsp. aureus JH1 CP000737 NC_009619 Plasmid pSJH101 0.7036 33 30429 922.1 0.775872 cir 0 0 0 9.8 11.1 0.6 0 0 30 10 1000 11000 2.4878 4.25986 0 0 0 0 0 0 14.8 6.3 10.5 10.5 Bacteria Firmicutes 15758 Staphylococcus aureus subsp. aureus JH1 CP000736 NC_009632 Chromosome 0.6705 2747 2906507 1058.1 0.835807 cir 7 6 6 5.7 3.8 0.5 60 60 2261 21.5 0 1537000 1.4691 4.43886 17 8 0 4 12 0 9 4.4 6.2 6.8 Bacteria Firmicutes 15757 Staphylococcus aureus subsp. aureus JH9 CP000704 NC_009477 Plasmid pSJH901 0.7036 29 30429 1049.3 0.772125 cir 0 0 0 9.8 11.1 0.6 0 0 30 -3.3 16000 26000 2.4878 4.25989 0 0 0 0 0 0 14.9 6.4 10.5 10.6 Bacteria Firmicutes 15757 Staphylococcus aureus subsp. aureus JH9 CP000703 NC_009487 Chromosome 0.6705 2697 2906700 1077.8 0.832817 cir 7 6 6 5.7 3.8 0.5 59 59 2261 19.3 0 1537000 1.469 4.43883 17 8 0 4 12 0 9 4.4 6.2 6.8 Bacteria Firmicutes 265 Staphylococcus aureus subsp. aureus MRSA252 BX571856 NC_002952 Chromosome 0.6719 2744 2902619 1057.8 0.843325 cir 6 5 5 5.3 3.4 0.5 60 60 2200 24.7 0 1476000 1.493 4.43536 17 8 0 4 12 0 8.9 4.4 6.4 6.9 Bacteria Firmicutes 266 Staphylococcus aureus subsp. aureus MSSA476 BX571858 NC_005951 Plasmid pSAS 0.7163 24 20652 860.5 0.798664 cir 0 0 0 0.5 0 1 0 0 14 71.4 17000 10000 2.8617 4.20038 0 0 0 0 0 0 13.7 7.1 13.6 12.6 Bacteria Firmicutes 266 Staphylococcus aureus subsp. aureus MSSA476 BX571857 NC_002953 Chromosome 0.6715 2619 2799802 1069 0.839535 cir 7 6 6 4 2.5 0.5 60 59 2166 20.9 0 1414000 1.4416 4.43789 16 7 0 4 11 0 9.1 4.5 6.4 6.9 Bacteria Firmicutes 306 Staphylococcus aureus subsp. aureus MW2 BA000033 NC_003923 Chromosome 0.6717 2632 2820462 1071.6 0.835107 cir 7 6 6 4.3 2.6 0.5 60 60 2204 19.4 1000 1410000 1.444 4.43719 16 7 0 4 11 0 9.2 4.5 6.5 6.9 Bacteria Firmicutes 18509 Staphylococcus aureus subsp. aureus Mu3 AP009324 NC_009782 Chromosome 0.6712 2699 2880168 1067.1 0.836851 cir 6 5 5 4.8 3.4 0.5 61 60 0 1460000 1.4701 4.43764 17 8 0 4 12 0 9.1 4.4 6.3 6.8 Bacteria Firmicutes 263 Staphylococcus aureus subsp. aureus Mu50 BA000017 NC_002758 Chromosome 0.6712 2699 2878529 1066.5 0.836678 cir 6 5 5 4.7 3.4 0.5 60 60 2283 18.2 0 1458000 1.4705 4.43764 17 8 0 4 12 0 9.1 4.4 6.3 6.8 Bacteria Firmicutes 263 Staphylococcus aureus subsp. aureus Mu50 AP003367 NC_002774 Plasmid VRSAp 0.7107 34 25107 738.4 0.793285 cir 0 0 0 11.2 15.2 0.6 0 0 28 21.4 22000 5000 2.9354 4.2324 0 0 0 0 0 0 15.8 5.9 10.9 10.2 Bacteria Firmicutes 264 Staphylococcus aureus subsp. aureus N315 BA000018 NC_002745 Chromosome 0.6716 2593 2814816 1085.5 0.834274 cir 6 5 5 5.2 4.1 0.5 62 62 2237 15.9 0 1408000 1.4552 4.43725 17 8 0 4 12 0 9.1 4.4 6.4 6.8 Bacteria Firmicutes 264 Staphylococcus aureus subsp. aureus N315 AP003139 NC_003140 Plasmid pN315 0.713 31 24653 795.3 0.77451 cir 0 0 0 2.4 0 0.9 0 0 26 19.2 9000 24000 2.9286 4.21331 0 0 0 0 0 0 15.8 7.7 13.5 12.1 Bacteria Firmicutes 237 Staphylococcus aureus subsp. aureus NCTC 8325 CP000253 NC_007795 Chromosome 0.6713 2892 2821361 975.6 0.84727 lin 6 5 5 4.6 2.5 0.5 61 60 2215 30.6 1.458 4.43805 16 7 0 4 11 0 9 4.4 6.4 6.9 Bacteria Firmicutes 16313 Staphylococcus aureus subsp. aureus USA300 CP000255 NC_007793 Chromosome 0.6725 2560 2872769 1122.2 0.819918 cir 6 5 5 4.9 2.8 0.5 53 53 2222 15.2 1000 1400000 1.462 4.43386 16 7 0 4 11 0 9.2 4.5 6.5 7 Bacteria Firmicutes 16313 Staphylococcus aureus subsp. aureus USA300 CP000256 NC_007790 Plasmid pUSA01 0.7126 5 3125 625 0.66912 cir 0 0 0 0 0 1.8 0 0 1 400 0 1000 3.744 4.20864 0 0 0 0 0 0 17.9 4.1 17.9 10.4 Bacteria Firmicutes 16313 Staphylococcus aureus subsp. aureus USA300 CP000257 NC_007791 Plasmid pUSA02 0.6999 3 4439 1479.7 0.803559 cir 0 0 0 0 0 0.6 0 0 3 0 0 2000 1.6445 4.24009 0 0 0 0 0 0 15.5 0.9 8.1 11.4 Bacteria Firmicutes 16313 Staphylococcus aureus subsp. aureus USA300 CP000258 NC_007792 Plasmid pUSA03 0.7133 36 37136 1031.6 0.845083 cir 0 0 0 9.1 0 0.7 0 0 28 28.6 10000 26000 3.9719 4.19321 0 0 0 0 0 0 16.2 6.6 10.5 11.1 Bacteria Firmicutes 19489 Staphylococcus aureus subsp. aureus USA300_TCH1516 CP000730 NC_010079 Chromosome 0.6724 2657 2872915 1081.3 0.801644 cir 6 5 5 4.9 2.8 0.5 60 60 0 1443000 1.4622 4.43403 16 7 0 4 11 0 9.2 4.5 6.5 7 Bacteria Firmicutes 19489 Staphylococcus aureus subsp. aureus USA300_TCH1516 CP000731 NC_010063 Plasmid pUSA300HOUMR 0.6948 26 27041 1040 0.612255 cir 0 0 0 8.2 8.6 0.6 0 0 21000 12000 2.3557 4.29165 0 0 0 0 0 0 13.2 6.5 11.2 11.2 Bacteria Firmicutes 18801 Staphylococcus aureus subsp. aureus str. Newman AP009351 NC_009641 Chromosome 0.6711 2614 2878897 1101.3 0.832591 cir 6 5 5 5.9 6 0.5 56 60 2229 17.3 0 1449000 1.4529 4.43839 16 7 0 4 11 0 9.1 4.4 6.3 6.9 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015929 NC_004461 Chromosome 0.679 2419 2499279 1033.2 0.832949 cir 6 5 5 4.6 2.4 0.5 60 60 1969 22.9 0 1103000 1.7233 4.37299 16 6 0 4 10 0 9.1 5.3 7.4 7.6 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015930 NC_005008 Plasmid pSE-12228-01 0.6995 3 4439 1479.7 0.803559 cir 0 0 0 0 0 0.6 0 0 3 0 0 2000 1.3742 4.2429 0 0 0 0 0 0 14.8 0.9 8.1 11 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015931 NC_005007 Plasmid pSE-12228-02 0.6822 6 4679 779.8 0.689036 cir 0 0 0 0 0 0 0 0 3 100 0 2000 1.667 4.35227 0 0 0 0 0 0 10.5 7.9 13.6 7.2 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015932 NC_005006 Plasmid pSE-12228-03 0.6442 8 8007 1000.9 0.853378 cir 0 0 0 0 0 0.6 0 0 4 100 0 3000 0.6869 4.56715 0 0 0 0 0 0 8.7 3.5 7 6.3 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015933 NC_005005 Plasmid pSE-12228-04 0.7201 16 17261 1078.8 0.753606 cir 0 0 0 0 0 1.1 0 0 14 14.3 13000 2000 3.3312 4.19298 0 0 0 0 0 0 13.6 6.8 12.4 13.6 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015934 NC_005004 Plasmid pSE-12228-05 0.7073 22 24365 1107.5 0.704987 cir 0 0 0 0 0 0.2 0 0 20 10 23000 15000 2.0809 4.25376 0 0 0 0 0 0 14.1 7.3 12.1 9.9 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 AE015935 NC_005003 Plasmid pSE-12228-06 0.685 11 6585 598.6 0.744571 cir 0 0 0 1.4 0 0.4 0 0 5 120 0 2000 2.2779 4.34491 0 0 0 0 0 0 14.2 7.4 10.8 11.8 Bacteria Firmicutes 64 Staphylococcus epidermidis RP62A CP000028 NC_006663 Plasmid pSERP 0.6807 32 27310 853.4 0.775101 cir 0 0 0 11 11.8 0.9 0 0 26 23.1 16000 7000 2.5449 4.34506 0 0 0 0 0 0 12.6 4.6 11 8.1 Bacteria Firmicutes 64 Staphylococcus epidermidis RP62A CP000029 NC_002976 Chromosome 0.6785 2494 2616530 1049.1 0.825243 cir 7 6 6 5.4 4 0.5 61 61 2010 24.1 0 995000 1.7649 4.37062 16 7 0 4 11 0 9.1 5.2 7.2 7.6 Bacteria Firmicutes 12508 Staphylococcus haemolyticus JCSC1435 AP006716 NC_007168 Chromosome 0.6721 2678 2685015 1002.6 0.85889 cir 6 5 5 7.9 6.1 0.5 59 60 2195 22 2586000 1571000 1.6044 4.40333 15 7 0 4 11 0 9.3 4.8 6.9 6.9 Bacteria Firmicutes 12508 Staphylococcus haemolyticus JCSC1435 AP006717 NC_007169 Plasmid pSHaeA 0.7013 3 2300 766.7 0.666522 cir 0 0 0 0 0 2.4 0 0 0 1000 5.1304 4.24041 0 0 0 0 0 0 13.1 5.1 10.5 9.6 Bacteria Firmicutes 12508 Staphylococcus haemolyticus JCSC1435 AP006718 NC_007170 Plasmid pSHaeB 0.6893 2 2366 1183 0.512257 cir 0 0 0 0 0 0 0 0 1000 2000 5.7904 4.26186 0 0 0 0 0 0 10 2.9 13.1 6.2 Bacteria Firmicutes 12508 Staphylococcus haemolyticus JCSC1435 AP006719 NC_007171 Plasmid pSHaeC 0.6974 11 8180 743.6 0.809902 cir 0 0 0 1.3 0 0.7 0 0 4000 1000 4.0465 4.28319 0 0 0 0 0 0 14.4 7.3 12.5 10.2 Bacteria Firmicutes 15596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 AP008934 NC_007350 Chromosome 0.6676 2446 2516575 1028.9 0.83595 cir 7 6 6 2.6 2.1 0.5 60 60 2075 17.9 0 1389000 1.4234 4.447 11 5 0 3 8 0 8.3 4.4 6.7 6.6 Bacteria Firmicutes 15596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 AP008935 NC_007351 Plasmid pSSP1 0.6925 45 38454 854.5 0.814896 cir 0 0 0 8.1 0 0.5 0 0 33 36.4 19000 7000 2.6473 4.30342 0 0 0 0 0 0 9.5 5.1 9.1 8.4 Bacteria Firmicutes 15596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 AP008936 NC_007352 Plasmid pSSP2 0.6866 23 22870 994.3 0.712549 cir 0 0 0 7.7 11.5 0.7 0 0 20 15 17000 9000 2.5448 4.31586 0 0 0 0 0 0 12.6 6.7 11.2 7.5 Archaea Crenarchaeota 17449 Staphylothermus marinus F1 CP000575 NC_009033 Chromosome 0.6427 1570 1570485 1000.3 0.869952 cir 0 1 1 1.2 1 0.6 40 44 1301 20.7 635000 80000 2.6943 4.38348 0 0 0 0 0 0 7.7 3.1 4.2 5.4 Bacteria Gammaproteobacteria 30351 Stenotrophomonas maltophilia K279a AM743169 NC_010943 Chromosome 0.3368 4430 4851126 1095.1 0.894969 cir 4 4 4 3.7 2.6 0.9 0 74 4825000 2465000 0.4623 5.72906 79 44 0 5 50 1 11.7 5.5 7.9 6.1 Bacteria Gammaproteobacteria 17107 Stenotrophomonas maltophilia R551-3 CP001111 NC_011071 Chromosome 0.337 4039 4573969 1132.5 0.893879 cir 5 4 4 2.9 2.3 0.8 73 73 2000 2215000 0.4284 5.73191 80 42 0 4 47 1 11.6 5.2 7.8 6 Bacteria Firmicutes 330 Streptococcus agalactiae 2603V/R AE009948 NC_004116 Chromosome 0.6435 2124 2160267 1017.1 0.863945 cir 7 7 7 4.3 0.9 0.4 80 80 1733 22.6 2143000 989000 2.2494 4.41845 19 10 0 2 12 0 6.5 3.8 5.4 4.9 Bacteria Firmicutes 326 Streptococcus agalactiae A909 CP000114 NC_007432 Chromosome 0.6438 1996 2127839 1066.1 0.860741 cir 7 7 7 4.2 1.2 0.5 80 80 1726 15.6 2111000 1048000 2.2457 4.41764 21 11 0 2 13 0 6.7 3.8 5.5 4.9 Bacteria Firmicutes 334 Streptococcus agalactiae NEM316 AL732656 NC_004368 Chromosome 0.6437 2134 2211485 1036.3 0.884452 lin 7 7 7 7.4 6.7 0.4 80 80 1758 21.4 2.3354 4.41382 20 10 0 2 12 0 6.7 3.9 5.3 4.9 Bacteria Firmicutes 30781 Streptococcus equi subsp. zooepidemicus MGCS10565 CP001129 NC_011134 Chromosome 0.5816 1893 2024171 1069.3 0.827929 cir 5 5 5 5.9 4.6 0.3 57 57 2022000 1046000 2.1476 4.58987 12 5 0 2 7 0 5.3 2 3.6 2.8 Bacteria Firmicutes 66 Streptococcus gordonii str. Challis substr. CH1 CP000725 NC_009785 Chromosome 0.5949 2051 2196662 1071 0.877494 cir 4 4 4 3.4 1.6 0.4 59 59 2194000 1172000 2.9612 4.54059 14 7 0 3 10 0 5.7 2.8 3.9 3.7 Bacteria Firmicutes 333 Streptococcus mutans UA159 AE014133 NC_004350 Chromosome 0.6317 1960 2030921 1036.2 0.856954 cir 5 5 5 3.4 2.4 0.4 65 65 1633 20 2022000 1000000 2.6574 4.45918 13 6 0 3 9 0 6.4 3.4 5.1 4.8 Bacteria Firmicutes 31233 Streptococcus pneumoniae ATCC 700669 FM211187 NC_011900 Chromosome 0.6051 2135 2221315 1040.4 0.869124 cir 4 4 4 6.7 6 0.4 58 58 2220000 1042000 3.0674 4.52282 11 6 0 2 8 0 6.4 2.8 4.3 3.9 Bacteria Firmicutes 29179 Streptococcus pneumoniae CGSP14 CP001033 NC_010582 Chromosome 0.6054 2206 2209198 1001.4 0.862942 cir 4 4 4 7.8 5.7 0.4 58 58 2208000 1112000 3.1085 4.52063 10 6 0 2 8 0 6.4 2.8 4.3 4 Bacteria Firmicutes 16374 Streptococcus pneumoniae D39 CP000410 NC_008533 Chromosome 0.6029 1914 2046115 1069 0.835237 cir 4 4 4 5.6 5.3 0.3 58 58 1579 21.2 2044000 1049000 3.0497 4.52877 12 6 0 2 8 0 5.8 2.7 4.2 3.9 Bacteria Firmicutes 29047 Streptococcus pneumoniae G54 CP001015 NC_011072 Chromosome 0.6032 2115 2078953 983 0.857967 lin 4 4 4 5.8 5.5 0.3 58 58 3.0836 4.52665 11 6 0 2 8 0 5.7 2.7 4.2 3.9 Bacteria Firmicutes 28035 Streptococcus pneumoniae Hungary19A-6 CP000936 NC_010380 Chromosome 0.6037 2155 2245615 1042 0.826748 cir 4 4 4 7 5.5 0.4 55 58 2244000 1187000 3.021 4.52708 12 6 0 2 8 0 6.4 2.7 4.2 3.9 Bacteria Firmicutes 278 Streptococcus pneumoniae R6 AE007317 NC_003098 Chromosome 0.6028 2043 2038615 997.9 0.8646 cir 4 4 4 5.7 5.3 0.3 58 58 1649 23.9 2037000 1041000 3.0497 4.52902 12 6 0 2 8 0 5.8 2.7 4.2 3.9 Bacteria Firmicutes 277 Streptococcus pneumoniae TIGR4 AE005672 NC_003028 Chromosome 0.603 2125 2160842 1016.9 0.835031 cir 4 4 4 8.3 7 0.3 58 58 1642 29.4 2159000 1095000 3.0948 4.52838 12 6 0 2 8 0 6.4 2.8 4.3 3.9 Bacteria Firmicutes 269 Streptococcus pyogenes M1 GAS AE004092 NC_002737 Chromosome 0.6149 1696 1852441 1092.2 0.836131 cir 6 6 6 3 3.8 0.4 60 60 1459 16.2 1833000 969000 2.2809 4.51233 11 6 0 1 7 0 5.5 3 4.4 3.8 Bacteria Firmicutes 16364 Streptococcus pyogenes MGAS10270 CP000260 NC_008022 Chromosome 0.6157 1987 1928252 970.4 0.870567 cir 6 6 6 3.4 4.1 0.4 63 67 1557 27.6 1924000 972000 2.3173 4.50918 12 6 0 1 7 0 5.6 3 4.5 3.9 Bacteria Firmicutes 12469 Streptococcus pyogenes MGAS10394 CP000003 NC_006086 Chromosome 0.6131 1886 1899877 1007.4 0.869442 cir 6 6 6 4.4 4.3 0.4 67 67 1535 22.9 1898000 891000 2.2769 4.51702 11 5 0 1 6 0 5.5 2.9 4.2 3.8 Bacteria Firmicutes 16366 Streptococcus pyogenes MGAS10750 CP000262 NC_008024 Chromosome 0.6168 1979 1937111 978.8 0.870564 cir 6 6 6 4 3.1 0.4 63 67 1577 25.5 1927000 1006000 2.3638 4.50384 12 6 0 1 7 0 5.7 3 4.4 4 Bacteria Firmicutes 16365 Streptococcus pyogenes MGAS2096 CP000261 NC_008023 Chromosome 0.6127 1898 1860355 980.2 0.869208 cir 6 6 6 3.3 3.8 0.4 63 67 1564 21.4 1840000 929000 2.3076 4.52037 13 7 0 1 8 0 5.5 3 4.5 3.8 Bacteria Firmicutes 311 Streptococcus pyogenes MGAS315 AE014074 NC_004070 Chromosome 0.6141 1865 1900521 1019 0.855583 cir 6 6 6 5.2 3.5 0.4 67 67 1513 23.3 1890000 893000 2.2599 4.51609 11 5 0 1 6 0 5.5 2.9 4.3 3.8 Bacteria Firmicutes 13888 Streptococcus pyogenes MGAS5005 CP000017 NC_007297 Chromosome 0.6147 1865 1838554 985.8 0.864503 cir 6 6 6 3.4 3.1 0.4 67 67 1520 22.7 1836000 897000 2.2925 4.51332 12 6 0 1 7 0 5.5 3 4.4 3.8 Bacteria Firmicutes 13887 Streptococcus pyogenes MGAS6180 CP000056 NC_007296 Chromosome 0.6165 1894 1897573 1001.9 0.867213 cir 6 6 6 3.6 2.9 0.4 65 67 1518 24.8 1877000 904000 2.3297 4.50493 12 6 0 1 7 0 5.8 3 4.6 4 Bacteria Firmicutes 286 Streptococcus pyogenes MGAS8232 AE009949 NC_003485 Chromosome 0.6145 1845 1895017 1027.1 0.850153 cir 6 6 6 4.6 5.5 0.4 0 67 1505 22.6 1875000 959000 2.2577 4.51387 11 5 0 1 6 0 5.4 2.9 4.2 3.9 Bacteria Firmicutes 16363 Streptococcus pyogenes MGAS9429 CP000259 NC_008021 Chromosome 0.6146 1877 1836467 978.4 0.873881 cir 6 6 6 3.8 3.5 0.4 67 67 1494 25.6 1816000 968000 2.2788 4.51279 12 6 0 1 7 0 5.5 3 4.4 3.8 Bacteria Firmicutes 20707 Streptococcus pyogenes NZ131 CP000829 NC_011375 Chromosome 0.6143 1703 1815785 1066.2 0.847234 cir 6 6 6 3.3 3.4 0.4 66 66 1796000 934000 2.3013 4.51242 11 5 0 1 6 0 5.5 3 4.5 3.8 Bacteria Firmicutes 301 Streptococcus pyogenes SSI-1 BA000034 NC_004606 Chromosome 0.6145 1861 1894275 1017.9 0.847176 cir 5 5 5 4.5 3.4 0.4 57 57 1484 25.4 1874000 1021000 2.2632 4.5148 11 5 0 1 6 0 5.5 2.9 4.3 3.8 Bacteria Firmicutes 270 Streptococcus pyogenes str. Manfredo AM295007 NC_009332 Chromosome 0.6137 1819 1841271 1012.2 0.867317 cir 6 6 6 3.4 4.5 0.4 66 66 1443 26.1 1831000 892000 2.2599 4.51562 11 5 0 1 6 0 5.4 2.9 4.3 3.8 Bacteria Firmicutes 13942 Streptococcus sanguinis SK36 CP000387 NC_009009 Chromosome 0.566 2270 2388435 1052.2 0.884368 cir 4 4 4 4 1.4 0.3 61 61 1926 17.9 2378000 1188000 2.7982 4.6382 14 7 1 3 11 0 5 2.4 3.5 3 Bacteria Firmicutes 17153 Streptococcus suis 05ZYH33 CP000407 NC_009442 Chromosome 0.5889 2186 2096309 959 0.869531 cir 4 4 4 3.9 2.3 0.3 56 56 1776 23.1 2094000 856000 2.4388 4.61259 9 4 0 2 6 0 4.9 2.4 4 3.2 Bacteria Firmicutes 17155 Streptococcus suis 98HAH33 CP000408 NC_009443 Chromosome 0.5889 2189 2095698 957.4 0.87168 cir 4 4 4 3.9 2.3 0.3 56 56 1766 24 2093000 855000 2.432 4.61283 10 4 0 2 6 0 5 2.4 4 3.2 Bacteria Firmicutes 13163 Streptococcus thermophilus CNRZ1066 CP000024 NC_006449 Chromosome 0.6092 1915 1796226 938 0.836683 cir 6 6 6 5.4 5.2 0.3 0 67 1512 26.7 1794000 909000 2.2313 4.52504 9 5 0 2 7 0 5.2 2.6 4.2 3.9 Bacteria Firmicutes 13773 Streptococcus thermophilus LMD-9 CP000420 NC_008500 Plasmid 1 0.63 4 4449 1112.2 0.543493 cir 0 0 0 0 0 0 0 0 4000 2000 2.3376 4.49359 0 0 0 0 0 0 5 3.6 5.8 1.4 Bacteria Firmicutes 13773 Streptococcus thermophilus LMD-9 CP000419 NC_008532 Chromosome 0.6092 1710 1856368 1085.6 0.76849 cir 6 6 6 6.6 6.1 0.3 67 67 1331 28.5 1848000 935000 2.2284 4.52513 7 2 0 1 3 0 5.2 2.6 4.3 3.9 Bacteria Firmicutes 13773 Streptococcus thermophilus LMD-9 CP000421 NC_008501 Plasmid 2 0.6492 2 3361 1680.5 0.408807 cir 0 0 0 0 0 0.7 0 0 2 0 2000 0 2.9158 4.35741 0 0 0 0 0 0 11.7 4.6 7.9 7.5 Bacteria Firmicutes 13162 Streptococcus thermophilus LMG 18311 CP000023 NC_006448 Chromosome 0.6091 1889 1796846 951.2 0.83724 cir 6 6 6 5.8 5.4 0.3 0 67 1521 24.2 1788000 906000 2.2092 4.52543 9 5 0 2 7 0 5.2 2.6 4.2 3.8 Bacteria Firmicutes 353 Streptococcus uberis 0140J AM946015 NC_012004 Chromosome 0.6337 1825 1852352 1015 0.894405 cir 5 5 5 1.9 2.1 0.4 59 59 1844000 894000 2.661 4.46438 10 6 0 2 8 0 6.3 3.5 5.2 4.6 Bacteria Actinobacteria 189 Streptomyces avermitilis MA-4680 BA000030 NC_003155 Chromosome 0.2928 7577 9025608 1191.2 0.860437 lin 6 6 6 5.2 3.3 1.3 68 68 6317 19.9 0.7042 5.84341 70 29 1 29 59 0 16.8 8 10.2 10.3 Bacteria Actinobacteria 189 Streptomyces avermitilis MA-4680 AP005645 NC_004719 Plasmid SAP1 0.3075 96 94287 982.2 0.835184 lin 0 0 0 1.4 1.1 1 0 0 55 74.5 0.7785 5.75886 0 0 0 0 0 0 14.2 6.5 8.4 8.1 Bacteria Actinobacteria 242 Streptomyces coelicolor A3(2) AL645882 NC_003888 Chromosome 0.2788 7825 8667507 1107.7 0.891558 lin 6 6 6 4.7 3.9 1.5 65 65 6397 22.3 0.7151 5.89497 81 26 1 47 74 0 19 9.8 12 12.1 Bacteria Actinobacteria 242 Streptomyces coelicolor A3(2) AL589148 NC_003903 Plasmid SCP1 0.3094 356 356023 1000.1 0.80947 lin 0 0 0 0.8 43.8 0.7 0 0 203 75.4 0.8769 5.75839 0 0 0 0 0 0 11.7 6.1 8.1 9 Bacteria Actinobacteria 242 Streptomyces coelicolor A3(2) AL645771 NC_003904 Plasmid SCP2 0.2788 34 31317 921.1 0.696618 cir 0 0 0 0 0 0.8 0 0 15 126.7 13000 27000 0.9739 5.86564 0 0 0 0 0 0 20.6 9.4 13.6 11.8 Bacteria Actinobacteria 20085 Streptomyces griseus subsp. griseus NBRC 13350 AP009493 NC_010572 Chromosome 0.2777 7138 8545929 1197.2 0.879559 lin 6 6 6 4 5.7 1.3 66 66 0.8225 5.88388 73 29 1 33 63 0 19.3 9.7 12.3 12.2 Archaea Crenarchaeota 13935 Sulfolobus acidocaldarius DSM 639 CP000077 NC_007181 Chromosome 0.6329 2223 2225959 1001.3 0.849214 cir 0 1 1 0.6 0.9 0.3 49 48 1779 25 1666000 165000 3.7733 4.35428 0 0 0 0 0 0 5.8 3.1 3.4 4.8 Archaea Crenarchaeota 108 Sulfolobus solfataricus P2 AE006641 NC_002754 Chromosome 0.6421 2995 2992245 999.1 0.999651 cir 0 1 1 14.1 14.3 0.4 46 46 2378 25.9 639000 2011000 3.8962 4.33316 0 0 0 0 0 0 7 3.6 4.2 5.7 Archaea Crenarchaeota 246 Sulfolobus tokodaii str. 7 BA000023 NC_003106 Chromosome 0.6721 2826 2694756 953.6 0.83121 cir 0 1 1 4.4 4.7 0.5 46 45 2106 34.2 31000 1910000 4.162 4.22795 0 0 0 0 0 0 9.4 4.8 5.7 7.5 Bacteria Aquificae 18889 Sulfurihydrogenibium sp. YO3AOP1 CP001080 NC_010730 Chromosome 0.6797 1721 1838442 1068.2 0.857251 cir 3 3 3 8.5 7.4 0.6 40 40 649000 1366000 4.3759 4.22177 13 7 0 0 7 0 11.5 5.3 6.4 9.8 Bacteria Epsilonproteobacteria 13019 Sulfurimonas denitrificans DSM 1251 CP000153 NC_007575 Chromosome 0.6554 2097 2201561 1049.9 0.927097 cir 4 4 4 3.3 1.7 0.5 44 44 1818 15.3 2186000 1133000 2.692 4.32059 51 14 1 0 15 0 8.6 4.3 5.5 6.3 Bacteria Epsilonproteobacteria 18965 Sulfurovum sp. NBC37-1 AP009179 NC_009663 Chromosome 0.5613 2466 2562277 1039 0.907564 cir 3 3 3 2.5 1.7 0.4 44 44 2061 19.7 2397000 1187000 3.5011 4.73121 35 20 1 0 21 0 5 2.1 3.3 3.4 Bacteria Firmicutes 12994 Symbiobacterium thermophilum IAM 14863 AP006840 NC_006177 Chromosome 0.3133 3337 3566135 1068.7 0.869845 cir 7 6 6 7.7 5.5 0.9 99 98 2857 16.8 3566000 1875000 1.3461 5.69836 34 13 0 11 24 0 13.5 7.3 8.7 8.4 Bacteria Cyanobacteria 13282 Synechococcus elongatus PCC 6301 AP008231 NC_006576 Chromosome 0.4452 2525 2696255 1067.8 0.875016 cir 2 2 2 0.8 0.9 0.3 45 44 2151 17.4 1595000 206000 0.7888 5.17385 22 13 0 0 13 0 4.2 1.9 2.5 2.2 Bacteria Cyanobacteria 10645 Synechococcus elongatus PCC 7942 CP000100 NC_007604 Chromosome 0.4453 2611 2695903 1032.5 0.888768 cir 2 2 2 0.7 0.9 0.3 44 44 2161 20.8 25000 1783000 0.7859 5.17342 22 13 0 0 13 0 4.2 1.9 2.5 2.2 Bacteria Cyanobacteria 10645 Synechococcus elongatus PCC 7942 CP000101 NC_007595 Plasmid 1 0.4711 50 46366 927.3 0.797308 cir 0 0 0 1.6 0 0.5 0 0 34 47.1 8000 29000 0.936 5.03592 1 1 0 0 1 0 3.1 2.1 2.1 2.9 Bacteria Cyanobacteria 12530 Synechococcus sp. CC9311 CP000435 NC_008319 Chromosome 0.4755 2892 2606748 901.4 0.866939 cir 2 2 2 1.9 1.1 0.3 44 44 1969 46.9 2605000 1300000 1.4606 5.06151 12 9 0 0 9 0 3.7 1.5 2.7 2 Bacteria Cyanobacteria 13643 Synechococcus sp. CC9605 CP000110 NC_007516 Chromosome 0.4078 2638 2510659 951.7 0.86366 cir 2 2 2 2.2 1.9 0.4 45 45 1896 39.1 1000 1240000 1.0951 5.32909 8 4 0 0 4 0 5.6 2.2 3.7 2.7 Bacteria Cyanobacteria 13655 Synechococcus sp. CC9902 CP000097 NC_007513 Chromosome 0.4584 2304 2234828 970 0.892393 cir 2 2 2 0.7 1 0.3 45 45 1806 27.6 1000 1119000 1.1986 5.16426 7 4 0 0 4 0 3.7 1.7 2.9 2.2 Bacteria Cyanobacteria 16252 Synechococcus sp. JA-2-3Ba(2-13) CP000240 NC_007776 Chromosome 0.4155 2862 3046682 1064.5 0.850698 cir 2 2 2 5.3 5.1 0.5 45 45 2321 23.3 1277000 2295000 2.1827 5.20803 33 20 1 0 21 0 5.6 1.9 2.2 2.5 Bacteria Cyanobacteria 16251 Synechococcus sp. JA-3-3Ab CP000239 NC_007775 Chromosome 0.3976 2760 2932766 1062.6 0.843636 cir 2 2 2 6.8 6.6 0.4 47 47 2213 24.7 1149000 264000 2.3283 5.26231 32 18 1 0 19 0 6.4 2.3 3 3 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000957 NC_010474 Plasmid pAQ7 0.5273 165 186459 1130.1 0.857191 cir 0 0 0 1.3 0.3 0.2 0 2 174000 44000 1.2437 4.87556 3 2 0 0 2 0 4.8 2.2 2.2 2.5 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000951 NC_010475 Chromosome 0.5037 2823 3008047 1065.5 0.877983 cir 2 2 2 0.6 0.9 0.3 42 42 15000 1587000 1.6583 4.9674 43 27 0 0 27 0 3.9 1.7 1.6 2.4 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000952 NC_010476 Plasmid pAQ1 0.5097 3 4809 1603 0.680599 cir 0 0 0 0 0 0.5 0 0 1000 3000 1.0605 4.88825 0 0 0 0 0 0 2.8 2 3.7 2 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000953 NC_010477 Plasmid pAQ3 0.5406 17 16103 947.2 0.90095 cir 0 0 0 0.7 0 0.5 0 0 8000 3000 2.0183 4.78617 0 0 0 0 0 0 5.5 2.5 3 2.9 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000954 NC_010478 Plasmid pAQ4 0.559 30 31972 1065.7 0.710184 cir 0 0 0 0 0 0.2 0 0 8000 19000 2.1488 4.72225 0 0 0 0 0 0 9.7 1.1 2.3 2.8 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000955 NC_010479 Plasmid pAQ5 0.5735 39 38515 987.6 0.789978 cir 0 0 0 0 0 0.3 0 0 25000 3000 2.277 4.6639 0 0 0 0 0 0 7.6 2.7 3.9 5.1 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 CP000956 NC_010480 Plasmid pAQ6 0.5493 109 124030 1137.9 0.844312 cir 0 0 0 3.6 0.3 0.2 0 0 35000 73000 2.1196 4.74179 0 0 0 0 0 0 7.4 1.9 2.8 3.2 Bacteria Cyanobacteria 13654 Synechococcus sp. RCC307 CT978603 NC_009482 Chromosome 0.3916 2535 2224914 877.7 0.937749 cir 1 1 1 0.9 0.5 0.5 42 42 1857 36.5 0 1077000 0.7878 5.39637 10 8 0 0 8 0 6.8 2.1 4.3 2.5 Bacteria Cyanobacteria 13642 Synechococcus sp. WH 7803 CT971583 NC_009481 Chromosome 0.3976 2533 2366980 934.5 0.928213 cir 2 2 2 1.1 1.1 0.4 44 44 1942 30.4 2364000 1134000 1.044 5.37791 13 8 0 0 8 0 5.3 2.1 3.7 2.5 Bacteria Cyanobacteria 230 Synechococcus sp. WH 8102 BX548020 NC_005070 Chromosome 0.4059 2526 2434428 963.7 0.899475 cir 2 2 2 3.2 0.8 0.4 44 44 1928 31 0 1233000 1.0027 5.34617 8 4 0 0 4 0 5.9 2.3 3.8 2.8 Bacteria Cyanobacteria 60 Synechocystis sp. PCC 6803 AP004310 NC_005229 Plasmid pSYSM 0.5705 132 119895 908.3 0.82292 cir 0 0 0 12.2 0.2 0.3 0 0 92 43.5 58000 22000 1.9108 4.68525 2 1 0 0 1 0 4.9 2.5 2.5 3.2 Bacteria Cyanobacteria 60 Synechocystis sp. PCC 6803 BA000022 NC_000911 Chromosome 0.5228 3167 3573470 1128.3 0.867941 cir 2 2 2 3 2.8 0.3 43 41 2681 18.1 665000 3117000 2.3165 4.87016 51 38 1 1 40 0 4.1 1.9 1.8 2.5 Bacteria Cyanobacteria 60 Synechocystis sp. PCC 6803 AP004311 NC_005230 Plasmid pSYSA 0.5552 106 103307 974.6 0.749969 cir 0 0 0 2.9 0 0.1 0 0 77 37.7 94000 45000 3.6571 4.70742 0 0 0 0 0 0 11.4 2.4 2.1 4.1 Bacteria Cyanobacteria 60 Synechocystis sp. PCC 6803 AP004312 NC_005231 Plasmid pSYSG 0.5138 49 44343 905 0.784137 cir 0 0 0 0 4.3 0.1 0 0 28 75 16000 41000 2.3363 4.83479 0 0 0 0 0 0 3.6 1.3 1.9 2.2 Bacteria Cyanobacteria 60 Synechocystis sp. PCC 6803 AP006585 NC_005232 Plasmid pSYSX 0.5728 110 106004 963.7 0.868392 cir 0 0 0 55.1 0 0.3 0 1 66 66.7 15000 64000 2.4065 4.68011 2 2 0 0 2 0 6 2.8 2.8 4.1 Bacteria Deltaproteobacteria 13013 Syntrophobacter fumaroxidans MPOB CP000478 NC_008554 Chromosome 0.4005 4064 4990251 1227.9 0.821361 cir 2 2 2 4.6 2.1 0.3 51 51 3402 19.5 3662000 1069000 2.1726 5.38786 82 53 2 6 61 0 5.1 2.4 3.6 2.8 Bacteria Other Bacteria 13014 Syntrophomonas wolfei subsp. wolfei str. Goettingen CP000448 NC_008346 Chromosome 0.5513 2504 2936195 1172.6 0.826999 cir 13 3 3 6.8 4.8 0.4 46 46 2187 14.5 1000 1365000 3.1652 4.72705 28 10 0 1 11 0 4.7 1.9 3.2 2.7 Bacteria Deltaproteobacteria 16258 Syntrophus aciditrophicus SB CP000252 NC_007759 Chromosome 0.4854 3168 3179300 1003.6 0.884161 cir 1 1 1 2.8 3.1 0.3 48 49 2402 31.9 3149000 1798000 3.5799 5.03475 42 18 0 2 20 0 4.2 1.8 2.8 2.2 Bacteria Betaproteobacteria 20091 Thauera sp. MZ1T CP001282 NC_011667 Plasmid pTha01 0.3773 75 78374 1045 0.774428 cir 0 0 0 3.2 12.5 0.5 0 0 42000 9000 0.9837 5.5137 1 1 0 0 1 0 9.2 4.4 5.6 5.1 Bacteria Firmicutes 13901 Thermoanaerobacter pseudethanolicus ATCC 33223 CP000924 NC_010321 Chromosome 0.6549 2243 2362816 1053.4 0.867434 cir 2 4 4 8.2 7.4 0.6 56 56 0 1229000 4.6941 4.31983 11 6 0 0 6 0 9.3 4 5.8 7.3 Bacteria Firmicutes 16394 Thermoanaerobacter sp. X514 CP000923 NC_010320 Chromosome 0.6548 2349 2457259 1046.1 0.866769 cir 0 4 4 5.3 5.3 0.6 54 54 2457000 1635000 4.6028 4.32389 16 7 0 1 8 0 9.2 4 5.7 7.2 Bacteria Firmicutes 249 Thermoanaerobacter tengcongensis MB4 AE008691 NC_003869 Chromosome 0.6243 2588 2689445 1039.2 0.868848 cir 4 4 4 9.4 9 0.5 55 55 2207 17.3 0 1346000 5.8331 4.38358 21 8 0 1 9 0 8 3 4.4 5.9 Bacteria Actinobacteria 94 Thermobifida fusca YX CP000088 NC_007333 Chromosome 0.325 3110 3642249 1171.1 0.850346 cir 4 4 4 1.6 0.5 0.7 52 52 2641 17.8 1829000 3507000 1.2099 5.68692 26 10 1 8 19 0 10.9 5 7.1 6.3 Archaea Euryarchaeota 13213 Thermococcus kodakarensis KOD1 AP006878 NC_006624 Chromosome 0.48 2306 2088737 905.8 0.915879 cir 0 1 1 1.4 2.1 0.4 46 46 1882 22.5 1722000 934000 4.2811 4.87538 2 0 0 0 0 0 4.9 2.1 2.4 2.9 Archaea Euryarchaeota 20773 Thermococcus onnurineus NA1 CP000855 NC_011529 Chromosome 0.4873 1976 1847607 935 0.90144 lin 0 1 1 0.8 0.7 0.4 46 46 3.7459 4.86862 2 0 0 0 0 0 4.7 2.1 2.2 2.9 Bacteria Other Bacteria 30733 Thermodesulfovibrio yellowstonii DSM 11347 CP001147 NC_011296 Chromosome 0.6587 2033 2003803 985.6 0.935228 cir 1 1 1 6.2 1 0.5 47 48 4000 1087000 4.5316 4.28696 39 20 0 1 21 0 9.3 4.5 5.6 6.7 Archaea Crenarchaeota 16331 Thermofilum pendens Hrk 5 CP000505 NC_008698 Chromosome 0.4233 1824 1781889 976.9 0.901734 cir 0 1 1 2.5 2.4 0.5 32 39 1506 21.1 491000 1533000 3.5211 5.07196 0 0 0 0 0 0 6.4 2.4 3 4 Archaea Crenarchaeota 16331 Thermofilum pendens Hrk 5 CP000506 NC_008696 Plasmid pTPEN01 0.4346 52 31504 605.8 0.839576 cir 0 0 0 0 0.3 1.1 0 0 12 333.3 8000 19000 5.358 5.01394 0 0 0 0 0 0 11 2.1 5.1 4.3 Bacteria Chloroflexi 32569 Thermomicrobium roseum DSM 5159 CP001275 NC_011959 Chromosome 0.3635 1922 2003006 1042.1 0.899641 cir 1 1 1 0.5 0.5 0.4 44 46 1779000 824000 1.2145 5.55445 11 2 1 3 6 0 6.4 3.5 5 4.3 Bacteria Chloroflexi 32569 Thermomicrobium roseum DSM 5159 CP001276 NC_011961 Plasmid unnamed 0.3432 937 917738 979.4 0.872821 cir 1 1 1 1.3 0.6 0.5 0 3 877000 533000 1.3395 5.61411 5 1 0 1 2 0 8.1 4.1 5.5 5.8 Archaea Euryarchaeota 110 Thermoplasma acidophilum DSM 1728 AL139299 NC_002578 Chromosome 0.5401 1478 1564906 1058.8 0.865598 cir 0 1 1 0.6 0.5 0.3 45 45 1299 13.8 1500000 974000 2.4909 4.83437 0 0 0 0 0 0 3.8 1.7 2.4 2.3 Archaea Euryarchaeota 206 Thermoplasma volcanium GSS1 BA000011 NC_002689 Chromosome 0.6008 1526 1584804 1038.5 0.856808 cir 0 1 1 2.1 1.5 0.2 46 45 1286 18.7 185000 952000 3.0305 4.56184 0 0 0 0 0 0 4.1 2.5 3.2 3.6 Archaea Crenarchaeota 15645 Thermoproteus neutrophilus V24Sta CP001014 NC_010525 Chromosome 0.4009 1966 1769823 900.2 0.893881 cir 0 1 1 1.4 1 0.6 38 44 1381000 425000 3.3771 5.21176 0 0 0 0 0 0 8.4 3.1 3.9 5 Bacteria Thermotogae 27767 Thermosipho africanus TCF52B CP001185 NC_011653 Chromosome 0.6919 1913 2016657 1054.2 0.88426 cir 3 3 3 5 4.4 0.7 48 48 645000 1990000 4.1753 4.23235 12 5 0 0 5 0 13.4 6.2 8.5 10.4 Bacteria Thermotogae 17249 Thermosipho melanesiensis BI429 CP000716 NC_009616 Chromosome 0.686 1879 1915238 1019.3 0.911646 cir 4 4 4 2.5 0.7 0.7 50 50 1643 14.4 821000 1683000 4.5168 4.26863 13 6 0 0 6 0 12.1 5.7 7.3 10.3 Bacteria Cyanobacteria 308 Thermosynechococcus elongatus BP-1 BA000039 NC_004113 Chromosome 0.4608 2475 2593857 1048 0.894884 cir 1 1 1 5.7 4.6 0.3 42 40 2092 18.3 441000 1534000 1.5509 5.10391 28 14 0 0 14 0 3.8 1.6 1.4 2 Bacteria Thermotogae 15644 Thermotoga lettingae TMO CP000812 NC_009828 Chromosome 0.613 2040 2135342 1046.7 0.938334 cir 1 1 1 0.6 0.2 0.3 46 46 143000 1516000 3.0962 4.53249 10 6 0 0 6 0 4.9 2.3 3.3 3.5 Bacteria Thermotogae 111 Thermotoga maritima MSB8 AE000512 NC_000853 Chromosome 0.5375 1846 1860725 1008 0.934503 cir 1 1 1 1.9 1.1 0.3 46 46 1661 11.1 164000 892000 6.1274 4.70982 11 5 0 0 5 0 4.9 2 2.9 3.4 Bacteria Thermotogae 21023 Thermotoga neapolitana DSM 4359 CP000916 NC_011978 Chromosome 0.5306 1937 1884562 972.9 0.95539 cir 1 1 1 1.3 0.9 0.4 48 48 527000 1398000 6.3421 4.73423 10 5 0 0 5 0 5.1 2 2.9 3.3 Bacteria Thermotogae 17089 Thermotoga petrophila RKU-1 CP000702 NC_009486 Chromosome 0.539 1785 1823511 1021.6 0.942475 cir 1 1 1 1.8 1.2 0.3 46 46 1630 9.5 771000 48000 6.1213 4.70555 11 5 0 0 5 0 5 1.9 2.9 3.3 Bacteria Thermotogae 19543 Thermotoga sp. RQ2 CP000969 NC_010483 Chromosome 0.5382 1819 1877693 1032.3 0.940848 cir 1 1 1 1.9 1.5 0.3 46 46 819000 1383000 6.1121 4.70826 11 5 0 0 5 0 5.1 1.9 2.9 3.4 Bacteria Deinococcus-Thermus 10617 Thermus thermophilus HB27 AE017221 NC_005835 Chromosome 0.3056 1982 1894877 956 0.949414 cir 2 2 2 1.7 1.6 1.7 47 47 1709 16 1543000 606000 6.8361 5.44483 13 9 0 2 11 0 20.5 11.7 12.7 12.3 Bacteria Deinococcus-Thermus 10617 Thermus thermophilus HB27 AE017222 NC_005838 Plasmid pTT27 0.3084 228 232605 1020.2 0.87916 cir 0 0 0 2.8 4.7 1.2 0 0 168 35.7 62000 181000 7.2518 5.41424 0 0 0 0 0 0 19.9 11.9 11.8 11.9 Bacteria Deinococcus-Thermus 13202 Thermus thermophilus HB8 AP008226 NC_006461 Chromosome 0.3048 1973 1849742 937.5 0.951391 cir 2 2 2 1.5 1.7 1.6 47 48 1670 18.1 372000 932000 6.8384 5.4474 12 9 0 1 10 0 20.7 11.8 12.6 12.5 Bacteria Deinococcus-Thermus 13202 Thermus thermophilus HB8 AP008228 NC_006463 Plasmid pTT8 0.3099 14 9322 665.9 0.677108 cir 0 0 0 0 0 0.5 0 0 6000 0 6.7582 5.46569 0 0 0 0 0 0 18.1 16.4 12.8 11.9 Bacteria Deinococcus-Thermus 13202 Thermus thermophilus HB8 AP008227 NC_006462 Plasmid pTT27 0.3064 251 256992 1023.9 0.8873 cir 0 0 0 5.2 1 1.2 0 0 202 24.3 21000 200000 6.957 5.43364 1 0 0 0 0 0 20.2 11.9 11.8 11.5 Bacteria Gammaproteobacteria 29177 Thioalkalivibrio sp. HL-EbGR7 CP001339 NC_011901 Chromosome 0.3494 3283 3464554 1055.3 0.872556 cir 1 1 1 2.6 2.3 1.3 44 44 4000 1734000 0.7402 5.59359 39 18 0 1 19 0 11.6 4.6 7.3 5.1 Bacteria Betaproteobacteria 13025 Thiobacillus denitrificans ATCC 25259 CP000116 NC_007404 Chromosome 0.3393 2827 2909809 1029.3 0.92338 cir 2 2 2 1.1 0.9 0.9 43 43 2414 17.1 2908000 1407000 0.587 5.72879 44 19 0 5 24 0 11.6 6.4 8.3 7.5 Bacteria Gammaproteobacteria 13018 Thiomicrospira crunogena XCL-2 CP000109 NC_007520 Chromosome 0.5687 2196 2427734 1105.5 0.898336 cir 3 3 3 2 0.7 0.3 43 43 1971 11.4 54000 1320000 1.4396 4.79048 27 14 0 0 14 0 4.1 2 3.2 2.9 Bacteria Spirochaetes 4 Treponema denticola ATCC 35405 AE017226 NC_002967 Chromosome 0.6213 2767 2843201 1027.5 0.914869 cir 2 2 2 5.1 2.5 0.4 44 44 2196 26 325000 1641000 3.8404 4.48902 11 3 0 2 5 0 7.9 4.6 6 6.2 Bacteria Spirochaetes 20067 Treponema pallidum subsp. pallidum SS14 CP000805 NC_010741 Chromosome 0.472 1028 1139457 1108.4 0.918635 cir 2 2 2 2.4 0.6 0.3 45 45 3000 555000 3.0626 5.13355 3 0 0 0 0 0 3.6 1.6 2.2 2.9 Bacteria Spirochaetes 5 Treponema pallidum subsp. pallidum str. Nichols AE000520 NC_000919 Chromosome 0.4722 1031 1138011 1103.8 0.920667 cir 2 2 2 2.3 0.6 0.2 45 45 1035 -0.4 3000 553000 3.059 5.13342 3 0 0 0 0 0 3.5 1.5 2.2 2.9 Bacteria Cyanobacteria 318 Trichodesmium erythraeum IMS101 CP000393 NC_008312 Chromosome 0.6586 4451 7750108 1741.2 0.599149 cir 1 2 2 18.4 12.4 0.8 38 38 3476 28 5343000 1585000 2.4697 4.31353 42 24 0 0 24 0 9.8 4.9 6.4 7 Bacteria Actinobacteria 354 Tropheryma whipplei TW08/27 BX072543 NC_004551 Chromosome 0.5369 784 925938 1181 0.846726 cir 1 1 1 7.7 3.8 0.5 51 51 700 12 478000 4000 1.4295 4.85308 2 1 1 0 2 0 5.6 1.4 2.6 2.3 Bacteria Actinobacteria 95 Tropheryma whipplei str. Twist AE014184 NC_004572 Chromosome 0.5367 808 927303 1147.7 0.854296 cir 1 1 1 7.5 4.5 0.6 49 50 701 15.3 410000 8000 1.4281 4.85372 2 1 1 0 2 0 5.7 1.4 2.6 2.3 Bacteria Firmicutes 19087 Ureaplasma parvum serovar 3 str. ATCC 27815 CP000942 NC_010503 Chromosome 0.745 609 751679 1234.3 0.914256 cir 2 2 2 3.5 0.4 1.2 27 30 40000 477000 1.386 4.17663 0 0 0 0 0 0 21.5 14.8 17.2 18.6 Bacteria Firmicutes 101 Ureaplasma parvum serovar 3 str. ATCC 700970 AF222894 NC_002162 Chromosome 0.745 611 751719 1230.3 0.90912 cir 2 2 2 3.5 0.3 1.2 30 30 588 3.9 41000 477000 1.3846 4.17671 0 0 0 0 0 0 21.5 14.8 17.2 18.6 Bacteria Other Bacteria 20247 Ureaplasma urealyticum serovar 10 str. ATCC 33699 CP001184 NC_011374 Chromosome 0.7423 646 874478 1353.7 0.895897 cir 2 2 2 7.4 0.7 1 27 30 45000 508000 1.1885 4.18673 0 0 0 0 0 0 21.8 13.7 17 17.6 Bacteria Betaproteobacteria 17187 Verminephrobacter eiseniae EF01-2 CP000543 NC_008771 Plasmid pVEIS01 0.4139 39 31194 799.8 0.848913 cir 0 0 0 0 0.3 0.7 0 0 19 105.3 19000 1000 0.8816 5.36402 0 0 0 0 0 0 7.3 2.5 5.8 3.2 Bacteria Betaproteobacteria 17187 Verminephrobacter eiseniae EF01-2 CP000542 NC_008786 Chromosome 0.3472 4908 5566749 1134.2 0.888853 cir 3 3 3 9.3 6.5 0.9 47 47 4265 15.1 2750000 801000 0.4247 5.70767 24 12 0 2 14 0 11 4.8 7.5 5.3 Bacteria Gammaproteobacteria 36 Vibrio cholerae O1 biovar El Tor str. N16961 AE003852 NC_002505 Chromosome I 0.523 2736 2961149 1082.3 0.870069 cir 9 8 8 3 2.1 0.3 94 94 2355 16.2 7000 1564000 1.1394 4.95771 38 17 0 1 18 0 3.4 1.8 2.8 2.1 Bacteria Gammaproteobacteria 36 Vibrio cholerae O1 biovar El Tor str. N16961 AE003853 NC_002506 Chromosome II 0.5309 1092 1072315 982 0.844498 cir 0 0 0 7.6 1.3 0.2 4 4 775 40.9 100000 514000 1.1313 4.93067 15 6 0 2 8 0 3.6 1.8 3.7 2 Bacteria Gammaproteobacteria 15667 Vibrio cholerae O395 CP000626 NC_009456 Chromosome 1 0.5312 1133 1108250 978.2 0.864398 cir 0 0 0 5.7 1.4 0.3 4 4 813 39.4 57000 578000 1.1607 4.92918 17 7 0 2 9 0 3.7 1.8 3.6 2.1 Bacteria Gammaproteobacteria 15667 Vibrio cholerae O395 CP000627 NC_009457 Chromosome 2 0.5222 2742 3024069 1102.9 0.881341 cir 9 8 8 3.1 4.3 0.3 92 92 2434 12.7 2662000 1114000 1.1414 4.96068 39 17 0 1 18 0 3.4 1.7 2.8 2.1 Bacteria Gammaproteobacteria 12986 Vibrio fischeri ES114 CP000020 NC_006840 Chromosome I 0.6104 2575 2906179 1128.6 0.861663 cir 12 11 11 3.6 2.6 0.4 107 108 2382 8.1 6000 1448000 1.5573 4.60064 26 13 0 1 14 0 4.9 2.7 4.5 3.4 Bacteria Gammaproteobacteria 12986 Vibrio fischeri ES114 CP000021 NC_006841 Chromosome II 0.6298 1172 1332022 1136.5 0.87158 cir 1 1 1 2.8 0.3 0.3 11 11 974 20.3 0 659000 1.5711 4.5433 21 9 0 1 10 0 5.4 3.2 4.9 4.3 Bacteria Gammaproteobacteria 12986 Vibrio fischeri ES114 CP000022 NC_006842 Plasmid pES100 0.6158 55 45849 833.6 0.867653 cir 0 0 0 2.6 0 0.3 0 0 32 71.9 45000 14000 2.1745 4.61543 0 0 0 0 0 0 5.6 2.5 6.4 3.7 Bacteria Gammaproteobacteria 19393 Vibrio fischeri MJ11 CP001133 NC_011186 Chromosome II 0.6275 1254 1418848 1131.5 0.874961 cir 1 1 1 5 0.2 0.3 11 11 2000 682000 1.5806 4.55558 20 8 0 1 9 0 5.2 3.2 4.6 4.1 Bacteria Gammaproteobacteria 19393 Vibrio fischeri MJ11 CP001134 NC_011185 Plasmid pMJ100 0.652 195 179459 920.3 0.895558 cir 0 0 0 2.9 0 0.4 0 0 22000 76000 1.9921 4.44726 0 0 0 0 0 0 6.3 3.7 5.3 4.9 Bacteria Gammaproteobacteria 19393 Vibrio fischeri MJ11 CP001139 NC_011184 Chromosome I 0.6112 2590 2905029 1121.6 0.86882 cir 7 9 9 3.1 2 0.3 113 113 2000 1473000 1.5522 4.598 27 13 0 1 14 0 5.1 2.7 4.5 3.5 Bacteria Gammaproteobacteria 19857 Vibrio harveyi ATCC BAA-1116 CP000791 NC_009777 Plasmid pVIBHAR 0.5621 120 89008 741.7 0.796647 cir 0 0 0 12.8 5.1 0.1 0 0 19000 54000 1.5853 4.74199 0 0 0 0 0 0 4.2 2.4 3.9 2.5 Bacteria Gammaproteobacteria 19857 Vibrio harveyi ATCC BAA-1116 CP000789 NC_009783 Chromosome I 0.5445 3570 3765351 1054.7 0.853587 cir 10 10 9 12.7 12.2 0.3 105 105 416000 2294000 1.2964 4.83411 33 17 0 1 18 0 3.6 1.9 3.1 2.4 Bacteria Gammaproteobacteria 19857 Vibrio harveyi ATCC BAA-1116 CP000790 NC_009784 Chromosome II 0.5473 2374 2204018 928.4 0.862563 cir 1 1 1 15.1 13.8 0.2 16 16 2119000 957000 1.3249 4.83392 26 14 0 1 15 0 3.4 1.8 3.2 2.3 Bacteria Gammaproteobacteria 360 Vibrio parahaemolyticus RIMD 2210633 BA000031 NC_004603 Chromosome I 0.5461 3080 3288558 1067.7 0.866327 cir 11 10 10 3.3 1.8 0.3 112 112 2587 19.1 3287000 1667000 1.218 4.85379 36 21 0 1 22 0 3.4 1.9 3.1 2.4 Bacteria Gammaproteobacteria 360 Vibrio parahaemolyticus RIMD 2210633 BA000032 NC_004605 Chromosome II 0.5465 1752 1877212 1071.5 0.868531 cir 1 1 1 1.4 0.7 0.2 14 14 1362 28.6 0 935000 1.2028 4.87312 30 15 0 2 17 0 3.4 2.1 3.2 2.4 Bacteria Gammaproteobacteria 32815 Vibrio splendidus LGP32 FM954973 NC_011744 Chromosome 2 0.5636 1486 1675519 1127.5 0.854438 cir 1 1 1 2.6 0.4 0.3 17 17 1673000 815000 1.1094 4.76706 25 16 0 1 17 0 3.8 2 3.1 2.5 Bacteria Gammaproteobacteria 32815 Vibrio splendidus LGP32 FM954972 NC_011753 Chromosome 1 0.5596 2950 3299302 1118.4 0.860439 cir 8 7 7 2.7 1.9 0.3 97 97 8000 1612000 1.1631 4.76787 41 19 0 1 20 0 3.9 2 3.1 2.5 Bacteria Gammaproteobacteria 349 Vibrio vulnificus CMCP6 AE016795 NC_004459 Chromosome I 0.5355 2973 3281944 1103.9 0.84407 cir 9 8 8 5 1.9 0.3 98 98 2592 14.7 1006000 2640000 1.3758 4.90326 40 19 0 1 20 0 3.5 1.8 3 2.5 Bacteria Gammaproteobacteria 349 Vibrio vulnificus CMCP6 AE016796 NC_004460 Chromosome II 0.5288 1565 1844853 1178.8 0.861217 cir 1 1 1 0.9 0.2 0.2 13 13 1323 18.3 1276000 314000 1.4095 4.94509 35 16 0 2 18 0 3.5 1.8 2.8 2.3 Bacteria Gammaproteobacteria 1430 Vibrio vulnificus YJ016 BA000037 NC_005139 Chromosome I 0.5359 3262 3354505 1028.4 0.878122 cir 9 8 8 5.1 2.5 0.3 100 100 2659 22.7 3353000 1743000 1.3725 4.90151 40 21 0 1 22 0 3.5 1.9 3 2.3 Bacteria Gammaproteobacteria 1430 Vibrio vulnificus YJ016 BA000038 NC_005140 Chromosome II 0.5279 1697 1857073 1094.3 0.893309 cir 1 1 1 1 0.3 0.3 12 12 1334 27.2 1856000 899000 1.3607 4.95019 37 15 0 2 17 0 3.7 1.9 2.9 2.3 Bacteria Gammaproteobacteria 1430 Vibrio vulnificus YJ016 AP005352 NC_005128 Plasmid pYJ016 0.5507 69 48508 703 0.832522 cir 0 0 0 2.6 0 0.2 0 0 24 187.5 29000 48000 1.8471 4.80407 0 0 0 0 0 0 3.9 1.5 3.3 3.5 Bacteria Gammaproteobacteria 274 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis BA000021 NC_004344 Chromosome 0.7752 611 697724 1141.9 0.867786 cir 2 2 2 0.1 1.5 2 34 34 600 1.8 591000 136000 3.556 3.99382 1 0 0 0 0 0 33.4 25.2 27.6 31.5 Bacteria Gammaproteobacteria 274 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis AB063523 NC_003425 Plasmid pWb1 0.7803 0 5280 0 cir 0 0 0 1.8 0 2.4 0 0 0 2000 5.322 3.92991 33.3 22.6 27.1 33.2 Bacteria Alphaproteobacteria 30313 Wolbachia endosymbiont of Culex quinquefasciatus Pel AM999887 NC_010981 Chromosome 0.658 1385 1482455 1070.4 0.881777 cir 1 1 1 18.7 13.2 0.4 34 34 927000 1376000 3.4395 4.34353 3 2 0 0 2 0 7.5 3.5 4.7 5.9 Bacteria Alphaproteobacteria 272 Wolbachia endosymbiont of Drosophila melanogaster AE017196 NC_002978 Chromosome 0.6477 1195 1267782 1060.9 0.800328 cir 1 1 1 13.9 12.2 0.3 34 34 888 34.6 668000 271000 3.1822 4.39947 3 2 0 0 2 0 7.2 3.4 4.7 5.3 Bacteria Alphaproteobacteria 12475 Wolbachia endosymbiont strain TRS of Brugia malayi AE017321 NC_006833 Chromosome 0.6582 805 1080084 1341.7 0.669538 cir 1 1 1 4.8 4.2 0.3 34 34 652 23.5 0 401000 2.9643 4.35273 3 2 0 0 2 0 6.3 3.6 4.7 5.2 Bacteria Epsilonproteobacteria 445 Wolinella succinogenes DSM 1740 BX571656 NC_005090 Chromosome 0.5154 2044 2110355 1032.5 0.937008 cir 3 3 3 2.5 2.7 0.4 0 40 1821 12.2 3000 1187000 4.8329 4.7738 52 18 1 0 19 0 5.2 1.9 3.2 2.7 Bacteria Alphaproteobacteria 15756 Xanthobacter autotrophicus Py2 CP000782 NC_009717 Plasmid pXAUT01 0.3466 289 316164 1094 0.827991 cir 0 0 0 10.9 7.8 0.7 0 0 243000 61000 0.9732 5.65014 2 2 0 0 2 0 8.3 4.6 6.9 5.1 Bacteria Alphaproteobacteria 15756 Xanthobacter autotrophicus Py2 CP000781 NC_009720 Chromosome 0.3254 4746 5308934 1118.6 0.877275 cir 2 2 2 4.5 5.7 0.9 51 51 4828000 2724000 0.9604 5.72662 50 38 3 0 41 0 11.9 5.8 7.6 6.8 Bacteria Gammaproteobacteria 297 Xanthomonas axonopodis pv. citri str. 306 AE008923 NC_003919 Chromosome 0.3523 4312 5175554 1200.3 0.857821 cir 2 2 2 3 2 0.7 54 56 3724 15.8 0 2493000 0.3757 5.71811 73 35 0 5 42 2 9.3 4.5 6.6 5.2 Bacteria Gammaproteobacteria 297 Xanthomonas axonopodis pv. citri str. 306 AE008924 NC_003921 Plasmid pXAC33 0.3813 43 33700 783.7 0.817478 cir 0 0 0 22.9 1.4 0.2 0 0 23 87 16000 2000 0.5252 5.51815 0 0 0 0 0 0 6.1 3.7 6.4 5.1 Bacteria Gammaproteobacteria 297 Xanthomonas axonopodis pv. citri str. 306 AE008925 NC_003922 Plasmid pXAC64 0.3861 74 64920 877.3 0.863694 cir 0 0 0 16.5 1 0.4 0 0 41 80.5 52000 32000 0.5884 5.50929 0 0 0 0 0 0 5 3.4 5.2 4.2 Bacteria Gammaproteobacteria 15 Xanthomonas campestris pv. campestris str. 8004 CP000050 NC_007086 Chromosome 0.3504 4273 5148708 1204.9 0.846261 cir 2 2 2 4.6 3.4 0.8 54 55 3649 17.1 5061000 2537000 0.3784 5.71733 68 32 0 5 39 2 9.9 4.9 6.8 5.5 Bacteria Gammaproteobacteria 296 Xanthomonas campestris pv. campestris str. ATCC 33913 AE008922 NC_003902 Chromosome 0.3493 4181 5076188 1214.1 0.845365 cir 2 2 2 4.7 3.3 0.8 53 55 3644 14.7 5000 2441000 0.3739 5.72387 68 32 0 5 39 2 10 4.9 6.9 5.5 Bacteria Gammaproteobacteria 29801 Xanthomonas campestris pv. campestris str. B100 AM920689 NC_010688 Chromosome 0.3496 4513 5079002 1125.4 0.876424 cir 2 2 2 4.5 3.2 0.8 54 55 4976000 2725000 0.3813 5.72064 70 33 0 4 39 2 10 4.8 6.8 5.5 Bacteria Gammaproteobacteria 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 AM039952 NC_007508 Chromosome 0.3525 4487 5178466 1154.1 0.871919 cir 2 2 2 4.1 3 0.7 54 55 3750 19.7 46000 2764000 0.3664 5.71614 77 38 0 7 47 2 9.2 4.5 6.7 5.2 Bacteria Gammaproteobacteria 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 AM039948 NC_007504 Plasmid pXCV2 0.4341 2 1852 926 0.807775 cir 0 0 0 0 0 0 0 0 1 100 0 0 1.2419 5.22798 0 0 0 0 0 0 4.9 3.2 8 1.8 Bacteria Gammaproteobacteria 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 AM039949 NC_007505 Plasmid pXCV19 0.4024 22 19146 870.3 0.829625 cir 0 0 0 0 0 0.1 1 1 9 144.4 10000 3000 0.9663 5.4171 0 0 0 0 0 0 4.8 3.8 4.6 2.5 Bacteria Gammaproteobacteria 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 AM039950 NC_007506 Plasmid pXCV38 0.3927 43 38116 886.4 0.848909 cir 0 0 0 0 0 0.3 0 0 22 95.5 20000 5000 0.6349 5.50205 0 0 0 0 0 0 6.2 4.1 4.8 3.9 Bacteria Gammaproteobacteria 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 AM039951 NC_007507 Plasmid pXCV183 0.3951 172 182572 1061.5 0.855854 cir 0 0 0 5.1 1.3 0.4 1 1 122 41 7000 134000 0.5828 5.45633 0 0 0 0 0 0 3.9 2.8 4.4 3.2 Bacteria Gammaproteobacteria 12931 Xanthomonas oryzae pv. oryzae KACC10331 AE013598 NC_006834 Chromosome 0.3631 4538 4941439 1088.9 0.842963 cir 2 2 2 17.2 15.2 0.6 50 54 3766 20.5 4825000 2388000 0.3559 5.67262 57 26 0 2 28 0 8.2 4 5.9 4.8 Bacteria Gammaproteobacteria 16297 Xanthomonas oryzae pv. oryzae MAFF 311018 AP008229 NC_007705 Chromosome 0.363 4372 4940217 1130 0.838805 cir 2 2 2 17.6 15.2 0.6 53 53 3720 17.5 4698000 2369000 0.3552 5.67299 57 28 0 2 30 0 8.1 4 5.9 4.8 Bacteria Gammaproteobacteria 28127 Xanthomonas oryzae pv. oryzae PXO99A CP000967 NC_010717 Chromosome 0.3637 4988 5240075 1050.5 0.815259 cir 2 2 2 24.1 16.8 0.6 54 54 82000 2371000 0.3607 5.66817 64 28 0 3 31 0 8.2 3.9 5.8 4.8 Bacteria Gammaproteobacteria 271 Xylella fastidiosa 9a5c AE003849 NC_002488 Chromosome 0.4733 2766 2679306 968.7 0.832344 cir 2 2 2 7.3 5.5 0.4 49 50 1820 52 2656000 1785000 0.8734 5.19718 21 9 0 0 9 0 5.2 1.5 2.2 3.3 Bacteria Gammaproteobacteria 271 Xylella fastidiosa 9a5c AE003850 NC_002489 Plasmid pXF1.3 0.444 2 1286 643 0.860809 cir 0 0 0 0 0 0 0 0 1 100 0 0 2.8771 5.19836 0 0 0 0 0 0 8.1 0 5.8 5.1 Bacteria Gammaproteobacteria 271 Xylella fastidiosa 9a5c AE003851 NC_002490 Plasmid pXF51 0.5043 64 51158 799.3 0.825091 cir 0 0 0 4.9 0.6 0.3 0 0 35 82.9 0 18000 1.4445 5.03115 0 0 0 0 0 0 4 1.9 3.5 2.7 Bacteria Gammaproteobacteria 17823 Xylella fastidiosa M12 CP000941 NC_010513 Chromosome 0.4808 2104 2475130 1176.4 0.773897 cir 2 2 2 7 2.5 0.4 50 50 2425000 1176000 0.8713 5.16933 19 8 0 0 8 0 4.9 1.4 2.1 3.1 Bacteria Gammaproteobacteria 18457 Xylella fastidiosa M23 CP001011 NC_010577 Chromosome 0.4824 2161 2535690 1173.4 0.792814 cir 2 2 2 10.3 2.1 0.4 50 50 2516000 1205000 0.8964 5.16105 21 9 0 0 9 0 5.4 1.4 2.2 3.2 Bacteria Gammaproteobacteria 18457 Xylella fastidiosa M23 CP001012 NC_010579 Plasmid pXFAS01 0.508 40 38297 957.4 0.901246 cir 0 0 0 3.1 0 0.3 0 0 32000 14000 1.4649 5.01267 0 0 0 0 0 0 3.2 1.5 2 2.4 Bacteria Gammaproteobacteria 285 Xylella fastidiosa Temecula1 AE009443 NC_004554 Plasmid pXFPD1.3 0.4621 2 1346 673 0.690936 cir 0 0 0 0 0 0 0 0 2 0 0 0 4.0862 5.12796 0 0 0 0 0 0 9.8 2.2 6.5 2.2 Bacteria Gammaproteobacteria 285 Xylella fastidiosa Temecula1 AE009442 NC_004556 Chromosome 0.4822 2034 2519802 1238.8 0.778153 cir 2 2 2 9.7 1.9 0.4 49 49 1680 21.1 2500000 1195000 0.8894 5.16227 21 9 0 0 9 0 5.3 1.4 2.2 3.2 Bacteria Gammaproteobacteria 190 Yersinia enterocolitica subsp. enterocolitica 8081 AM286415 NC_008800 Chromosome 0.5273 4048 4615899 1140.3 0.844545 cir 8 7 7 4.8 4 0.2 82 81 3713 9 0 2225000 0.9538 4.96376 37 20 0 3 23 0 3.8 1.9 3 2.3 Bacteria Gammaproteobacteria 190 Yersinia enterocolitica subsp. enterocolitica 8081 AM286416 NC_008791 Plasmid pYVe8081 0.5608 89 67721 760.9 0.806855 cir 0 0 0 4.5 2.5 0.2 0 0 62 43.5 19000 61000 1.8369 4.77482 0 0 0 0 0 0 4.9 2.3 4.7 3 Bacteria Gammaproteobacteria 16067 Yersinia pestis Angola CP000902 NC_010157 Plasmid new_pCD 0.5536 88 68190 774.9 0.736384 cir 0 0 0 6.9 4.2 0 0 0 25000 46000 2.0076 4.80618 0 0 4.7 2.1 3.5 2.5 Bacteria Gammaproteobacteria 16067 Yersinia pestis Angola CP000901 NC_010159 Chromosome 0.524 3837 4504254 1173.9 0.767084 cir 8 7 7 7.5 7.1 0.3 70 70 3772000 2417000 1.1415 4.97143 0 0 4.6 1.8 3 2.4 Bacteria Gammaproteobacteria 16067 Yersinia pestis Angola CP000900 NC_010158 Plasmid pMT-pPCP 0.5002 120 114570 954.8 0.759379 cir 0 0 0 20.1 5.7 0 0 0 108000 37000 1.4777 5.02437 0 0 4.8 1.9 3.2 2.3 Bacteria Gammaproteobacteria 16645 Yersinia pestis Antiqua CP000309 NC_008120 Plasmid pMT 0.4976 99 96471 974.5 0.853137 cir 0 0 0 4.4 6.1 0.3 0 0 74 33.8 64000 2000 1.3185 5.03751 0 0 0 0 0 0 4.5 1.6 2.6 2 Bacteria Gammaproteobacteria 16645 Yersinia pestis Antiqua CP000308 NC_008150 Chromosome 0.523 4167 4702289 1128.5 0.838082 cir 8 7 7 8.6 6.6 0.3 68 68 3817 9.2 114000 1838000 1.149 4.97628 33 20 0 2 22 0 4.8 1.8 2.9 2.4 Bacteria Gammaproteobacteria 16645 Yersinia pestis Antiqua CP000310 NC_008121 Plasmid pPCP 0.5456 9 10777 1197.4 0.478612 cir 0 0 0 21.7 0 0 0 0 7 28.6 2000 5000 2.6445 4.83969 0 0 0 0 0 0 4.6 3.1 6.4 3.5 Bacteria Gammaproteobacteria 16645 Yersinia pestis Antiqua CP000311 NC_008122 Plasmid pCD 0.5517 89 70299 789.9 0.758133 cir 0 0 0 6.9 4.2 0.1 0 0 75 18.7 20000 69000 2.0114 4.81371 0 0 0 0 0 0 4.8 2 3.3 2.4 Bacteria Gammaproteobacteria 34 Yersinia pestis CO92 AL590842 NC_003143 Chromosome 0.5236 4008 4653728 1161.1 0.836865 cir 7 6 6 6.6 6.5 0.3 70 70 3520 13.9 0 2547000 1.1434 4.9742 31 17 0 1 18 0 4.8 1.8 3 2.4 Bacteria Gammaproteobacteria 34 Yersinia pestis CO92 AL117189 NC_003131 Plasmid pCD1 0.5516 97 70305 724.8 0.809032 cir 0 0 0 6.9 4.2 0.1 0 0 76 27.6 28000 50000 2.0112 4.81396 0 0 0 0 0 0 4.8 2 3.3 2.4 Bacteria Gammaproteobacteria 34 Yersinia pestis CO92 AL109969 NC_003132 Plasmid pPCP1 0.5473 9 9612 1068 0.572201 cir 0 0 0 0 0 0 0 0 5 80 6000 2000 2.7258 4.826 0 0 0 0 0 0 4.8 3.1 6.3 3.6 Bacteria Gammaproteobacteria 34 Yersinia pestis CO92 AL117211 NC_003134 Plasmid pMT1 0.4977 103 96210 934.1 0.865076 cir 0 0 0 0.4 4.1 0.3 0 0 66 56.1 65000 2000 1.3346 5.03763 0 0 0 0 0 0 4.7 1.7 2.7 2 Bacteria Gammaproteobacteria 288 Yersinia pestis KIM AF074611 NC_004838 Plasmid pMT-1 0.4984 115 100990 878.2 0.874671 cir 0 0 0 0.4 3.9 0.3 0 0 74 55.4 85000 47000 1.3427 5.03439 0 0 0 0 0 0 4.5 1.6 2.7 2.1 Bacteria Gammaproteobacteria 288 Yersinia pestis KIM AE009952 NC_004088 Chromosome 0.5236 4090 4600755 1124.9 0.823599 cir 8 7 7 6.7 5.5 0.3 73 73 3539 15.6 333000 2324000 1.1426 4.9745 32 18 0 2 20 0 4.8 1.8 2.9 2.5 Bacteria Gammaproteobacteria 16646 Yersinia pestis Nepal516 CP000305 NC_008149 Chromosome 0.5242 3981 4534590 1139.1 0.835555 cir 8 7 7 7 5.4 0.3 72 72 3670 8.5 4532000 1957000 1.133 4.97229 31 19 0 1 20 0 4.8 1.8 3 2.5 Bacteria Gammaproteobacteria 16646 Yersinia pestis Nepal516 CP000306 NC_008118 Plasmid pMT 0.4984 104 100918 970.4 0.843933 cir 0 0 0 0.4 3.9 0.3 0 0 73 42.5 71000 2000 1.3437 5.03476 0 0 0 0 0 0 4.5 1.6 2.7 2.1 Bacteria Gammaproteobacteria 16646 Yersinia pestis Nepal516 CP000307 NC_008119 Plasmid pPCP 0.5456 9 10778 1197.6 0.478567 cir 0 0 0 21.7 0 0 0 0 7 28.6 2000 5000 2.6443 4.8386 0 0 0 0 0 0 4.6 3.1 6.4 3.5 Bacteria Gammaproteobacteria 16700 Yersinia pestis Pestoides F CP000669 NC_009377 Plasmid CD 0.5511 88 71507 812.6 0.744626 cir 0 0 0 6.9 4.9 0.1 0 0 73 20.5 33000 10000 1.9774 4.81619 0 0 0 0 0 0 4.5 2.1 3.1 2.4 Bacteria Gammaproteobacteria 16700 Yersinia pestis Pestoides F CP000668 NC_009381 Chromosome 0.5236 3850 4517345 1173.3 0.818282 cir 8 7 7 5.4 5.4 0.3 72 72 3560 8.1 4326000 1170000 1.1331 4.97485 32 17 0 2 19 0 4.8 1.8 2.9 2.5 Bacteria Gammaproteobacteria 16700 Yersinia pestis Pestoides F CP000670 NC_009378 Plasmid MT 0.4799 131 137010 1045.9 0.860039 cir 0 0 0 0.3 3 0.3 0 0 102 28.4 99000 4000 1.2466 5.10252 0 0 0 0 0 0 4.9 1.7 2.8 2.1 Bacteria Gammaproteobacteria 10638 Yersinia pestis biovar Microtus str. 91001 AE017042 NC_005810 Chromosome 0.5235 3895 4595065 1179.7 0.813538 cir 8 7 7 6.5 5.3 0.3 72 72 3456 12.7 4592000 2733000 1.136 4.97529 33 19 0 2 21 0 4.8 1.8 2.9 2.5 Bacteria Gammaproteobacteria 10638 Yersinia pestis biovar Microtus str. 91001 AE017043 NC_005813 Plasmid pCD1 0.5515 85 70159 825.4 0.749284 cir 0 0 0 6.8 4.2 0.1 0 0 69 23.2 33000 12000 2.0154 4.81436 0 0 0 0 0 0 4.6 2 3.3 2.5 Bacteria Gammaproteobacteria 10638 Yersinia pestis biovar Microtus str. 91001 AE017044 NC_005814 Plasmid pCRY 0.5093 30 21742 724.7 0.87899 cir 0 0 0 0 0 0.1 0 0 16 87.5 4000 18000 1.8398 5.00574 0 0 0 0 0 0 4 3.7 5.5 3.1 Bacteria Gammaproteobacteria 10638 Yersinia pestis biovar Microtus str. 91001 AE017045 NC_005815 Plasmid pMT1 0.4969 122 106642 874.1 0.835018 cir 0 0 0 4 5.5 0.3 0 0 72 69.4 70000 0 1.325 5.0404 0 0 0 0 0 0 4.7 1.6 2.6 2 Bacteria Gammaproteobacteria 10638 Yersinia pestis biovar Microtus str. 91001 AE017046 NC_005816 Plasmid pPCP1 0.5474 10 9609 960.9 0.604537 cir 0 0 0 0 0 0 0 0 5 100 6000 2000 2.7266 4.82546 0 0 0 0 0 0 4.8 3.1 6.3 3.8 Bacteria Gammaproteobacteria 16070 Yersinia pseudotuberculosis IP 31758 CP000718 NC_009704 Plasmid_59kb 0.5978 64 58679 916.9 0.833859 cir 0 0 0 0.6 1 0.3 0 0 6000 32000 2.1711 4.63004 0 0 0 0 0 0 4.2 2 3.8 3 Bacteria Gammaproteobacteria 16070 Yersinia pseudotuberculosis IP 31758 CP000720 NC_009708 Chromosome 0.5246 4124 4723306 1145.3 0.830185 cir 8 7 7 5.2 3.5 0.3 86 86 4722000 2176000 1.1248 4.97164 33 20 0 2 22 0 4.9 1.9 3 2.6 Bacteria Gammaproteobacteria 16070 Yersinia pseudotuberculosis IP 31758 CP000719 NC_009705 Plasmid_153kb 0.5964 136 153140 1126 0.776055 cir 0 0 0 0.5 0.3 0.3 0 0 124000 75000 1.6854 4.6578 0 0 0 0 0 0 5.4 2.4 4 3.3 Bacteria Gammaproteobacteria 12950 Yersinia pseudotuberculosis IP 32953 BX936398 NC_006155 Chromosome 0.5239 3974 4744671 1193.9 0.835283 cir 8 7 7 4.8 2.9 0.3 85 85 3615 9.9 0 2576000 1.1208 4.97527 33 20 0 2 22 0 5 1.9 3 2.6 Bacteria Gammaproteobacteria 12950 Yersinia pseudotuberculosis IP 32953 BX936400 NC_006154 Plasmid pYptb32953 0.5541 43 27702 644.2 0.86528 cir 0 0 0 5.6 0.9 0.3 0 0 19 126.3 0 17000 2.3572 4.83199 0 0 0 0 0 0 7 2.6 4 4.3 Bacteria Gammaproteobacteria 12950 Yersinia pseudotuberculosis IP 32953 BX936399 NC_006153 Plasmid pYV 0.554 99 68525 692.2 0.805925 cir 0 0 0 8.1 4.2 0.1 0 0 71 39.4 45000 67000 2.0839 4.80295 0 0 0 0 0 0 4.7 1.9 3.5 2.6 Bacteria Gammaproteobacteria 28745 Yersinia pseudotuberculosis PB1/+ CP001048 NC_010634 Chromosome 0.5247 4150 4695619 1131.5 0.836333 cir 8 7 7 4.5 2.9 0.3 83 83 4599000 2485000 1.1266 4.97182 33 20 0 2 22 0 5 1.9 3 2.6 Bacteria Gammaproteobacteria 28745 Yersinia pseudotuberculosis PB1/+ CP001049 NC_010635 Plasmid pYPTS01 0.5531 87 69812 802.4 0.769868 cir 0 0 0 8.9 4.4 0.1 0 0 61000 13000 2.057 4.80727 0 0 0 0 0 0 5 1.7 3.5 2.7 Bacteria Gammaproteobacteria 28743 Yersinia pseudotuberculosis YPIII CP000950 NC_010465 Chromosome 0.5247 4192 4689441 1118.7 0.834634 cir 8 7 7 4.6 2.2 0.3 84 84 4654000 2201000 1.1096 4.97233 32 19 0 2 21 0 5 1.9 3 2.6 Bacteria Alphaproteobacteria 12354 Zymomonas mobilis subsp. mobilis ZM4 AE008692 NC_006526 Chromosome 0.5367 1998 2056416 1029.2 0.856707 cir 3 3 3 2.3 0.6 0.3 51 51 1576 26.8 2015000 1323000 1.9878 4.89011 14 7 2 0 9 0 4.6 2.5 4.3 3.2 Bacteria Other Bacteria 20871 uncultured Termite group 1 bacterium phylotype Rs-D17 AP009510 NS_000191 Chromosome 0.6479 761 1125857 1479.4 0.664142 cir 1 1 1 2.2 0.3 0.4 45 45 1000 658000 3.3511 4.42807 0 0 0 0 0 0 8.7 4.4 5.2 7.3 Bacteria Other Bacteria 20871 uncultured Termite group 1 bacterium phylotype Rs-D17 AP009511 NS_000192 Plasmid pTGRD1 0.6582 9 11650 1294.4 0.464034 cir 0 0 0 47.3 0 3 0 0 9000 4000 3.5279 4.40167 0 0 0 0 0 0 22.2 4.6 4.6 14.6 Bacteria Other Bacteria 20871 uncultured Termite group 1 bacterium phylotype Rs-D17 AP009512 NS_000193 Plasmid pTGRD2 0.6474 3 5701 1900.3 0.600421 cir 0 0 0 13.3 0 2.3 0 0 4000 2000 2.4908 4.38747 0 0 0 0 0 0 31.3 7.9 4.7 13 Bacteria Other Bacteria 20871 uncultured Termite group 1 bacterium phylotype Rs-D17 AP009513 NS_000194 Plasmid pTGRD3 0.6759 3 5362 1787.3 0.367027 cir 0 0 0 5.8 0 2 0 0 5000 2000 3.6554 4.28495 0 0 0 0 0 0 15.8 2.9 6.6 7.5 Archaea Euryarchaeota 19641 uncultured methanogenic archaeon RC-I AM114193 NC_009464 Chromosome 0.454 3085 3179916 1030.8 0.845888 cir 0 3 3 6.1 4.2 0.5 54 51 2578 19.7 190000 1796000 1.6419 5.12562 13 1 14 0 15 0 6.9 2.2 3.2 3.2 Bacteria Spirochaetes 3 Borrelia burgdorferi B31 GENOME3 Genome 0.718266 1639 1519856 2 1 2 33 Bacteria Spirochaetes 4 Treponema denticola ATCC 35405 GENOME4 Genome 0.6213 2767 2843201 2 2 2 44 Bacteria Spirochaetes 5 Treponema pallidum subsp. pallidum str. Nichols GENOME5 Genome 0.4722 1031 1138011 2 2 2 45 Bacteria Epsilonproteobacteria 8 Campylobacter jejuni subsp. jejuni NCTC 11168 GENOME8 Genome 0.6945 1643 1641481 3 3 3 44 Bacteria Gammaproteobacteria 9 Francisella tularensis subsp. tularensis SCHU S4 GENOME9 Genome 0.6774 1804 1892819 4 3 3 38 Bacteria Gammaproteobacteria 12 Pseudomonas fluorescens Pf0-1 GENOME12 Genome 0.3948 5736 6438405 7 6 6 73 Bacteria Betaproteobacteria 13 Ralstonia solanacearum GMI1000 GENOME13 Genome 0.330213 5120 5810922 4 4 4 57 Bacteria Gammaproteobacteria 15 Xanthomonas campestris pv. campestris str. 8004 GENOME15 Genome 0.3504 4273 5148708 2 2 2 55 Bacteria Alphaproteobacteria 17 Bradyrhizobium japonicum USDA 110 GENOME17 Genome 0.3594 8317 9105828 1 1 1 51 Bacteria Alphaproteobacteria 18 Mesorhizobium loti MAFF303099 GENOME18 Genome 0.37489 7281 7596297 2 2 2 54 Bacteria Alphaproteobacteria 19 Sinorhizobium meliloti 1021 GENOME19 Genome 0.378256 6205 6691694 3 3 3 55 Bacteria Gammaproteobacteria 21 Methylococcus capsulatus str. Bath GENOME21 Genome 0.3642 2960 3304561 2 2 2 46 Bacteria Gammaproteobacteria 22 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 GENOME22 Genome 0.6173 2942 3397754 3 3 3 43 Bacteria Betaproteobacteria 23 Neisseria gonorrhoeae FA 1090 GENOME23 Genome 0.4731 2002 2153922 4 4 4 55 Bacteria Betaproteobacteria 24 Bordetella bronchiseptica RB50 GENOME24 Genome 0.3192 5006 5339179 3 3 3 55 Bacteria Betaproteobacteria 25 Bordetella parapertussis 12822 GENOME25 Genome 0.319 4402 4773551 3 3 3 53 Bacteria Betaproteobacteria 26 Bordetella pertussis Tohama I GENOME26 Genome 0.3228 3806 4086189 3 3 3 51 Bacteria Betaproteobacteria 27 Bordetella avium 197N GENOME27 Genome 0.3842 3423 3732255 3 3 3 61 Bacteria Gammaproteobacteria 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 GENOME31 Genome 0.428513 5185 5694894 9 8 8 86 Bacteria Gammaproteobacteria 34 Yersinia pestis CO92 GENOME34 Genome 0.523539 4217 4829855 7 6 6 70 Bacteria Gammaproteobacteria 36 Vibrio cholerae O1 biovar El Tor str. N16961 GENOME36 Genome 0.5251 3828 4033464 9 8 8 98 Bacteria Gammaproteobacteria 38 Haemophilus ducreyi 35000HP GENOME38 Genome 0.6178 1717 1698955 7 6 6 48 Bacteria Gammaproteobacteria 39 Pasteurella multocida subsp. multocida str. Pm70 GENOME39 Genome 0.596 2014 2257487 7 6 6 57 Bacteria Alphaproteobacteria 40 Anaplasma marginale str. St. Maries GENOME40 Genome 0.5024 949 1197687 1 1 1 37 Bacteria Gammaproteobacteria 41 Coxiella burnetii RSA 493 GENOME41 Genome 0.574016 2052 2032674 1 1 1 42 Bacteria Alphaproteobacteria 42 Rickettsia conorii str. Malish 7 GENOME42 Genome 0.6756 1374 1268755 1 1 1 33 Bacteria Alphaproteobacteria 43 Rickettsia prowazekii str. Madrid E GENOME43 Genome 0.71 834 1111523 1 1 1 33 Bacteria Alphaproteobacteria 44 Bartonella quintana str. Toulouse GENOME44 Genome 0.612 1308 1581384 2 2 2 42 Bacteria Chlamydiae/Verrucomicrobia 45 Chlamydia trachomatis D/UW-3/CX GENOME45 Genome 0.5869 894 1042519 2 2 2 37 Bacteria Bacteroidetes/Chlorobi 46 Bacteroides fragilis NCTC 9343 GENOME46 Genome 0.568864 4308 5241700 7 6 6 73 Bacteria Bacteroidetes/Chlorobi 48 Porphyromonas gingivalis W83 GENOME48 Genome 0.5171 1909 2343476 4 4 4 53 Bacteria Gammaproteobacteria 50 Dichelobacter nodosus VCS1703A GENOME50 Genome 0.556 1280 1389350 3 3 3 45 Bacteria Deltaproteobacteria 51 Desulfovibrio vulgaris str. Hildenborough GENOME51 Genome 0.367238 3531 3773159 6 5 5 68 Bacteria Betaproteobacteria 52 Nitrosomonas europaea ATCC 19718 GENOME52 Genome 0.4928 2574 2812094 1 1 1 41 Bacteria Gammaproteobacteria 53 Acidithiobacillus ferrooxidans ATCC 23270 GENOME53 Genome 0.4123 3147 2982397 2 2 2 78 Bacteria Bacteroidetes/Chlorobi 54 Cytophaga hutchinsonii ATCC 33406 GENOME54 Genome 0.6115 3785 4433218 3 3 3 39 Bacteria Alphaproteobacteria 56 Rhodobacter sphaeroides 2.4.1 GENOME56 Genome 0.312076 4242 4603060 3 3 3 53 Bacteria Alphaproteobacteria 57 Rhodopseudomonas palustris CGA009 GENOME57 Genome 0.349671 4840 5467640 2 2 2 49 Bacteria Alphaproteobacteria 58 Rhodospirillum rubrum ATCC 11170 GENOME58 Genome 0.346193 3841 4406557 4 4 4 55 Bacteria Chloroflexi 59 Chloroflexus aurantiacus J-10-fl GENOME59 Genome 0.433 3853 5258541 3 3 3 49 Bacteria Cyanobacteria 60 Synechocystis sp. PCC 6803 GENOME60 Genome 0.526339 3564 3947019 2 2 2 42 Bacteria Firmicutes 63 Staphylococcus aureus RF122 GENOME63 Genome 0.6722 2589 2742531 6 5 5 60 Bacteria Firmicutes 64 Staphylococcus epidermidis RP62A GENOME64 Genome 0.678523 2526 2643840 7 6 6 61 Bacteria Deinococcus-Thermus 65 Deinococcus radiodurans R1 GENOME65 Genome 0.333869 3102 3284156 3 3 3 49 Bacteria Firmicutes 66 Streptococcus gordonii str. Challis substr. CH1 GENOME66 Genome 0.5949 2051 2196662 4 4 4 59 Bacteria Firmicutes 70 Enterococcus faecalis V583 GENOME70 Genome 0.626164 3265 3359974 4 4 4 68 Bacteria Firmicutes 72 Lactococcus lactis subsp. lactis Il1403 GENOME72 Genome 0.6467 2266 2365589 7 6 6 62 Bacteria Firmicutes 74 Bacillus cereus ATCC 10987 GENOME74 Genome 0.645017 5844 5432652 12 12 12 98 Bacteria Firmicutes 76 Bacillus subtilis subsp. subtilis str. 168 GENOME76 Genome 0.5648 4106 4214630 10 10 10 86 Bacteria Firmicutes 77 Clostridium acetobutylicum ATCC 824 GENOME77 Genome 0.690709 3848 4132880 11 11 11 73 Bacteria Firmicutes 78 Clostridium difficile 630 GENOME78 Genome 0.709421 3787 4298133 10 11 11 87 Bacteria Firmicutes 79 Clostridium perfringens str. 13 GENOME79 Genome 0.71484 2723 3085740 10 10 9 96 Bacteria Firmicutes 81 Clostridium tetani E88 GENOME81 Genome 0.713588 2432 2873333 6 6 6 54 Bacteria Firmicutes 82 Lactobacillus acidophilus NCFM GENOME82 Genome 0.6529 1862 1993561 4 4 3 61 Bacteria Firmicutes 84 Lactobacillus gasseri ATCC 33323 GENOME84 Genome 0.6474 1755 1894360 6 6 6 78 Bacteria Firmicutes 85 Listeria monocytogenes str. 4b F2365 GENOME85 Genome 0.6196 2821 2905187 6 6 6 67 Bacteria Firmicutes 86 Listeria innocua Clip11262 GENOME86 Genome 0.626108 3061 3093113 6 6 6 66 Bacteria Actinobacteria 87 Corynebacterium diphtheriae NCTC 13129 GENOME87 Genome 0.4652 2320 2488635 5 5 5 54 Bacteria Actinobacteria 88 Mycobacterium avium 104 GENOME88 Genome 0.3101 5120 5475491 1 1 1 46 Bacteria Actinobacteria 89 Mycobacterium bovis AF2122/97 GENOME89 Genome 0.3437 3953 4345492 1 1 1 45 Bacteria Actinobacteria 90 Mycobacterium leprae TN GENOME90 Genome 0.422 2720 3268203 1 1 1 45 Bacteria Actinobacteria 91 Mycobacterium avium subsp. paratuberculosis K-10 GENOME91 Genome 0.307 4350 4829781 1 1 1 46 Bacteria Actinobacteria 92 Mycobacterium smegmatis str. MC2 155 GENOME92 Genome 0.326 6716 6988209 2 2 2 47 Bacteria Actinobacteria 94 Thermobifida fusca YX GENOME94 Genome 0.325 3110 3642249 4 4 4 52 Bacteria Actinobacteria 95 Tropheryma whipplei str. Twist GENOME95 Genome 0.5367 808 927303 1 1 1 50 Bacteria Firmicutes 97 Mycoplasma genitalium G37 GENOME97 Genome 0.6831 476 580076 1 1 1 36 Bacteria Firmicutes 99 Mycoplasma pneumoniae M129 GENOME99 Genome 0.5999 688 816394 1 1 1 37 Bacteria Firmicutes 100 Mycoplasma pulmonis UAB CTIP GENOME100 Genome 0.7336 782 963879 2 1 1 29 Bacteria Firmicutes 101 Ureaplasma parvum serovar 3 str. ATCC 700970 GENOME101 Genome 0.745 611 751719 2 2 2 30 Archaea Euryarchaeota 102 Methanocaldococcus jannaschii DSM 2661 GENOME102 Genome 0.687029 1770 1739927 2 2 2 37 Archaea Euryarchaeota 103 Methanosarcina barkeri str. Fusaro GENOME103 Genome 0.607624 3625 4873766 0 3 3 62 Archaea Euryarchaeota 104 Archaeoglobus fulgidus DSM 4304 GENOME104 Genome 0.5142 2407 2178400 0 1 1 46 Archaea Euryarchaeota 105 Haloarcula marismortui ATCC 43049 GENOME105 Genome 0.38884 4240 4274642 3 3 3 50 Archaea Euryarchaeota 106 Halobacterium salinarum R1 GENOME106 Genome 0.342928 2886 2668776 1 1 1 47 Archaea Crenarchaeota 108 Sulfolobus solfataricus P2 GENOME108 Genome 0.6421 2995 2992245 0 1 1 46 Archaea Euryarchaeota 110 Thermoplasma acidophilum DSM 1728 GENOME110 Genome 0.5401 1478 1564906 0 1 1 45 Bacteria Thermotogae 111 Thermotoga maritima MSB8 GENOME111 Genome 0.5375 1846 1860725 1 1 1 46 Bacteria Betaproteobacteria 171 Burkholderia mallei ATCC 23344 GENOME171 Genome 0.315153 5025 5835527 3 4 3 56 Archaea Crenarchaeota 172 Pyrobaculum aerophilum str. IM2 GENOME172 Genome 0.4864 2605 2222430 0 1 1 42 Bacteria Firmicutes 176 Mycoplasma penetrans HF-2 GENOME176 Genome 0.7428 1037 1358633 1 1 1 30 Bacteria Deltaproteobacteria 177 Geobacter metallireducens GS-15 GENOME177 Genome 0.405141 3532 4011182 2 2 2 49 Bacteria Betaproteobacteria 178 Burkholderia pseudomallei K96243 GENOME178 Genome 0.319429 5855 7247547 4 4 4 60 Archaea Euryarchaeota 179 Pyrococcus abyssi GE5 GENOME179 Genome 0.552925 1784 1768562 2 1 1 46 Bacteria Alphaproteobacteria 180 Brucella melitensis 16M GENOME180 Genome 0.427757 3198 3294931 3 3 3 54 Bacteria Deltaproteobacteria 183 Lawsonia intracellularis PHE/MN1-00 GENOME183 Genome 0.669222 1344 1719014 2 2 2 44 Bacteria Actinobacteria 184 Clavibacter michiganensis subsp. sepedonicus GENOME184 Genome 0.27619 3237 3403786 2 2 2 45 Bacteria Epsilonproteobacteria 185 Helicobacter hepaticus ATCC 51449 GENOME185 Genome 0.6407 1875 1799146 1 1 1 37 Bacteria Actinobacteria 189 Streptomyces avermitilis MA-4680 GENOME189 Genome 0.292952 7673 9119895 6 6 6 68 Bacteria Gammaproteobacteria 190 Yersinia enterocolitica subsp. enterocolitica 8081 GENOME190 Genome 0.527784 4137 4683620 8 7 7 81 Bacteria Deltaproteobacteria 192 Geobacter sulfurreducens PCA GENOME192 Genome 0.3906 3447 3814139 2 2 2 49 Bacteria Firmicutes 193 Clostridium botulinum A str. ATCC 3502 GENOME193 Genome 0.71766 3671 3903260 9 9 9 80 Bacteria Alphaproteobacteria 196 Bartonella henselae str. Houston-1 GENOME196 Genome 0.6177 1612 1931047 3 2 2 43 Bacteria Alphaproteobacteria 204 Novosphingobium aromaticivorans DSM 12444 GENOME204 Genome 0.3489 3937 4233314 3 3 3 57 Bacteria Firmicutes 205 Desulfitobacterium hafniense DCB-2 GENOME205 Genome 0.5246 4883 5279134 5 5 5 74 Archaea Euryarchaeota 206 Thermoplasma volcanium GSS1 GENOME206 Genome 0.6008 1526 1584804 0 1 1 45 Archaea Euryarchaeota 207 Pyrococcus horikoshii OT3 GENOME207 Genome 0.5812 2061 1738505 2 1 1 47 Archaea Crenarchaeota 208 Hyperthermus butylicus DSM 5456 GENOME208 Genome 0.4626 1602 1667163 0 1 1 46 Archaea Crenarchaeota 211 Aeropyrum pernix K1 GENOME211 Genome 0.4369 1700 1669696 0 1 1 50 Bacteria Actinobacteria 212 Leifsonia xyli subsp. xyli str. CTCB07 GENOME212 Genome 0.3232 2030 2584158 1 1 1 45 Bacteria Cyanobacteria 213 Prochlorococcus marinus subsp. pastoris str. CCMP1986 GENOME213 Genome 0.692 1716 1657990 1 1 1 37 Bacteria Chloroflexi 214 Dehalococcoides ethenogenes 195 GENOME214 Genome 0.5115 1580 1469720 1 1 1 46 Bacteria Aquificae 215 Aquifex aeolicus VF5 GENOME215 Genome 0.566946 1553 1590791 2 2 2 44 Bacteria Cyanobacteria 216 Nostoc punctiforme PCC 73102 GENOME216 Genome 0.586503 6690 9059191 4 4 4 77 Archaea Euryarchaeota 217 Halobacterium sp. NRC-1 GENOME217 Genome 0.340694 2605 2571010 1 1 1 47 Bacteria Gammaproteobacteria 219 Haemophilus influenzae Rd KW20 GENOME219 Genome 0.6185 1709 1830138 7 6 6 58 Bacteria Cyanobacteria 220 Prochlorococcus marinus str. MIT 9313 GENOME220 Genome 0.4926 2273 2410873 2 2 2 45 Bacteria Actinobacteria 223 Mycobacterium tuberculosis CDC1551 GENOME223 Genome 0.3439 4189 4403837 1 1 1 45 Bacteria Actinobacteria 224 Mycobacterium tuberculosis H37Rv GENOME224 Genome 0.3439 3999 4411532 1 1 1 45 Bacteria Gammaproteobacteria 225 Escherichia coli str. K-12 substr. MG1655 GENOME225 Genome 0.4921 4267 4639675 8 7 7 88 Bacteria Gammaproteobacteria 226 Escherichia coli O157:H7 str. Sakai GENOME226 Genome 0.495129 5447 5594477 8 7 7 103 Bacteria Chlamydiae/Verrucomicrobia 228 Chlamydophila caviae GPIC GENOME228 Genome 0.608173 1005 1181356 1 1 1 38 Bacteria Chlamydiae/Verrucomicrobia 229 Chlamydia muridarum Nigg GENOME229 Genome 0.596921 911 1080451 2 2 2 37 Bacteria Cyanobacteria 230 Synechococcus sp. WH 8102 GENOME230 Genome 0.4059 2526 2434428 2 2 2 44 Bacteria Epsilonproteobacteria 233 Helicobacter pylori 26695 GENOME233 Genome 0.6112 1566 1667867 3 2 2 36 Bacteria Epsilonproteobacteria 234 Helicobacter pylori J99 GENOME234 Genome 0.6081 1491 1643831 2 2 2 36 Bacteria Firmicutes 235 Bacillus halodurans C-125 GENOME235 Genome 0.5631 4066 4202352 9 8 8 78 Bacteria Gammaproteobacteria 236 Salmonella enterica subsp. enterica serovar Typhi str. CT18 GENOME236 Genome 0.481324 4980 5133713 8 7 7 79 Bacteria Firmicutes 237 Staphylococcus aureus subsp. aureus NCTC 8325 GENOME237 Genome 0.6713 2892 2821361 6 5 5 60 Bacteria Firmicutes 238 Staphylococcus aureus subsp. aureus COL GENOME238 Genome 0.671844 2676 2813862 7 6 6 53 Bacteria Gammaproteobacteria 241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GENOME241 Genome 0.477627 4554 4951371 8 7 7 86 Bacteria Actinobacteria 242 Streptomyces coelicolor A3(2) GENOME242 Genome 0.280003 8215 9054847 6 6 6 65 Bacteria Cyanobacteria 244 Nostoc sp. PCC 7120 GENOME244 Genome 0.587296 6132 7211789 4 4 4 69 Bacteria Gammaproteobacteria 245 Buchnera aphidicola str. APS (Acyrthosiphon pisum) GENOME245 Genome 0.736377 574 655725 1 1 1 32 Archaea Crenarchaeota 246 Sulfolobus tokodaii str. 7 GENOME246 Genome 0.6721 2826 2694756 0 1 1 45 Bacteria Chlamydiae/Verrucomicrobia 247 Chlamydophila pneumoniae AR39 GENOME247 Genome 0.5942 1110 1229853 1 1 1 38 Bacteria Chlamydiae/Verrucomicrobia 248 Chlamydophila pneumoniae CWL029 GENOME248 Genome 0.5942 1052 1230230 1 1 1 38 Bacteria Firmicutes 249 Thermoanaerobacter tengcongensis MB4 GENOME249 Genome 0.6243 2588 2689445 4 4 4 55 Bacteria Betaproteobacteria 250 Ralstonia metallidurans CH34 GENOME250 Genome 0.364692 6319 6913352 4 4 4 62 Bacteria Betaproteobacteria 251 Neisseria meningitidis MC58 GENOME251 Genome 0.4847 2063 2272360 4 4 4 59 Bacteria Betaproteobacteria 252 Neisseria meningitidis Z2491 GENOME252 Genome 0.4819 1993 2184406 4 4 4 58 Bacteria Firmicutes 253 Carboxydothermus hydrogenoformans Z-2901 GENOME253 Genome 0.5795 2620 2401520 4 4 4 50 Bacteria Betaproteobacteria 254 Burkholderia xenovorans LB400 GENOME254 Genome 0.373681 8702 9731138 6 6 6 64 Bacteria Betaproteobacteria 255 Neisseria meningitidis FAM18 GENOME255 Genome 0.4838 1975 2194961 4 4 4 59 Bacteria Gammaproteobacteria 256 Buchnera aphidicola str. Bp (Baizongia pistaciae) GENOME256 Genome 0.746598 507 618379 1 1 1 32 Bacteria Chlamydiae/Verrucomicrobia 257 Chlamydophila pneumoniae J138 GENOME257 Genome 0.5942 1069 1226565 1 1 1 38 Bacteria Gammaproteobacteria 259 Escherichia coli O157:H7 EDL933 GENOME259 Genome 0.495469 5449 5620522 8 7 7 100 Bacteria Other Bacteria 262 Magnetococcus sp. MC-1 GENOME262 Genome 0.4583 3716 4719581 3 3 3 45 Bacteria Firmicutes 263 Staphylococcus aureus subsp. aureus Mu50 GENOME263 Genome 0.671542 2733 2903636 6 5 5 60 Bacteria Firmicutes 264 Staphylococcus aureus subsp. aureus N315 GENOME264 Genome 0.671959 2624 2839469 6 5 5 62 Bacteria Firmicutes 265 Staphylococcus aureus subsp. aureus MRSA252 GENOME265 Genome 0.6719 2744 2902619 6 5 5 60 Bacteria Firmicutes 266 Staphylococcus aureus subsp. aureus MSSA476 GENOME266 Genome 0.671828 2643 2820454 7 6 6 59 Bacteria Gammaproteobacteria 267 Pseudomonas putida KT2440 GENOME267 Genome 0.3848 5350 6181863 8 7 7 74 Bacteria Firmicutes 269 Streptococcus pyogenes M1 GAS GENOME269 Genome 0.6149 1696 1852441 6 6 6 60 Bacteria Firmicutes 270 Streptococcus pyogenes str. Manfredo GENOME270 Genome 0.6137 1819 1841271 6 6 6 66 Bacteria Gammaproteobacteria 271 Xylella fastidiosa 9a5c GENOME271 Genome 0.473867 2832 2731750 2 2 2 50 Bacteria Alphaproteobacteria 272 Wolbachia endosymbiont of Drosophila melanogaster GENOME272 Genome 0.6477 1195 1267782 1 1 1 34 Bacteria Gammaproteobacteria 274 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis GENOME274 Genome 0.775238 611 703004 2 2 2 34 Bacteria Gammaproteobacteria 275 Colwellia psychrerythraea 34H GENOME275 Genome 0.6199 4910 5373180 10 9 9 88 Bacteria Firmicutes 276 Listeria monocytogenes EGD-e GENOME276 Genome 0.6202 2855 2944528 6 6 6 67 Bacteria Firmicutes 277 Streptococcus pneumoniae TIGR4 GENOME277 Genome 0.603 2125 2160842 4 4 4 58 Bacteria Firmicutes 278 Streptococcus pneumoniae R6 GENOME278 Genome 0.6028 2043 2038615 4 4 4 58 Bacteria Firmicutes 279 Staphylococcus epidermidis ATCC 12228 GENOME279 Genome 0.679494 2485 2564615 6 5 5 60 Bacteria Alphaproteobacteria 281 Silicibacter pomeroyi DSS-3 GENOME281 Genome 0.359328 4252 4601053 3 3 3 53 Bacteria Alphaproteobacteria 283 Agrobacterium tumefaciens str. C58 GENOME283 Genome 0.409551 5301 5673465 4 4 4 53 Bacteria Firmicutes 284 Oceanobacillus iheyensis HTE831 GENOME284 Genome 0.6432 3496 3630528 8 7 7 69 Bacteria Gammaproteobacteria 285 Xylella fastidiosa Temecula1 GENOME285 Genome 0.482189 2036 2521148 2 2 2 49 Bacteria Firmicutes 286 Streptococcus pyogenes MGAS8232 GENOME286 Genome 0.6145 1845 1895017 6 6 6 67 Archaea Euryarchaeota 287 Pyrococcus furiosus DSM 3638 GENOME287 Genome 0.5923 2065 1908256 2 1 1 46 Bacteria Gammaproteobacteria 288 Yersinia pestis KIM GENOME288 Genome 0.523059 4205 4701745 8 7 7 73 Archaea Euryarchaeota 289 Methanothermobacter thermautotrophicus str. Delta H GENOME289 Genome 0.5046 1869 1751377 0 2 2 39 Archaea Euryarchaeota 290 Methanosarcina acetivorans C2A GENOME290 Genome 0.5732 4540 5751492 0 3 3 59 Bacteria Spirochaetes 293 Leptospira interrogans serovar Lai str. 56601 GENOME293 Genome 0.649801 4725 4691184 1 2 1 37 Archaea Euryarchaeota 294 Methanopyrus kandleri AV19 GENOME294 Genome 0.3884 1691 1694969 1 1 1 33 Bacteria Fusobacteria 295 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 GENOME295 Genome 0.7285 2067 2174500 5 5 5 47 Bacteria Gammaproteobacteria 296 Xanthomonas campestris pv. campestris str. ATCC 33913 GENOME296 Genome 0.3493 4181 5076188 2 2 2 55 Bacteria Gammaproteobacteria 297 Xanthomonas axonopodis pv. citri str. 306 GENOME297 Genome 0.352901 4429 5274174 2 2 2 56 Bacteria Alphaproteobacteria 298 Caulobacter crescentus CB15 GENOME298 Genome 0.3279 3737 4016947 2 2 2 51 Archaea Euryarchaeota 300 Methanosarcina mazei Go1 GENOME300 Genome 0.5852 3371 4096345 3 3 3 57 Bacteria Firmicutes 301 Streptococcus pyogenes SSI-1 GENOME301 Genome 0.6145 1861 1894275 5 5 5 57 Bacteria Bacteroidetes/Chlorobi 302 Chlorobium tepidum TLS GENOME302 Genome 0.4347 2255 2154946 2 2 2 50 Bacteria Epsilonproteobacteria 303 Campylobacter jejuni RM1221 GENOME303 Genome 0.6969 1838 1777831 3 3 3 44 Bacteria Firmicutes 304 Clostridium perfringens ATCC 13124 GENOME304 Genome 0.7162 2876 3256683 8 8 8 93 Bacteria Actinobacteria 305 Corynebacterium efficiens YS-314 GENOME305 Genome 0.3686 2942 3147090 5 5 5 56 Bacteria Firmicutes 306 Staphylococcus aureus subsp. aureus MW2 GENOME306 Genome 0.6717 2632 2820462 7 6 6 60 Bacteria Actinobacteria 307 Corynebacterium glutamicum ATCC 13032 GENOME307 Genome 0.4619 3099 3309401 6 6 6 60 Bacteria Cyanobacteria 308 Thermosynechococcus elongatus BP-1 GENOME308 Genome 0.4608 2475 2593857 1 1 1 40 Bacteria Firmicutes 309 Bacillus anthracis str. Ames GENOME309 Genome 0.6462 5311 5227293 11 11 11 95 Bacteria Gammaproteobacteria 310 Shigella flexneri 2a str. 301 GENOME310 Genome 0.49345 4703 4828821 8 7 7 97 Bacteria Firmicutes 311 Streptococcus pyogenes MGAS315 GENOME311 Genome 0.6141 1865 1900521 6 6 6 67 Bacteria Gammaproteobacteria 312 Buchnera aphidicola str. Sg (Schizaphis graminum) GENOME312 Genome 0.7467 545 641454 1 1 1 32 Bacteria Gammaproteobacteria 313 Escherichia coli CFT073 GENOME313 Genome 0.4952 5379 5231428 7 7 7 89 Bacteria Firmicutes 314 Clostridium thermocellum ATCC 27405 GENOME314 Genome 0.6101 3191 3843301 4 4 4 56 Bacteria Firmicutes 315 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 GENOME315 Genome 0.623318 2005 2075763 4 4 4 71 Bacteria Gammaproteobacteria 316 Saccharophagus degradans 2-40 GENOME316 Genome 0.5417 4008 5057531 2 2 2 41 Bacteria Firmicutes 317 Oenococcus oeni PSU-1 GENOME317 Genome 0.6211 1691 1780517 2 2 2 43 Bacteria Cyanobacteria 318 Trichodesmium erythraeum IMS101 GENOME318 Genome 0.6586 4451 7750108 1 2 2 38 Bacteria Alphaproteobacteria 320 Brucella suis 1330 GENOME320 Genome 0.427499 3273 3315175 3 3 3 55 Bacteria Gammaproteobacteria 322 Haemophilus somnus 129PT GENOME322 Genome 0.628057 1798 2012878 6 5 5 50 Bacteria Gammaproteobacteria 323 Pseudomonas syringae pv. syringae B728a GENOME323 Genome 0.4077 5136 6093698 6 5 5 64 Bacteria Alphaproteobacteria 325 Ehrlichia chaffeensis str. Arkansas GENOME325 Genome 0.699 1105 1176248 1 1 1 37 Bacteria Firmicutes 326 Streptococcus agalactiae A909 GENOME326 Genome 0.6438 1996 2127839 7 7 7 80 Bacteria Gammaproteobacteria 327 Pseudomonas fluorescens Pf-5 GENOME327 Genome 0.367 6138 7074893 6 5 5 71 Bacteria Actinobacteria 328 Bifidobacterium longum NCC2705 GENOME328 Genome 0.398725 1729 2260266 4 4 4 57 Bacteria Deltaproteobacteria 329 Desulfovibrio desulfuricans subsp. desulfuricans str. G20 GENOME329 Genome 0.4216 3775 3730232 4 4 4 66 Bacteria Firmicutes 330 Streptococcus agalactiae 2603V/R GENOME330 Genome 0.6435 2124 2160267 7 7 7 80 Bacteria Gammaproteobacteria 331 Pseudomonas aeruginosa PAO1 GENOME331 Genome 0.3344 5568 6264404 4 4 4 64 Bacteria Firmicutes 333 Streptococcus mutans UA159 GENOME333 Genome 0.6317 1960 2030921 5 5 5 65 Bacteria Firmicutes 334 Streptococcus agalactiae NEM316 GENOME334 Genome 0.6437 2134 2211485 7 7 7 80 Bacteria Gammaproteobacteria 335 Shewanella oneidensis MR-1 GENOME335 Genome 0.541115 4779 5131416 10 9 9 101 Bacteria Alphaproteobacteria 336 Anaplasma phagocytophilum HZ GENOME336 Genome 0.5836 1264 1471282 1 1 1 37 Bacteria Betaproteobacteria 339 Burkholderia cenocepacia J2315 GENOME339 Genome 0.330994 6485 8055782 6 6 6 73 Bacteria Alphaproteobacteria 344 Rhizobium leguminosarum bv. viciae 3841 GENOME344 Genome 0.391394 7285 7751309 3 3 3 52 Bacteria Gammaproteobacteria 349 Vibrio vulnificus CMCP6 GENOME349 Genome 0.533089 4538 5126797 10 9 9 111 Bacteria Gammaproteobacteria 350 Pectobacterium atrosepticum SCRI1043 GENOME350 Genome 0.4903 4492 5064019 8 7 7 76 Bacteria Firmicutes 353 Streptococcus uberis 0140J GENOME353 Genome 0.6337 1825 1852352 5 5 5 59 Bacteria Actinobacteria 354 Tropheryma whipplei TW08/27 GENOME354 Genome 0.5369 784 925938 1 1 1 51 Bacteria Chlamydiae/Verrucomicrobia 355 Chlamydophila abortus S26/3 GENOME355 Genome 0.6013 961 1144377 1 1 1 38 Bacteria Firmicutes 356 Lactobacillus plantarum WCFS1 GENOME356 Genome 0.555792 3101 3348625 6 5 5 72 Bacteria Alphaproteobacteria 357 Neorickettsia sennetsu str. Miyayama GENOME357 Genome 0.5892 932 859006 1 1 1 33 Bacteria Gammaproteobacteria 359 Pseudomonas syringae pv. tomato str. DC3000 GENOME359 Genome 0.416596 5614 6538260 6 5 5 64 Bacteria Gammaproteobacteria 360 Vibrio parahaemolyticus RIMD 2210633 GENOME360 Genome 0.546245 4832 5165770 12 11 11 126 Bacteria Chlamydiae/Verrucomicrobia 370 Chlamydophila felis Fe/C-56 GENOME370 Genome 0.606552 1013 1173791 1 1 1 38 Bacteria Gammaproteobacteria 371 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 GENOME371 Genome 0.4795 4323 4791961 8 7 7 78 Bacteria Alphaproteobacteria 377 Gluconacetobacter diazotrophicus PAl 5 GENOME377 Genome 0.336735 3938 3999591 4 4 4 55 Bacteria Firmicutes 384 Bacillus cereus ATCC 14579 GENOME384 Genome 0.647123 5255 5427083 13 13 13 108 Bacteria Gammaproteobacteria 386 Pseudomonas aeruginosa UCBPP-PA14 GENOME386 Genome 0.3371 5892 6537648 4 4 4 63 Bacteria Gammaproteobacteria 388 Haemophilus somnus 2336 GENOME388 Genome 0.6262 1980 2263857 6 5 5 48 Bacteria Firmicutes 398 Pediococcus pentosaceus ATCC 25745 GENOME398 Genome 0.6264 1755 1832387 5 5 5 55 Bacteria Bacteroidetes/Chlorobi 399 Bacteroides thetaiotaomicron VPI-5482 GENOME399 Genome 0.571369 4816 6293399 5 5 5 71 Bacteria Firmicutes 401 Lactococcus lactis subsp. cremoris SK11 GENOME401 Genome 0.642121 2504 2598348 7 6 6 62 Bacteria Firmicutes 402 Lactobacillus casei ATCC 334 GENOME402 Genome 0.534243 2771 2924325 5 5 5 59 Bacteria Firmicutes 403 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 GENOME403 Genome 0.5031 1721 1856951 9 9 9 98 Bacteria Firmicutes 404 Lactobacillus brevis ATCC 367 GENOME404 Genome 0.539407 2218 2340228 5 5 5 65 Bacteria Gammaproteobacteria 408 Shigella flexneri 2a str. 2457T GENOME408 Genome 0.4909 4073 4599354 8 7 7 100 Bacteria Firmicutes 409 Mycoplasma gallisepticum R GENOME409 Genome 0.6855 726 996422 2 2 2 32 Bacteria Planctomycetes 413 Rhodopirellula baltica SH 1 GENOME413 Genome 0.446 7325 7145576 1 1 1 76 Bacteria Cyanobacteria 419 Prochlorococcus marinus subsp. marinus str. CCMP1375 GENOME419 Genome 0.6356 1882 1751080 1 1 1 40 Bacteria Chlamydiae/Verrucomicrobia 420 Chlamydophila pneumoniae TW-183 GENOME420 Genome 0.5942 1113 1225935 1 1 1 38 Bacteria Gammaproteobacteria 443 Candidatus Blochmannia floridanus GENOME443 Genome 0.7262 589 705557 1 1 1 37 Bacteria Betaproteobacteria 444 Chromobacterium violaceum ATCC 12472 GENOME444 Genome 0.3517 4407 4751080 9 8 8 98 Bacteria Epsilonproteobacteria 445 Wolinella succinogenes DSM 1740 GENOME445 Genome 0.5154 2044 2110355 3 3 3 40 Bacteria Deltaproteobacteria 1421 Myxococcus xanthus DK 1622 GENOME1421 Genome 0.3111 7331 9139763 4 4 4 65 Bacteria Firmicutes 1422 Mycoplasma arthritidis 158L3-1 GENOME1422 Genome 0.6929 631 820453 1 1 1 33 Bacteria Gammaproteobacteria 1430 Vibrio vulnificus YJ016 GENOME1430 Genome 0.533212 5028 5260086 10 9 9 112 Archaea Nanoarchaeota 9599 Nanoarchaeum equitans Kin4-M GENOME9599 Genome 0.6844 536 490885 1 1 1 38 Bacteria Gammaproteobacteria 9605 Photorhabdus luminescens subsp. laumondii TTO1 GENOME9605 Genome 0.5717 4905 5688987 8 7 7 85 Bacteria Cyanobacteria 9606 Gloeobacter violaceus PCC 7421 GENOME9606 Genome 0.38 4430 4659019 1 1 1 44 Bacteria Alphaproteobacteria 9614 Ehrlichia ruminantium str. Welgevonden GENOME9614 Genome 0.7252 920 1516355 1 1 1 36 Bacteria Firmicutes 9615 Onion yellows phytoplasma OY-M GENOME9615 Genome 0.7226 754 860631 2 2 2 32 Bacteria Gammaproteobacteria 9618 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 GENOME9618 Genome 0.478644 4666 4944000 8 7 7 85 Bacteria Alphaproteobacteria 9619 Brucella abortus bv. 1 str. 9-941 GENOME9619 Genome 0.427763 3085 3286445 3 3 3 55 Bacteria Gammaproteobacteria 9633 Psychrobacter arcticus 273-4 GENOME9633 Genome 0.572 2147 2650701 4 4 4 49 Archaea Euryarchaeota 9634 Methanococcoides burtonii DSM 6242 GENOME9634 Genome 0.5924 2273 2575032 0 3 3 49 Bacteria Betaproteobacteria 9635 Dechloromonas aromatica RCB GENOME9635 Genome 0.4075 4171 4501104 4 4 4 64 Bacteria Alphaproteobacteria 9636 Rickettsia rickettsii str. Sheila Smith GENOME9636 Genome 0.6753 1345 1257710 1 1 1 34 Bacteria Deltaproteobacteria 9637 Bdellovibrio bacteriovorus HD100 GENOME9637 Genome 0.4935 3583 3782950 2 2 2 36 Bacteria Firmicutes 9638 Lactobacillus johnsonii NCC 533 GENOME9638 Genome 0.6539 1821 1992676 6 6 6 79 Bacteria Firmicutes 10616 Mycoplasma mycoides subsp. mycoides SC str. PG1 GENOME10616 Genome 0.7603 1016 1211703 2 2 2 30 Bacteria Deinococcus-Thermus 10617 Thermus thermophilus HB27 GENOME10617 Genome 0.305906 2210 2127482 2 2 2 47 Archaea Euryarchaeota 10632 Methanococcus maripaludis S2 GENOME10632 Genome 0.669 1722 1661137 0 3 3 36 Bacteria Gammaproteobacteria 10638 Yersinia pestis biovar Microtus str. 91001 GENOME10638 Genome 0.523302 4142 4803217 8 7 7 72 Bacteria Firmicutes 10639 Mycoplasma hyopneumoniae 7448 GENOME10639 Genome 0.7151 663 920079 1 1 1 30 Archaea Euryarchaeota 10641 Picrophilus torridus DSM 9790 GENOME10641 Genome 0.6403 1535 1545895 0 1 1 47 Bacteria Cyanobacteria 10642 Anabaena variabilis ATCC 29413 GENOME10642 Genome 0.586183 5657 7068601 4 4 4 47 Bacteria Cyanobacteria 10645 Synechococcus elongatus PCC 7942 GENOME10645 Genome 0.445736 2661 2742269 2 2 2 44 Bacteria Betaproteobacteria 10646 Ralstonia eutropha JMP134 GENOME10646 Genome 0.355654 6446 7255290 6 6 6 66 Bacteria Betaproteobacteria 10647 Methylobacillus flagellatus KT GENOME10647 Genome 0.4428 2753 2971517 2 2 2 46 Bacteria Firmicutes 10648 Moorella thermoacetica ATCC 39073 GENOME10648 Genome 0.4421 2463 2628784 1 1 1 51 Bacteria Firmicutes 10649 Exiguobacterium sibiricum 255-15 GENOME10649 Genome 0.523008 3015 3040786 9 9 9 69 Bacteria Firmicutes 10650 Mesoplasma florum L1 GENOME10650 Genome 0.7298 683 793224 2 2 2 29 Bacteria Actinobacteria 10670 Rubrobacter xylanophilus DSM 9941 GENOME10670 Genome 0.2952 3140 3225748 1 1 1 46 Bacteria Firmicutes 10675 Mycoplasma hyopneumoniae J GENOME10675 Genome 0.7148 674 897405 1 1 1 30 Bacteria Firmicutes 10676 Mycoplasma synoviae 53 GENOME10676 Genome 0.715 672 799476 3 2 2 34 Bacteria Alphaproteobacteria 10679 Rickettsia typhi str. Wilmington GENOME10679 Genome 0.7108 838 1111496 1 1 1 33 Bacteria Spirochaetes 10687 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 GENOME10687 Genome 0.649553 3658 4627366 1 2 2 37 Bacteria Actinobacteria 10689 Kineococcus radiotolerans SRS30216 GENOME10689 Genome 0.257502 4681 4956672 4 4 4 49 Bacteria Alphaproteobacteria 10690 Mesorhizobium sp. BNC1 GENOME10690 Genome 0.389017 4543 4935185 2 2 2 52 Bacteria Alphaproteobacteria 10694 Ehrlichia canis str. Jake GENOME10694 Genome 0.7104 925 1315030 1 1 1 36 Bacteria Betaproteobacteria 10695 Burkholderia sp. 383 GENOME10695 Genome 0.337262 7717 8676277 6 6 6 67 Bacteria Betaproteobacteria 10696 Burkholderia vietnamiensis G4 GENOME10696 Genome 0.342611 7617 8391070 6 6 6 67 Bacteria Firmicutes 10697 Mycoplasma mobile 163K GENOME10697 Genome 0.7505 635 777079 1 1 1 28 Bacteria Chlamydiae/Verrucomicrobia 10700 Candidatus Protochlamydia amoebophila UWE25 GENOME10700 Genome 0.6528 2031 2414465 3 3 2 35 Bacteria Betaproteobacteria 10774 Burkholderia thailandensis E264 GENOME10774 Genome 0.323719 5634 6723972 4 4 4 58 Bacteria Firmicutes 10784 Bacillus anthracis str. Ames Ancestor GENOME10784 Genome 0.647544 5617 5503926 11 11 11 95 Bacteria Betaproteobacteria 10789 Methylibium petroleiphilum PM1 GENOME10789 Genome 0.312157 4449 4643639 1 1 1 69 Bacteria Gammaproteobacteria 10790 Idiomarina loihiensis L2TR GENOME10790 Genome 0.5296 2628 2839318 4 4 4 56 Bacteria Firmicutes 10877 Bacillus thuringiensis serovar konkukian str. 97-27 GENOME10877 Genome 0.646302 5197 5314794 14 14 14 105 Bacteria Firmicutes 10878 Bacillus anthracis str. Sterne GENOME10878 Genome 0.6462 5287 5228663 11 11 11 95 Bacteria Gammaproteobacteria 11752 Haemophilus influenzae 86-028NP GENOME11752 Genome 0.6185 1792 1913428 7 6 6 58 Bacteria Gammaproteobacteria 12352 Acinetobacter sp. ADP1 GENOME12352 Genome 0.5957 3325 3598621 7 7 7 76 Bacteria Alphaproteobacteria 12354 Zymomonas mobilis subsp. mobilis ZM4 GENOME12354 Genome 0.5367 1998 2056416 3 3 3 51 Bacteria Firmicutes 12388 Bacillus licheniformis ATCC 14580 GENOME12388 Genome 0.5381 4179 4222597 7 7 7 72 Bacteria Gammaproteobacteria 12416 Pseudomonas syringae pv. phaseolicola 1448A GENOME12416 Genome 0.420818 5171 6112448 6 5 5 62 Bacteria Actinobacteria 12460 Propionibacterium acnes KPA171202 GENOME12460 Genome 0.3999 2297 2560265 3 3 3 45 Bacteria Firmicutes 12468 Bacillus cereus E33L GENOME12468 Genome 0.648746 5641 5843235 13 13 13 96 Bacteria Firmicutes 12469 Streptococcus pyogenes MGAS10394 GENOME12469 Genome 0.6131 1886 1899877 6 6 6 67 Bacteria Alphaproteobacteria 12475 Wolbachia endosymbiont strain TRS of Brugia malayi GENOME12475 Genome 0.6582 805 1080084 1 1 1 34 Bacteria Firmicutes 12508 Staphylococcus haemolyticus JCSC1435 GENOME12508 Genome 0.672217 2694 2697861 6 5 5 60 Bacteria Actinobacteria 12512 Arthrobacter aurescens TC1 GENOME12512 Genome 0.375725 4587 5226648 6 6 6 54 Bacteria Gammaproteobacteria 12513 Baumannia cicadellinicola str. Hc (Homalodisca coagulata) GENOME12513 Genome 0.6676 595 686194 2 2 2 39 Bacteria Alphaproteobacteria 12514 Brucella ovis ATCC 25840 GENOME12514 Genome 0.428022 2892 3275590 3 3 3 53 Bacteria Epsilonproteobacteria 12517 Campylobacter lari RM2100 GENOME12517 Genome 0.703835 1546 1571661 3 3 3 46 Bacteria Firmicutes 12521 Clostridium perfringens SM101 GENOME12521 Genome 0.717668 2578 2921996 10 10 10 94 Bacteria Cyanobacteria 12530 Synechococcus sp. CC9311 GENOME12530 Genome 0.4755 2892 2606748 2 2 2 44 Bacteria Spirochaetes 12554 Borrelia garinii PBi GENOME12554 Genome 0.718772 932 986914 2 2 2 33 Bacteria Bacteroidetes/Chlorobi 12606 Chlorobium limicola DSM 245 GENOME12606 Genome 0.4868 2434 2763181 2 2 2 48 Bacteria Bacteroidetes/Chlorobi 12607 Chlorobium phaeovibrioides DSM 265 GENOME12607 Genome 0.4701 1753 1966858 1 1 1 45 Bacteria Bacteroidetes/Chlorobi 12608 Chlorobium phaeobacteroides BS1 GENOME12608 Genome 0.5107 2469 2736403 2 2 2 46 Bacteria Bacteroidetes/Chlorobi 12609 Chlorobium phaeobacteroides DSM 266 GENOME12609 Genome 0.5165 2650 3133902 2 2 2 47 Bacteria Gammaproteobacteria 12624 Proteus mirabilis HI4320 GENOME12624 Genome 0.611238 3740 4099895 8 7 7 83 Bacteria Deltaproteobacteria 12634 Anaeromyxobacter dehalogenans 2CP-C GENOME12634 Genome 0.2509 4346 5013479 2 2 2 49 Bacteria Gammaproteobacteria 12636 Chromohalobacter salexigens DSM 3043 GENOME12636 Genome 0.3609 3298 3696649 5 5 5 69 Bacteria Firmicutes 12637 Clostridium beijerinckii NCIMB 8052 GENOME12637 Genome 0.7014 5020 6000632 15 14 14 94 Bacteria Acidobacteria 12638 Solibacter usitatus Ellin6076 GENOME12638 Genome 0.381 7826 9965640 2 2 2 52 Bacteria Actinobacteria 12640 Arthrobacter sp. FB24 GENOME12640 Genome 0.34608 4506 5070478 5 5 5 51 Bacteria Gammaproteobacteria 12716 Citrobacter koseri ATCC BAA-895 GENOME12716 Genome 0.461704 5031 4735357 8 7 7 83 Bacteria Gammaproteobacteria 12720 Cronobacter sakazakii ATCC BAA-894 GENOME12720 Genome 0.432634 4442 4530777 8 7 7 82 Bacteria Alphaproteobacteria 12733 Jannaschia sp. CCS1 GENOME12733 Genome 0.377583 4283 4404049 1 1 1 42 Bacteria Actinobacteria 12738 Nocardioides sp. JS614 GENOME12738 Genome 0.285617 4909 5293685 2 2 2 46 Bacteria Bacteroidetes/Chlorobi 12749 Prosthecochloris aestuarii DSM 271 GENOME12749 Genome 0.498902 2327 2579695 1 1 1 46 Bacteria Deltaproteobacteria 12751 Desulfotalea psychrophila LSv54 GENOME12751 Genome 0.533694 3236 3659634 8 7 7 64 Bacteria Gammaproteobacteria 12931 Xanthomonas oryzae pv. oryzae KACC10331 GENOME12931 Genome 0.3631 4538 4941439 2 2 2 54 Bacteria Gammaproteobacteria 12950 Yersinia pseudotuberculosis IP 32953 GENOME12950 Genome 0.524499 4116 4840898 8 7 7 85 Bacteria Alphaproteobacteria 12952 Rickettsia canadensis str. McKiel GENOME12952 Genome 0.6895 1093 1159772 1 1 1 33 Bacteria Alphaproteobacteria 12953 Rickettsia akari str. Hartford GENOME12953 Genome 0.6767 1259 1231060 1 1 1 33 Bacteria Gammaproteobacteria 12986 Vibrio fischeri ES114 GENOME12986 Genome 0.61649 3802 4284050 13 12 12 119 Bacteria Firmicutes 12994 Symbiobacterium thermophilum IAM 14863 GENOME12994 Genome 0.3133 3337 3566135 7 6 6 98 Bacteria Cyanobacteria 12997 Acaryochloris marina MBIC11017 GENOME12997 Genome 0.530466 8383 8361599 2 2 2 69 Bacteria Gammaproteobacteria 13001 Acinetobacter baumannii SDF GENOME13001 Genome 0.608834 3577 3477996 5 5 5 64 Bacteria Gammaproteobacteria 13005 Alcanivorax borkumensis SK2 GENOME13005 Genome 0.4527 2755 3120143 3 3 3 42 Bacteria Firmicutes 13006 Alkaliphilus metalliredigens QYMF GENOME13006 Genome 0.6318 4625 4929566 11 10 10 106 Bacteria Bacteroidetes/Chlorobi 13011 Pelodictyon phaeoclathratiforme BU-1 GENOME13011 Genome 0.5192 2707 3018238 3 3 3 49 Bacteria Bacteroidetes/Chlorobi 13012 Pelodictyon luteolum DSM 273 GENOME13012 Genome 0.4267 2083 2364842 2 2 2 48 Bacteria Deltaproteobacteria 13013 Syntrophobacter fumaroxidans MPOB GENOME13013 Genome 0.4005 4064 4990251 2 2 2 51 Bacteria Other Bacteria 13014 Syntrophomonas wolfei subsp. wolfei str. Goettingen GENOME13014 Genome 0.5513 2504 2936195 13 3 3 46 Archaea Euryarchaeota 13015 Methanospirillum hungatei JF-1 GENOME13015 Genome 0.5485 3139 3544738 0 4 4 51 Bacteria Gammaproteobacteria 13018 Thiomicrospira crunogena XCL-2 GENOME13018 Genome 0.5687 2196 2427734 3 3 3 43 Bacteria Epsilonproteobacteria 13019 Sulfurimonas denitrificans DSM 1251 GENOME13019 Genome 0.6554 2097 2201561 4 4 4 44 Bacteria Alphaproteobacteria 13020 Paracoccus denitrificans PD1222 GENOME13020 Genome 0.332 5077 5236194 3 3 3 53 Bacteria Betaproteobacteria 13025 Thiobacillus denitrificans ATCC 25259 GENOME13025 Genome 0.3393 2827 2909809 2 2 2 43 Bacteria Gammaproteobacteria 13030 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- GENOME13030 Genome 0.4862 4510 4600800 8 7 7 85 Bacteria Alphaproteobacteria 13040 Silicibacter sp. TM1040 GENOME13040 Genome 0.399463 3864 4153699 5 5 5 62 Bacteria Bacteroidetes/Chlorobi 13067 Bacteroides fragilis YCH46 GENOME13067 Genome 0.567918 4625 5310990 6 6 6 74 Bacteria Gammaproteobacteria 13068 Mannheimia succiniciproducens MBEL55E GENOME13068 Genome 0.5746 2384 2314078 7 6 6 60 Bacteria Firmicutes 13082 Bacillus licheniformis ATCC 14580 GENOME13082 Genome 0.5381 4196 4222645 7 7 7 72 Bacteria Gammaproteobacteria 13086 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 GENOME13086 Genome 0.4784 4093 4585229 8 7 7 82 Bacteria Actinobacteria 13117 Nocardia farcinica IFM 10152 GENOME13117 Genome 0.293111 5936 6292344 3 3 3 54 Bacteria Firmicutes 13120 Mycoplasma hyopneumoniae 232 GENOME13120 Genome 0.7144 691 892758 1 1 1 30 Bacteria Betaproteobacteria 13121 Polaromonas sp. JS666 GENOME13121 Genome 0.380273 5453 5898676 1 1 1 44 Bacteria Gammaproteobacteria 13126 Legionella pneumophila str. Lens GENOME13126 Genome 0.615805 3004 3405519 3 3 3 43 Bacteria Gammaproteobacteria 13127 Legionella pneumophila str. Paris GENOME13127 Genome 0.616637 3224 3635495 3 3 3 43 Bacteria Gammaproteobacteria 13128 Photobacterium profundum SS9 GENOME13128 Genome 0.582664 5480 6403280 19 15 15 169 Bacteria Gammaproteobacteria 13145 Shigella dysenteriae Sd197 GENOME13145 Genome 0.490312 4508 4560911 8 7 7 85 Bacteria Gammaproteobacteria 13146 Shigella boydii Sb227 GENOME13146 Genome 0.488936 4290 4646520 8 7 7 91 Bacteria Gammaproteobacteria 13151 Shigella sonnei Ss046 GENOME13151 Genome 0.492331 4476 5055316 8 7 7 98 Bacteria Firmicutes 13162 Streptococcus thermophilus LMG 18311 GENOME13162 Genome 0.6091 1889 1796846 6 6 6 67 Bacteria Firmicutes 13163 Streptococcus thermophilus CNRZ1066 GENOME13163 Genome 0.6092 1915 1796226 6 6 6 67 Bacteria Deinococcus-Thermus 13202 Thermus thermophilus HB8 GENOME13202 Genome 0.305017 2238 2116056 2 2 2 48 Archaea Euryarchaeota 13213 Thermococcus kodakarensis KOD1 GENOME13213 Genome 0.48 2306 2088737 0 1 1 46 Bacteria Betaproteobacteria 13217 Azoarcus sp. BH72 GENOME13217 Genome 0.3208 3989 4376040 4 4 4 55 Bacteria Firmicutes 13233 Geobacillus kaustophilus HTA426 GENOME13233 Genome 0.480158 3540 3592666 9 9 9 87 Bacteria Gammaproteobacteria 13239 Marinobacter aquaeolei VT8 GENOME13239 Genome 0.430748 4272 4779762 3 3 3 51 Bacteria Betaproteobacteria 13242 Aromatoleum aromaticum EbN1 GENOME13242 Genome 0.353036 4598 4727255 4 4 4 58 Bacteria Firmicutes 13280 Lactobacillus salivarius UCC118 GENOME13280 Genome 0.669606 2017 2133977 7 7 7 78 Bacteria Cyanobacteria 13282 Synechococcus elongatus PCC 6301 GENOME13282 Genome 0.4452 2525 2696255 2 2 2 44 Bacteria Firmicutes 13291 Bacillus clausii KSM-K16 GENOME13291 Genome 0.5525 4108 4303871 8 7 7 75 Bacteria Alphaproteobacteria 13325 Gluconobacter oxydans 621H GENOME13325 Genome 0.391854 2664 2922384 4 4 4 55 Bacteria Deltaproteobacteria 13337 Pelobacter carbinolicus DSM 2380 GENOME13337 Genome 0.4489 3353 3665893 2 2 2 54 Bacteria Alphaproteobacteria 13355 Ehrlichia ruminantium str. Welgevonden GENOME13355 Genome 0.7252 958 1512977 1 1 1 36 Bacteria Alphaproteobacteria 13356 Ehrlichia ruminantium str. Gardel GENOME13356 Genome 0.7249 950 1499920 1 1 1 36 Bacteria Gammaproteobacteria 13370 Actinobacillus succinogenes 130Z GENOME13370 Genome 0.5508 2079 2319663 7 6 6 60 Bacteria Alphaproteobacteria 13372 Agrobacterium vitis S4 GENOME13372 Genome 0.425269 5389 6320946 4 4 4 54 Bacteria Gammaproteobacteria 13374 Alteromonas macleodii Deep ecotype GENOME13374 Genome 0.5512 4072 4412282 6 5 5 43 Bacteria Bacteroidetes/Chlorobi 13378 Bacteroides vulgatus ATCC 8482 GENOME13378 Genome 0.578 4065 5163189 8 7 7 85 Bacteria Deltaproteobacteria 13384 Pelobacter propionicus DSM 2379 GENOME13384 Genome 0.415207 3804 4241119 4 4 4 53 Bacteria Gammaproteobacteria 13385 Shewanella amazonensis SB2B GENOME13385 Genome 0.4641 3645 4306142 9 8 8 101 Bacteria Gammaproteobacteria 13386 Shewanella baltica OS155 GENOME13386 Genome 0.537744 4489 5342896 11 10 10 117 Bacteria Gammaproteobacteria 13389 Shewanella baltica OS195 GENOME13389 Genome 0.538287 4688 5547544 11 10 10 104 Bacteria Gammaproteobacteria 13390 Shewanella denitrificans OS217 GENOME13390 Genome 0.5485 3754 4545906 9 8 8 93 Bacteria Gammaproteobacteria 13391 Shewanella frigidimarina NCIMB 400 GENOME13391 Genome 0.5842 4029 4845257 10 9 9 96 Bacteria Gammaproteobacteria 13393 Shewanella putrefaciens CN-32 GENOME13393 Genome 0.5555 3972 4659220 9 8 8 101 Bacteria Alphaproteobacteria 13402 Agrobacterium radiobacter K84 GENOME13402 Genome 0.401249 6684 7273300 3 3 3 52 Bacteria Firmicutes 13403 Bacillus amyloliquefaciens FZB42 GENOME13403 Genome 0.5352 3693 3918589 10 9 10 89 Bacteria Betaproteobacteria 13418 Polaromonas naphthalenivorans CJ2 GENOME13418 Genome 0.383163 4929 5366143 2 2 2 51 Bacteria Deinococcus-Thermus 13423 Deinococcus geothermalis DSM 11300 GENOME13423 Genome 0.335256 3062 3247018 4 4 4 48 Bacteria Firmicutes 13424 Desulfotomaculum reducens MI-1 GENOME13424 Genome 0.5772 3276 3608104 10 8 8 70 Bacteria Firmicutes 13427 Heliobacterium modesticaldum Ice1 GENOME13427 Genome 0.4302 3000 3075407 10 10 10 109 Bacteria Firmicutes 13435 Lactobacillus sakei subsp. sakei 23K GENOME13435 Genome 0.5874 1885 1884661 7 7 7 63 Bacteria Firmicutes 13443 Listeria welshimeri serovar 6b str. SLCC5334 GENOME13443 Genome 0.6365 2780 2814130 6 6 6 66 Bacteria Gammaproteobacteria 13454 Pseudoalteromonas atlantica T6c GENOME13454 Genome 0.5538 4281 5187005 5 5 5 62 Bacteria Chloroflexi 13462 Roseiflexus castenholzii DSM 13941 GENOME13462 Genome 0.3931 4330 5723298 2 2 2 48 Bacteria Other Bacteria 13466 Caldicellulosiruptor saccharolyticus DSM 8903 GENOME13466 Genome 0.6475 2679 2970275 3 3 3 46 Bacteria Betaproteobacteria 13467 Herminiimonas arsenicoxydans GENOME13467 Genome 0.4571 3333 3424307 2 2 2 45 Bacteria Alphaproteobacteria 13473 Nitrobacter hamburgensis X14 GENOME13473 Genome 0.383863 4326 5011522 1 1 1 55 Bacteria Alphaproteobacteria 13474 Nitrobacter winogradskyi Nb-255 GENOME13474 Genome 0.3795 3122 3402093 1 1 1 49 Bacteria Firmicutes 13478 Aster yellows witches-broom phytoplasma AYWB GENOME13478 Genome 0.731846 693 723970 2 2 2 32 Bacteria Alphaproteobacteria 13480 Erythrobacter litoralis HTCC2594 GENOME13480 Genome 0.3693 3011 3052398 1 1 1 43 Bacteria Bacteroidetes/Chlorobi 13485 Parabacteroides distasonis ATCC 8503 GENOME13485 Genome 0.5494 3850 4811379 7 7 7 83 Bacteria Betaproteobacteria 13490 Burkholderia ambifaria AMMD GENOME13490 Genome 0.332239 6617 7528567 6 6 6 69 Bacteria Cyanobacteria 13496 Prochlorococcus marinus str. MIT 9303 GENOME13496 Genome 0.4999 2997 2682675 2 2 2 44 Bacteria Cyanobacteria 13548 Prochlorococcus marinus str. AS9601 GENOME13548 Genome 0.6868 1921 1669886 1 1 1 39 Bacteria Cyanobacteria 13551 Prochlorococcus marinus str. MIT 9211 GENOME13551 Genome 0.6199 1855 1688963 1 1 1 40 Bacteria Spirochaetes 13597 Borrelia turicatae 91E135 GENOME13597 Genome 0.7088 818 917330 1 1 1 32 Bacteria Betaproteobacteria 13603 Ralstonia eutropha H16 GENOME13603 Genome 0.336619 6626 7416678 5 5 5 61 Bacteria Cyanobacteria 13617 Prochlorococcus marinus str. MIT 9515 GENOME13617 Genome 0.6921 1906 1704176 1 1 1 37 Bacteria Firmicutes 13623 Bacillus weihenstephanensis KBAB4 GENOME13623 Genome 0.645179 5653 5872743 14 14 14 108 Bacteria Firmicutes 13624 Bacillus cereus subsp. cytotoxis NVH 391-98 GENOME13624 Genome 0.641298 3844 4094159 13 13 13 106 Bacteria Cyanobacteria 13642 Synechococcus sp. WH 7803 GENOME13642 Genome 0.3976 2533 2366980 2 2 2 44 Bacteria Cyanobacteria 13643 Synechococcus sp. CC9605 GENOME13643 Genome 0.4078 2638 2510659 2 2 2 45 Bacteria Gammaproteobacteria 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 GENOME13649 Genome 0.354422 4726 5420152 2 2 2 57 Bacteria Cyanobacteria 13654 Synechococcus sp. RCC307 GENOME13654 Genome 0.3916 2535 2224914 1 1 1 42 Bacteria Cyanobacteria 13655 Synechococcus sp. CC9902 GENOME13655 Genome 0.4584 2304 2234828 2 2 2 45 Bacteria Actinobacteria 13693 Rhodococcus jostii RHA1 GENOME13693 Genome 0.330154 9145 9702737 4 4 4 52 Bacteria Actinobacteria 13760 Corynebacterium glutamicum ATCC 13032 GENOME13760 Genome 0.4616 3058 3282708 6 6 6 60 Bacteria Firmicutes 13773 Streptococcus thermophilus LMD-9 GENOME13773 Genome 0.609322 1716 1864178 6 6 6 67 Bacteria Gammaproteobacteria 13875 Candidatus Blochmannia pennsylvanicus str. BPEN GENOME13875 Genome 0.7044 610 791654 1 1 1 40 Bacteria Alphaproteobacteria 13884 Rickettsia felis URRWXCal2 GENOME13884 Genome 0.67487 1512 1587240 1 1 1 33 Bacteria Chlamydiae/Verrucomicrobia 13885 Chlamydia trachomatis A/HAR-13 GENOME13885 Genome 0.587359 919 1051969 2 2 2 37 Bacteria Firmicutes 13887 Streptococcus pyogenes MGAS6180 GENOME13887 Genome 0.6165 1894 1897573 6 6 6 67 Bacteria Firmicutes 13888 Streptococcus pyogenes MGAS5005 GENOME13888 Genome 0.6147 1865 1838554 6 6 6 67 Bacteria Firmicutes 13901 Thermoanaerobacter pseudethanolicus ATCC 33223 GENOME13901 Genome 0.6549 2243 2362816 2 4 4 56 Bacteria Gammaproteobacteria 13902 Shewanella sp. W3-18-1 GENOME13902 Genome 0.5537 4044 4708380 9 8 8 100 Bacteria Gammaproteobacteria 13903 Shewanella sp. MR-7 GENOME13903 Genome 0.521365 4014 4799109 10 9 9 103 Bacteria Gammaproteobacteria 13904 Shewanella sp. MR-4 GENOME13904 Genome 0.5211 3924 4706287 10 9 9 101 Bacteria Gammaproteobacteria 13905 Shewanella sp. ANA-3 GENOME13905 Genome 0.520764 4360 5251146 10 9 9 103 Bacteria Gammaproteobacteria 13906 Shewanella loihica PV-4 GENOME13906 Genome 0.4633 3859 4602594 9 8 8 95 Bacteria Alphaproteobacteria 13907 Sphingopyxis alaskensis RB2256 GENOME13907 Genome 0.345434 3195 3373713 1 1 1 45 Bacteria Betaproteobacteria 13908 Rhodoferax ferrireducens T118 GENOME13908 Genome 0.404034 4418 4969784 2 2 2 45 Bacteria Gammaproteobacteria 13909 Pseudomonas putida F1 GENOME13909 Genome 0.3814 5252 5959964 7 6 6 76 Bacteria Cyanobacteria 13910 Prochlorococcus marinus str. MIT 9312 GENOME13910 Genome 0.6879 1809 1709204 1 1 1 39 Bacteria Cyanobacteria 13911 Prochlorococcus marinus str. NATL2A GENOME13911 Genome 0.6488 1890 1842899 1 1 1 38 Bacteria Betaproteobacteria 13912 Nitrosospira multiformis ATCC 25196 GENOME13912 Genome 0.461255 2805 3234309 1 1 1 43 Bacteria Betaproteobacteria 13913 Nitrosomonas eutropha C91 GENOME13913 Genome 0.514555 2551 2781824 1 1 1 41 Archaea Crenarchaeota 13914 Ignicoccus hospitalis KIN4/I GENOME13914 Genome 0.4348 1434 1297538 0 1 1 46 Bacteria Actinobacteria 13915 Frankia sp. EAN1pec GENOME13915 Genome 0.2885 7191 8982042 3 3 3 47 Bacteria Betaproteobacteria 13918 Burkholderia cenocepacia HI2424 GENOME13918 Genome 0.332117 6919 7702840 6 6 6 67 Bacteria Betaproteobacteria 13919 Burkholderia cenocepacia AU 1054 GENOME13919 Genome 0.330742 6477 7279116 6 6 6 67 Bacteria Gammaproteobacteria 13920 Psychrobacter cryohalolentis K5 GENOME13920 Genome 0.577636 2511 3101097 4 4 4 48 Bacteria Bacteroidetes/Chlorobi 13921 Chlorobium chlorochromatii CaD3 GENOME13921 Genome 0.5572 2002 2572079 1 1 1 45 Bacteria Alphaproteobacteria 13932 Rhizobium etli CFN 42 GENOME13932 Genome 0.389725 6016 6530228 3 3 3 50 Archaea Crenarchaeota 13935 Sulfolobus acidocaldarius DSM 639 GENOME13935 Genome 0.6329 2223 2225959 0 1 1 48 Bacteria Firmicutes 13942 Streptococcus sanguinis SK36 GENOME13942 Genome 0.566 2270 2388435 4 4 4 61 Bacteria Betaproteobacteria 13943 Burkholderia mallei NCTC 10229 GENOME13943 Genome 0.315358 5510 5742303 3 4 3 56 Bacteria Betaproteobacteria 13946 Burkholderia mallei NCTC 10247 GENOME13946 Genome 0.315182 5852 5848380 3 4 3 55 Bacteria Betaproteobacteria 13947 Burkholderia mallei SAVP1 GENOME13947 Genome 0.315947 5189 5232401 2 5 2 55 Bacteria Betaproteobacteria 13953 Burkholderia pseudomallei 668 GENOME13953 Genome 0.31709 7230 7040403 4 4 4 59 Bacteria Betaproteobacteria 13954 Burkholderia pseudomallei 1710b GENOME13954 Genome 0.320199 6347 7308054 4 4 4 60 Bacteria Gammaproteobacteria 13959 Escherichia coli HS GENOME13959 Genome 0.4918 4384 4643538 8 7 7 88 Bacteria Gammaproteobacteria 13960 Escherichia coli E24377A GENOME13960 Genome 0.494391 4997 5249288 8 7 7 91 Bacteria Actinobacteria 13963 Frankia sp. CcI3 GENOME13963 Genome 0.2992 4499 5433628 2 2 2 46 Bacteria Actinobacteria 13967 Corynebacterium jeikeium K411 GENOME13967 Genome 0.386441 2120 2476822 3 3 3 50 Bacteria Alphaproteobacteria 13989 Candidatus Pelagibacter ubique HTCC1062 GENOME13989 Genome 0.7032 1354 1308759 1 1 1 32 Bacteria Gammaproteobacteria 13993 Nitrosococcus oceani ATCC 19707 GENOME13993 Genome 0.496558 3019 3522111 2 2 2 45 Bacteria Alphaproteobacteria 13996 Rickettsia bellii RML369-C GENOME13996 Genome 0.6835 1429 1522076 1 1 1 34 Archaea Euryarchaeota 15579 Methanosphaera stadtmanae DSM 3091 GENOME15579 Genome 0.7237 1534 1767403 0 4 4 42 Archaea Crenarchaeota 15582 Pyrobaculum arsenaticum DSM 13514 GENOME15582 Genome 0.4495 2298 2121076 0 1 1 43 Bacteria Firmicutes 15596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 GENOME15596 Genome 0.66814 2514 2577899 7 6 6 60 Bacteria Chloroflexi 15604 Dehalococcoides sp. CBDB1 GENOME15604 Genome 0.5297 1458 1395502 1 1 1 47 Bacteria Gammaproteobacteria 15637 Shigella boydii CDC 3083-94 GENOME15637 Genome 0.489757 4557 4874659 8 7 7 99 Bacteria Actinobacteria 15642 Mycobacterium tuberculosis F11 GENOME15642 Genome 0.3438 3950 4424435 1 1 1 45 Bacteria Thermotogae 15644 Thermotoga lettingae TMO GENOME15644 Genome 0.613 2040 2135342 1 1 1 46 Archaea Crenarchaeota 15645 Thermoproteus neutrophilus V24Sta GENOME15645 Genome 0.4009 1966 1769823 0 1 1 44 Bacteria Cyanobacteria 15660 Prochlorococcus marinus str. NATL1A GENOME15660 Genome 0.6502 2193 1864731 1 1 1 38 Bacteria Gammaproteobacteria 15667 Vibrio cholerae O395 GENOME15667 Genome 0.524614 3875 4132319 9 8 8 96 Bacteria Betaproteobacteria 15685 Acidovorax sp. JS42 GENOME15685 Genome 0.339148 4155 4585154 3 3 3 51 Bacteria Actinobacteria 15691 Mycobacterium abscessus GENOME15691 Genome 0.358529 4941 5090491 1 1 1 47 Bacteria Betaproteobacteria 15708 Acidovorax avenae subsp. citrulli AAC00-1 GENOME15708 Genome 0.3147 4709 5352772 3 3 3 53 Bacteria Gammaproteobacteria 15713 Pseudoalteromonas haloplanktis TAC125 GENOME15713 Genome 0.599119 3487 3850272 10 9 9 106 Bacteria Alphaproteobacteria 15721 Hyphomonas neptunium ATCC 15444 GENOME15721 Genome 0.3807 3505 3705021 1 1 1 43 Bacteria Betaproteobacteria 15733 Cupriavidus taiwanensis GENOME15733 Genome 0.330091 1611 6476522 5 5 5 63 Archaea Euryarchaeota 15742 Natronomonas pharaonis DSM 2160 GENOME15742 Genome 0.368806 2843 2749696 1 1 1 47 Bacteria Cyanobacteria 15746 Prochlorococcus marinus str. MIT 9301 GENOME15746 Genome 0.6866 1907 1641879 1 1 1 37 Bacteria Alphaproteobacteria 15747 Rhodopseudomonas palustris HaA2 GENOME15747 Genome 0.3396 4683 5331656 1 1 1 50 Bacteria Alphaproteobacteria 15749 Rhodopseudomonas palustris BisB5 GENOME15749 Genome 0.3519 4397 4892717 2 2 2 51 Bacteria Alphaproteobacteria 15750 Rhodopseudomonas palustris BisB18 GENOME15750 Genome 0.3504 4886 5513844 2 2 2 50 Bacteria Alphaproteobacteria 15751 Rhodopseudomonas palustris BisA53 GENOME15751 Genome 0.3556 4878 5505494 2 2 2 48 Bacteria Alphaproteobacteria 15753 Acidiphilium cryptum JF-5 GENOME15753 Genome 0.329072 3559 3963080 2 2 2 48 Bacteria Alphaproteobacteria 15754 Rhodobacter sphaeroides ATCC 17029 GENOME15754 Genome 0.310207 4132 4489380 4 4 4 55 Bacteria Alphaproteobacteria 15755 Rhodobacter sphaeroides ATCC 17025 GENOME15755 Genome 0.317688 4333 4557127 4 4 4 54 Bacteria Alphaproteobacteria 15756 Xanthobacter autotrophicus Py2 GENOME15756 Genome 0.326592 5035 5625098 2 2 2 51 Bacteria Firmicutes 15757 Staphylococcus aureus subsp. aureus JH9 GENOME15757 Genome 0.670843 2726 2937129 7 6 6 59 Bacteria Firmicutes 15758 Staphylococcus aureus subsp. aureus JH1 GENOME15758 Genome 0.670843 2780 2936936 7 6 6 60 Bacteria Gammaproteobacteria 15759 Psychrobacter sp. PRwf-1 GENOME15759 Genome 0.551638 2385 2995049 5 5 5 57 Bacteria Actinobacteria 15760 Mycobacterium gilvum PYR-GCK GENOME15760 Genome 0.322527 5579 5982829 2 2 2 47 Bacteria Actinobacteria 15761 Mycobacterium vanbaalenii PYR-1 GENOME15761 Genome 0.3221 5979 6491865 2 2 2 49 Bacteria Actinobacteria 15762 Mycobacterium sp. MCS GENOME15762 Genome 0.316168 5615 5920523 2 2 2 48 Bacteria Gammaproteobacteria 15763 Alkalilimnicola ehrlichei MLHE-1 GENOME15763 Genome 0.3247 2865 3275944 2 2 2 48 Archaea Euryarchaeota 15765 Methanosaeta thermophila PT GENOME15765 Genome 0.4645 1696 1879471 0 2 2 46 Bacteria Firmicutes 15766 Lactobacillus reuteri F275 GENOME15766 Genome 0.6113 1900 1999618 6 6 6 68 Bacteria Gammaproteobacteria 15767 Halorhodospira halophila SL1 GENOME15767 Genome 0.3202 2407 2678452 2 2 2 46 Bacteria Deltaproteobacteria 15768 Geobacter uraniireducens Rf4 GENOME15768 Genome 0.4576 4357 5136364 2 2 2 49 Bacteria Chloroflexi 15770 Dehalococcoides sp. BAV1 GENOME15770 Genome 0.5283 1371 1341892 1 1 1 46 Bacteria Acidobacteria 15771 Acidobacteria bacterium Ellin345 GENOME15771 Genome 0.4162 4777 5650368 1 1 1 47 Bacteria Firmicutes 16062 Leuconostoc citreum KM20 GENOME16062 Genome 0.611297 1823 1896614 4 4 4 70 Bacteria Gammaproteobacteria 16064 Hahella chejuensis KCTC 2396 GENOME16064 Genome 0.4613 6782 7215267 5 5 5 67 Bacteria Gammaproteobacteria 16067 Yersinia pestis Angola GENOME16067 Genome 0.523849 4045 4687014 8 7 7 70 Bacteria Gammaproteobacteria 16070 Yersinia pseudotuberculosis IP 31758 GENOME16070 Genome 0.527698 4324 4935125 8 7 7 86 Bacteria Actinobacteria 16079 Mycobacterium sp. JLS GENOME16079 Genome 0.3164 5739 6048425 2 2 2 48 Bacteria Actinobacteria 16081 Mycobacterium sp. KMS GENOME16081 Genome 0.317695 5975 6256079 2 2 2 48 Bacteria Bacteroidetes/Chlorobi 16082 Flavobacterium johnsoniae UW101 GENOME16082 Genome 0.6589 5017 6096872 6 6 6 62 Bacteria Firmicutes 16083 Alkaliphilus oremlandii OhILAs GENOME16083 Genome 0.6374 2836 3123558 9 8 8 86 Bacteria Gammaproteobacteria 16088 Francisella novicida U112 GENOME16088 Genome 0.6752 1719 1910031 4 3 3 38 Bacteria Firmicutes 16095 Mycoplasma agalactiae PG2 GENOME16095 Genome 0.7029 751 877438 2 2 2 34 Bacteria Actinobacteria 16097 Acidothermus cellulolyticus 11B GENOME16097 Genome 0.3309 2157 2443540 1 1 1 46 Bacteria Epsilonproteobacteria 16135 Campylobacter jejuni subsp. jejuni 81-176 GENOME16135 Genome 0.695249 1758 1699052 3 3 3 44 Bacteria Alphaproteobacteria 16137 Bradyrhizobium sp. BTAi1 GENOME16137 Genome 0.35194 7622 8493513 2 2 2 52 Bacteria Spirochaetes 16146 Leptospira borgpetersenii serovar Hardjo-bovis L550 GENOME16146 Genome 0.597757 2945 3931782 1 2 2 37 Bacteria Spirochaetes 16148 Leptospira borgpetersenii serovar Hardjo-bovis JB197 GENOME16148 Genome 0.597545 2880 3876235 1 2 2 37 Bacteria Spirochaetes 16153 Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) GENOME16153 Genome 0.611099 3600 3956089 2 2 2 35 Bacteria Bacteroidetes/Chlorobi 16159 Salinibacter ruber DSM 13855 GENOME16159 Genome 0.33862 2833 3587328 1 1 1 44 Bacteria Alphaproteobacteria 16180 Orientia tsutsugamushi str. Boryong GENOME16180 Genome 0.6947 2179 2127051 1 1 1 34 Bacteria Betaproteobacteria 16182 Burkholderia pseudomallei 1106a GENOME16182 Genome 0.317426 7183 7089249 4 4 4 59 Bacteria Epsilonproteobacteria 16183 Helicobacter pylori HPAG1 GENOME16183 Genome 0.609357 1544 1605736 2 2 2 36 Bacteria Firmicutes 16184 Clostridium phytofermentans ISDg GENOME16184 Genome 0.6465 3902 4847594 8 8 8 61 Bacteria Gammaproteobacteria 16187 Psychromonas ingrahamii 37 GENOME16187 Genome 0.5991 3545 4559598 12 10 10 86 Bacteria Chloroflexi 16190 Roseiflexus sp. RS-1 GENOME16190 Genome 0.3961 4517 5801598 2 2 2 48 Bacteria Alphaproteobacteria 16203 Brucella melitensis biovar Abortus 2308 GENOME16203 Genome 0.427765 3350 3278307 3 3 3 55 Bacteria Firmicutes 16208 Mycoplasma capricolum subsp. capricolum ATCC 27343 GENOME16208 Genome 0.7623 812 1010023 2 2 2 30 Bacteria Alphaproteobacteria 16217 Magnetospirillum magneticum AMB-1 GENOME16217 Genome 0.3491 4559 4967148 2 2 2 50 Bacteria Firmicutes 16220 Bacillus cereus Q1 GENOME16220 Genome 0.645345 5502 5506207 13 13 13 94 Bacteria Actinobacteria 16230 Mycobacterium ulcerans Agy99 GENOME16230 Genome 0.34611 4241 5805761 1 1 1 45 Bacteria Gammaproteobacteria 16235 Escherichia coli 536 GENOME16235 Genome 0.4948 4685 4938920 8 7 7 81 Bacteria Alphaproteobacteria 16249 Bartonella bacilliformis KC583 GENOME16249 Genome 0.6176 1283 1445021 2 2 2 44 Bacteria Cyanobacteria 16251 Synechococcus sp. JA-3-3Ab GENOME16251 Genome 0.3976 2760 2932766 2 2 2 47 Bacteria Cyanobacteria 16252 Synechococcus sp. JA-2-3Ba(2-13) GENOME16252 Genome 0.4155 2862 3046682 2 2 2 45 Bacteria Deltaproteobacteria 16258 Syntrophus aciditrophicus SB GENOME16258 Genome 0.4854 3168 3179300 1 1 1 49 Bacteria Gammaproteobacteria 16259 Escherichia coli UTI89 GENOME16259 Genome 0.493905 5211 5179971 8 7 7 89 Bacteria Deltaproteobacteria 16263 Geobacter sp. FRC-32 GENOME16263 Genome 0.4653 3798 4304501 2 2 2 49 Bacteria Epsilonproteobacteria 16293 Campylobacter fetus subsp. fetus 82-40 GENOME16293 Genome 0.6669 1719 1773615 3 3 3 43 Bacteria Gammaproteobacteria 16297 Xanthomonas oryzae pv. oryzae MAFF 311018 GENOME16297 Genome 0.363 4372 4940217 2 2 2 53 Bacteria Alphaproteobacteria 16304 Sinorhizobium medicae WSM419 GENOME16304 Genome 0.388496 6213 6817576 3 3 3 53 Bacteria Alphaproteobacteria 16306 Caulobacter sp. K31 GENOME16306 Genome 0.326546 5438 5889399 2 2 2 49 Bacteria Gammaproteobacteria 16309 Sodalis glossinidius str. morsitans GENOME16309 Genome 0.454941 2516 4292502 8 7 7 71 Bacteria Firmicutes 16313 Staphylococcus aureus subsp. aureus USA300 GENOME16313 Genome 0.673104 2604 2917469 6 5 5 53 Bacteria Epsilonproteobacteria 16319 Arcobacter butzleri RM4018 GENOME16319 Genome 0.7295 2259 2341251 5 5 5 54 Bacteria Actinobacteria 16321 Bifidobacterium adolescentis ATCC 15703 GENOME16321 Genome 0.4082 1631 2089645 6 5 5 54 Archaea Euryarchaeota 16330 Methanoculleus marisnigri JR1 GENOME16330 Genome 0.3794 2489 2478101 1 1 1 48 Archaea Crenarchaeota 16331 Thermofilum pendens Hrk 5 GENOME16331 Genome 0.423496 1876 1813393 0 1 1 39 Bacteria Actinobacteria 16342 Salinispora tropica CNB-440 GENOME16342 Genome 0.3054 4536 5183331 3 3 3 50 Bacteria Gammaproteobacteria 16351 Escherichia coli str. K-12 substr. W3110 GENOME16351 Genome 0.492 4337 4646332 8 7 7 88 Bacteria Firmicutes 16363 Streptococcus pyogenes MGAS9429 GENOME16363 Genome 0.6146 1877 1836467 6 6 6 67 Bacteria Firmicutes 16364 Streptococcus pyogenes MGAS10270 GENOME16364 Genome 0.6157 1987 1928252 6 6 6 67 Bacteria Firmicutes 16365 Streptococcus pyogenes MGAS2096 GENOME16365 Genome 0.6127 1898 1860355 6 6 6 67 Bacteria Firmicutes 16366 Streptococcus pyogenes MGAS10750 GENOME16366 Genome 0.6168 1979 1937111 6 6 6 67 Bacteria Alphaproteobacteria 16369 Anaplasma marginale str. Florida GENOME16369 Genome 0.5023 942 1202435 1 1 1 37 Bacteria Gammaproteobacteria 16372 Buchnera aphidicola str. Cc (Cinara cedri) GENOME16372 Genome 0.79797 365 422434 1 1 1 31 Bacteria Firmicutes 16374 Streptococcus pneumoniae D39 GENOME16374 Genome 0.6029 1914 2046115 4 4 4 58 Bacteria Gammaproteobacteria 16375 Shigella flexneri 5 str. 8401 GENOME16375 Genome 0.4908 4116 4574284 8 7 7 97 Bacteria Firmicutes 16377 Halothermothrix orenii H 168 GENOME16377 Genome 0.6212 2342 2578146 3 4 4 56 Bacteria Betaproteobacteria 16393 Neisseria meningitidis 053442 GENOME16393 Genome 0.483 2020 2153416 4 4 4 59 Bacteria Firmicutes 16394 Thermoanaerobacter sp. X514 GENOME16394 Genome 0.6548 2349 2457259 0 4 4 54 Bacteria Gammaproteobacteria 16400 Haemophilus influenzae PittEE GENOME16400 Genome 0.6196 1623 1813033 7 6 6 58 Bacteria Gammaproteobacteria 16401 Haemophilus influenzae PittGG GENOME16401 Genome 0.6199 1670 1887192 7 6 6 56 Bacteria Gammaproteobacteria 16421 Francisella tularensis subsp. holarctica GENOME16421 Genome 0.6785 1967 1895994 4 3 3 38 Bacteria Alphaproteobacteria 16426 Roseobacter denitrificans OCh 114 GENOME16426 Genome 0.411189 4144 4331234 1 1 1 38 Bacteria Chloroflexi 16523 Herpetosiphon aurantiacus ATCC 23779 GENOME16523 Genome 0.490975 5278 6785430 5 5 5 51 Archaea Other Archaea 16525 Candidatus Korarchaeum cryptofilum OPF8 GENOME16525 Genome 0.51 1602 1590757 0 1 1 46 Bacteria Betaproteobacteria 16549 Janthinobacterium sp. Marseille GENOME16549 Genome 0.4577 3697 4110251 2 2 2 46 Bacteria Firmicutes 16639 Desulfitobacterium hafniense Y51 GENOME16639 Genome 0.5264 5060 5727534 6 6 6 59 Bacteria Gammaproteobacteria 16645 Yersinia pestis Antiqua GENOME16645 Genome 0.522961 4364 4879836 8 7 7 68 Bacteria Gammaproteobacteria 16646 Yersinia pestis Nepal516 GENOME16646 Genome 0.523689 4094 4646286 8 7 7 72 Bacteria Betaproteobacteria 16679 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 GENOME16679 Genome 0.5517 2077 2159490 1 1 1 38 Bacteria Other Bacteria 16689 Acidithiobacillus ferrooxidans ATCC 53993 GENOME16689 Genome 0.4115 2826 2885038 2 2 2 46 Bacteria Gammaproteobacteria 16697 Aeromonas hydrophila subsp. hydrophila ATCC 7966 GENOME16697 Genome 0.3845 4122 4744448 11 10 10 128 Bacteria Gammaproteobacteria 16700 Yersinia pestis Pestoides F GENOME16700 Genome 0.522749 4069 4725862 8 7 7 72 Bacteria Chloroflexi 16708 Chloroflexus aggregans DSM 9485 GENOME16708 Genome 0.4357 3730 4684931 3 3 3 48 Bacteria Gammaproteobacteria 16718 Escherichia coli APEC O1 GENOME16718 Genome 0.496594 4890 5497653 8 7 7 96 Bacteria Thermotogae 16719 Fervidobacterium nodosum Rt17-B1 GENOME16719 Genome 0.6501 1750 1948941 2 2 2 50 Bacteria Gammaproteobacteria 16720 Pseudomonas aeruginosa PA7 GENOME16720 Genome 0.3355 6286 6588339 4 4 4 65 Bacteria Gammaproteobacteria 16721 Coxiella burnetii Dugway 5J108-111 GENOME16721 Genome 0.576249 2125 2212937 1 1 1 42 Bacteria Gammaproteobacteria 16723 Aeromonas salmonicida subsp. salmonicida A449 GENOME16723 Genome 0.418201 4437 5040536 10 9 9 110 Bacteria Actinobacteria 16725 Mycobacterium marinum M GENOME16725 Genome 0.342625 5452 6660144 1 1 1 46 Archaea Crenarchaeota 16743 Pyrobaculum islandicum DSM 4184 GENOME16743 Genome 0.504 1978 1826402 0 1 1 45 Bacteria Gammaproteobacteria 16791 Coxiella burnetii RSA 331 GENOME16791 Genome 0.573023 1975 2053744 1 1 1 42 Bacteria Gammaproteobacteria 16800 Pseudomonas entomophila L48 GENOME16800 Genome 0.3584 5168 5888780 8 7 7 78 Bacteria Gammaproteobacteria 16817 Pseudomonas stutzeri A1501 GENOME16817 Genome 0.3612 4128 4567418 4 4 4 61 Bacteria Firmicutes 16820 Clostridium novyi NT GENOME16820 Genome 0.7114 2325 2547720 10 10 10 81 Bacteria Gammaproteobacteria 16841 Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) GENOME16841 Genome 0.6597 976 1160782 1 1 1 36 Bacteria Firmicutes 16871 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 GENOME16871 Genome 0.5028 2096 1864998 9 9 9 95 Bacteria Spirochaetes 17057 Borrelia afzelii PKo GENOME17057 Genome 0.722335 1215 1201674 2 2 2 33 Bacteria Thermotogae 17089 Thermotoga petrophila RKU-1 GENOME17089 Genome 0.539 1785 1823511 1 1 1 46 Bacteria Gammaproteobacteria 17107 Stenotrophomonas maltophilia R551-3 GENOME17107 Genome 0.337 4039 4573969 5 4 4 73 Bacteria Actinobacteria 17109 Salinispora arenicola CNS-205 GENOME17109 Genome 0.3048 4917 5786361 3 3 3 52 Bacteria Alphaproteobacteria 17111 Granulibacter bethesdensis CGDNIH1 GENOME17111 Genome 0.4093 2437 2708355 3 3 3 52 Bacteria Firmicutes 17153 Streptococcus suis 05ZYH33 GENOME17153 Genome 0.5889 2186 2096309 4 4 4 56 Bacteria Firmicutes 17155 Streptococcus suis 98HAH33 GENOME17155 Genome 0.5889 2189 2095698 4 4 4 56 Bacteria Epsilonproteobacteria 17159 Campylobacter concisus 13826 GENOME17159 Genome 0.607321 2080 2099413 3 3 3 46 Bacteria Epsilonproteobacteria 17161 Campylobacter curvus 525.92 GENOME17161 Genome 0.5546 1931 1971264 3 3 3 46 Bacteria Epsilonproteobacteria 17163 Campylobacter jejuni subsp. doylei 269.97 GENOME17163 Genome 0.6943 1731 1845106 3 3 3 44 Archaea Euryarchaeota 17185 Haloquadratum walsbyi DSM 16790 GENOME17185 Genome 0.521428 2862 3179361 0 2 2 45 Bacteria Betaproteobacteria 17187 Verminephrobacter eiseniae EF01-2 GENOME17187 Genome 0.347572 4947 5597943 3 3 3 47 Bacteria Actinobacteria 17189 Bifidobacterium longum subsp. infantis ATCC 15697 GENOME17189 Genome 0.4014 2416 2832748 4 4 4 79 Bacteria Deltaproteobacteria 17227 Desulfovibrio vulgaris DP4 GENOME17227 Genome 0.368447 3091 3661391 6 5 5 68 Bacteria Alphaproteobacteria 17237 Rickettsia bellii OSU 85-389 GENOME17237 Genome 0.6837 1476 1528980 1 1 1 34 Bacteria Thermotogae 17249 Thermosipho melanesiensis BI429 GENOME17249 Genome 0.686 1879 1915238 4 4 4 50 Bacteria Epsilonproteobacteria 17251 Helicobacter acinonychis str. Sheeba GENOME17251 Genome 0.618285 1618 1557588 2 2 2 36 Bacteria Gammaproteobacteria 17265 Francisella tularensis subsp. holarctica OSU18 GENOME17265 Genome 0.6784 1555 1895727 4 3 3 38 Bacteria Alphaproteobacteria 17333 Maricaulis maris MCS10 GENOME17333 Genome 0.3727 3063 3368780 2 2 2 45 Bacteria Alphaproteobacteria 17343 Sphingomonas wittichii RW1 GENOME17343 Genome 0.320964 5345 5915246 2 2 2 48 Bacteria Gammaproteobacteria 17375 Francisella tularensis subsp. tularensis FSC198 GENOME17375 Genome 0.6774 1804 1892616 4 3 3 38 Bacteria Actinobacteria 17403 Frankia alni ACN14a GENOME17403 Genome 0.2717 6723 7497934 2 2 2 46 Bacteria Betaproteobacteria 17407 Burkholderia multivorans ATCC 17616 GENOME17407 Genome 0.333137 6259 7008622 5 5 5 65 Bacteria Betaproteobacteria 17409 Burkholderia phymatum STM815 GENOME17409 Genome 0.377064 7496 8676562 6 6 6 62 Bacteria Betaproteobacteria 17411 Burkholderia ambifaria MC40-6 GENOME17411 Genome 0.336078 6697 7642536 6 6 6 68 Bacteria Betaproteobacteria 17413 Delftia acidovorans SPH-1 GENOME17413 Genome 0.3352 6040 6767514 5 5 5 80 Bacteria Gammaproteobacteria 17415 Shewanella pealeana ATCC 700345 GENOME17415 Genome 0.5534 4241 5174581 12 11 11 143 Bacteria Alphaproteobacteria 17417 Dinoroseobacter shibae DFL 12 GENOME17417 Genome 0.344714 4187 4417868 2 2 2 44 Bacteria Firmicutes 17419 Clostridium cellulolyticum H10 GENOME17419 Genome 0.626 3390 4068724 8 8 8 63 Archaea Crenarchaeota 17421 Caldivirga maquilingensis IC-167 GENOME17421 Genome 0.569 1963 2077567 0 1 1 45 Bacteria Deltaproteobacteria 17423 Geobacter lovleyi SZ GENOME17423 Genome 0.452647 3685 3994874 2 2 2 45 Bacteria Gammaproteobacteria 17445 Marinomonas sp. MWYL1 GENOME17445 Genome 0.5741 4439 5100344 9 8 8 83 Archaea Crenarchaeota 17447 Metallosphaera sedula DSM 5348 GENOME17447 Genome 0.5377 2256 2191517 0 1 1 46 Archaea Crenarchaeota 17449 Staphylothermus marinus F1 GENOME17449 Genome 0.6427 1570 1570485 0 1 1 44 Bacteria Gammaproteobacteria 17455 Shewanella woodyi ATCC 51908 GENOME17455 Genome 0.563 4880 5935403 11 10 10 126 Bacteria Gammaproteobacteria 17457 Pseudomonas mendocina ymp GENOME17457 Genome 0.3532 4594 5072807 4 4 4 67 Bacteria Gammaproteobacteria 17459 Serratia proteamaculans 568 GENOME17459 Genome 0.449797 4942 5495657 8 7 7 85 Bacteria Gammaproteobacteria 17461 Enterobacter sp. 638 GENOME17461 Genome 0.471013 4240 4676461 8 7 7 84 Bacteria Betaproteobacteria 17463 Burkholderia phytofirmans PsJN GENOME17463 Genome 0.377125 7241 8214658 6 6 6 63 Bacteria Gammaproteobacteria 17477 Acinetobacter baumannii ATCC 17978 GENOME17477 Genome 0.610799 3368 4001457 5 5 5 70 Bacteria Gammaproteobacteria 17491 Legionella pneumophila str. Corby GENOME17491 Genome 0.6152 3206 3576470 3 3 3 44 Bacteria Gammaproteobacteria 17629 Pseudomonas putida GB-1 GENOME17629 Genome 0.3806 5409 6078430 8 7 7 74 Bacteria Betaproteobacteria 17631 Ralstonia pickettii 12J GENOME17631 Genome 0.363543 4952 5325729 3 3 3 55 Bacteria Alphaproteobacteria 17639 Parvibaculum lavamentivorans DS-1 GENOME17639 Genome 0.3767 3636 3914745 1 1 1 45 Archaea Euryarchaeota 17641 Methanococcus maripaludis C5 GENOME17641 Genome 0.670267 1822 1789046 0 3 3 36 Bacteria Gammaproteobacteria 17643 Shewanella baltica OS185 GENOME17643 Genome 0.537303 4394 5312910 11 10 10 106 Bacteria Gammaproteobacteria 17675 Shewanella piezotolerans WP3 GENOME17675 Genome 0.5671 4933 5396476 9 8 8 89 Bacteria Thermotogae 17679 Petrotoga mobilis SJ95 GENOME17679 Genome 0.6588 1898 2169548 2 2 2 48 Bacteria Deltaproteobacteria 17707 Geobacter bemidjiensis Bem GENOME17707 Genome 0.3973 4018 4615150 4 4 4 58 Bacteria Firmicutes 17711 Bacillus cereus AH820 GENOME17711 Genome 0.646895 5810 5588834 12 12 12 96 Bacteria Firmicutes 17715 Bacillus cereus AH187 GENOME17715 Genome 0.644905 5796 5599857 14 14 14 104 Bacteria Deltaproteobacteria 17729 Anaeromyxobacter sp. Fw109-5 GENOME17729 Genome 0.2647 4466 5277990 2 2 2 49 Bacteria Firmicutes 17731 Bacillus cereus B4264 GENOME17731 Genome 0.647 5408 5419036 14 14 14 108 Bacteria Firmicutes 17733 Bacillus cereus G9842 GENOME17733 Genome 0.649886 5857 5736823 13 13 13 98 Bacteria Firmicutes 17811 Lactobacillus helveticus DPC 4571 GENOME17811 Genome 0.6292 1610 2080931 4 4 4 61 Bacteria Gammaproteobacteria 17823 Xylella fastidiosa M12 GENOME17823 Genome 0.4808 2104 2475130 2 2 2 50 Bacteria Gammaproteobacteria 17827 Acinetobacter baumannii ACICU GENOME17827 Genome 0.610691 3759 3996761 6 6 6 64 Archaea Euryarchaeota 17889 Methanococcus vannielii SB GENOME17889 Genome 0.6867 1678 1720048 5 4 4 36 Bacteria Betaproteobacteria 17929 Burkholderia cenocepacia MC0-3 GENOME17929 Genome 0.334052 7008 7971389 6 6 6 67 Bacteria Epsilonproteobacteria 17953 Campylobacter jejuni subsp. jejuni 81116 GENOME17953 Genome 0.6946 1626 1628115 3 3 3 44 Bacteria Gammaproteobacteria 17977 Candidatus Carsonella ruddii PV GENOME17977 Genome 0.8344 182 159662 0 1 1 28 Bacteria Gammaproteobacteria 17985 Shewanella baltica OS223 GENOME17985 Genome 0.53738 4441 5358884 11 10 10 109 Bacteria Deltaproteobacteria 18007 Desulfococcus oleovorans Hxd3 GENOME18007 Genome 0.4383 3265 3944167 1 1 1 47 Bacteria Gammaproteobacteria 18057 Escherichia coli SE11 GENOME18057 Genome 0.492521 5002 5155626 8 7 7 90 Bacteria Actinobacteria 18059 Mycobacterium bovis BCG str. Pasteur 1173P2 GENOME18059 Genome 0.3436 3988 4374522 1 1 1 47 Bacteria Gammaproteobacteria 18083 Escherichia coli ATCC 8739 GENOME18083 Genome 0.4913 4200 4746218 8 7 7 87 Archaea Euryarchaeota 18109 Methanocorpusculum labreanum Z GENOME18109 Genome 0.4999 1739 1804962 3 3 3 52 Archaea Crenarchaeota 18111 Pyrobaculum calidifontis JCM 11548 GENOME18111 Genome 0.4285 2149 2009313 0 1 1 24 Bacteria Gammaproteobacteria 18221 Actinobacillus pleuropneumoniae L20 GENOME18221 Genome 0.587 2012 2274482 7 9 6 62 Bacteria Spirochaetes 18231 Borrelia duttonii Ly GENOME18231 Genome 0.719858 1305 1574881 1 1 1 32 Bacteria Spirochaetes 18233 Borrelia recurrentis A1 GENOME18233 Genome 0.724732 990 1242163 1 1 1 32 Bacteria Firmicutes 18255 Bacillus thuringiensis str. Al Hakam GENOME18255 Genome 0.645624 4798 5313030 14 14 14 104 Bacteria Gammaproteobacteria 18267 Candidatus Vesicomyosocius okutanii HA GENOME18267 Genome 0.6841 939 1022154 1 1 1 36 Bacteria Alphaproteobacteria 18271 Rickettsia massiliae MTU5 GENOME18271 Genome 0.674692 980 1376184 1 1 1 33 Bacteria Alphaproteobacteria 18307 Rhodospirillum centenum SW GENOME18307 Genome 0.2954 4041 4355548 4 4 4 52 Archaea Euryarchaeota 18455 Halorubrum lacusprofundi ATCC 49239 GENOME18455 Genome 0.360299 3560 3692576 3 3 3 51 Bacteria Gammaproteobacteria 18457 Xylella fastidiosa M23 GENOME18457 Genome 0.482781 2201 2573987 2 2 2 50 Bacteria Gammaproteobacteria 18459 Francisella tularensis subsp. tularensis WY96-3418 GENOME18459 Genome 0.6773 1634 1898476 4 3 3 38 Bacteria Actinobacteria 18489 Saccharopolyspora erythraea NRRL 2338 GENOME18489 Genome 0.2885 7198 8212805 4 4 4 50 Archaea Euryarchaeota 18505 Candidatus Methanoregula boonei 6A8 GENOME18505 Genome 0.4549 2450 2542943 0 1 1 48 Bacteria Firmicutes 18509 Staphylococcus aureus subsp. aureus Mu3 GENOME18509 Genome 0.6712 2699 2880168 6 5 5 60 Bacteria Cyanobacteria 18633 Prochlorococcus marinus str. MIT 9215 GENOME18633 Genome 0.6885 1983 1738790 1 1 1 39 Bacteria Alphaproteobacteria 18637 Methylobacterium extorquens PA1 GENOME18637 Genome 0.3182 4829 5471154 5 5 5 58 Archaea Euryarchaeota 18641 Methanococcus aeolicus Nankai-3 GENOME18641 Genome 0.6996 1490 1569500 0 2 2 38 Archaea Euryarchaeota 18653 Methanobrevibacter smithii ATCC 35061 GENOME18653 Genome 0.6897 1795 1853160 0 2 2 36 Bacteria Firmicutes 18655 Geobacillus thermodenitrificans NG80-2 GENOME18655 Genome 0.511381 3445 3608012 10 10 10 87 Bacteria Gammaproteobacteria 18747 Salmonella enterica subsp. enterica serovar Newport str. SL254 GENOME18747 Genome 0.477655 4805 5007719 8 7 7 85 Bacteria Actinobacteria 18773 Bifidobacterium longum DJO10A GENOME18773 Genome 0.398322 2003 2389526 4 4 4 58 Bacteria Gammaproteobacteria 18789 Shewanella sediminis HAW-EB3 GENOME18789 Genome 0.5392 4497 5517674 13 12 12 125 Bacteria Firmicutes 18797 Lactococcus lactis subsp. cremoris MG1363 GENOME18797 Genome 0.6425 2516 2529478 7 6 6 64 Bacteria Firmicutes 18801 Staphylococcus aureus subsp. aureus str. Newman GENOME18801 Genome 0.6711 2614 2878897 6 5 5 60 Bacteria Alphaproteobacteria 18809 Methylobacterium sp. 4-46 GENOME18809 Genome 0.285006 6692 7737025 6 6 6 63 Bacteria Alphaproteobacteria 18817 Methylobacterium radiotolerans JCM 2831 GENOME18817 Genome 0.289666 6431 6899110 6 6 6 60 Archaea Euryarchaeota 18819 Methanococcus maripaludis C7 GENOME18819 Genome 0.6672 1788 1772694 0 3 3 36 Bacteria Actinobacteria 18883 Mycobacterium tuberculosis H37Ra GENOME18883 Genome 0.3439 4034 4419977 1 1 1 45 Bacteria Aquificae 18889 Sulfurihydrogenibium sp. YO3AOP1 GENOME18889 Genome 0.6797 1721 1838442 3 3 3 40 Bacteria Aquificae 18891 Hydrogenobaculum sp. Y04AAS1 GENOME18891 Genome 0.6515 1629 1559514 2 2 2 45 Bacteria Epsilonproteobacteria 18963 Nitratiruptor sp. SB155-2 GENOME18963 Genome 0.6031 1857 1877931 3 3 3 45 Bacteria Epsilonproteobacteria 18965 Sulfurovum sp. NBC37-1 GENOME18965 Genome 0.5613 2466 2562277 3 3 3 44 Bacteria Firmicutes 18979 Lactobacillus fermentum IFO 3956 GENOME18979 Genome 0.4853 1843 2098685 5 5 5 57 Bacteria Firmicutes 18981 Finegoldia magna ATCC 29328 GENOME18981 Genome 0.679357 1813 1986740 4 4 4 48 Bacteria Alphaproteobacteria 18983 Orientia tsutsugamushi str. Ikeda GENOME18983 Genome 0.6949 1967 2008987 1 1 1 34 Bacteria Alphaproteobacteria 18999 Brucella abortus S19 GENOME18999 Genome 0.427763 3000 3283936 3 3 3 55 Bacteria Firmicutes 19011 Lactobacillus reuteri JCM 1112 GENOME19011 Genome 0.6112 1820 2039414 6 6 6 65 Bacteria Firmicutes 19023 Pelotomaculum thermopropionicum SI GENOME19023 Genome 0.4704 2920 3025375 2 2 2 51 Bacteria Bacteroidetes/Chlorobi 19051 Porphyromonas gingivalis ATCC 33277 GENOME19051 Genome 0.5164 2090 2354886 4 4 4 53 Bacteria Bacteroidetes/Chlorobi 19061 Gramella forsetii KT0803 GENOME19061 Genome 0.6339 3584 3798465 3 3 3 44 Bacteria Firmicutes 19065 Clostridium kluyveri DSM 555 GENOME19065 Genome 0.679601 3913 4023800 6 7 7 61 Bacteria Firmicutes 19087 Ureaplasma parvum serovar 3 str. ATCC 27815 GENOME19087 Genome 0.745 609 751679 2 2 2 30 Bacteria Gammaproteobacteria 19135 Actinobacillus pleuropneumoniae serovar 3 str. JL03 GENOME19135 Genome 0.5877 2036 2242062 7 6 6 63 Bacteria Gammaproteobacteria 19137 Coxiella burnetii CbuG_Q212 GENOME19137 Genome 0.5737 1871 2008870 1 1 1 42 Bacteria Gammaproteobacteria 19139 Coxiella burnetii CbuK_Q154 GENOME19139 Genome 0.573862 1947 2102380 1 1 1 42 Bacteria Actinobacteria 19193 Corynebacterium glutamicum R GENOME19193 Genome 0.458729 3080 3363299 6 6 6 58 Bacteria Actinobacteria 19227 Renibacterium salmoninarum ATCC 33209 GENOME19227 Genome 0.4373 3507 3155250 2 2 2 45 Bacteria Firmicutes 19259 Acholeplasma laidlawii PG-8A GENOME19259 Genome 0.6807 1380 1496992 2 2 2 36 Archaea Crenarchaeota 19265 Nitrosopumilus maritimus SCM1 GENOME19265 Genome 0.6583 1795 1645259 0 1 1 40 Bacteria Alphaproteobacteria 19267 Azorhizobium caulinodans ORS 571 GENOME19267 Genome 0.3268 4717 5369772 3 3 3 53 Bacteria Gammaproteobacteria 19393 Vibrio fischeri MJ11 GENOME19393 Genome 0.617961 4039 4503336 8 10 10 124 Bacteria Betaproteobacteria 19401 Burkholderia multivorans ATCC 17616 GENOME19401 Genome 0.333136 6230 7008810 5 5 5 65 Bacteria Actinobacteria 19423 Bifidobacterium animalis subsp. lactis AD011 GENOME19423 Genome 0.3951 1528 1933695 3 2 2 52 Bacteria Deltaproteobacteria 19449 Desulfatibacillum alkenivorans AK-01 GENOME19449 Genome 0.4552 5252 6517073 2 2 2 56 Bacteria Gammaproteobacteria 19459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 GENOME19459 Genome 0.477931 4627 4823887 8 7 7 83 Bacteria Gammaproteobacteria 19467 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GENOME19467 Genome 0.478738 4617 4917459 8 7 7 82 Bacteria Gammaproteobacteria 19469 Escherichia coli SMS-3-5 GENOME19469 Genome 0.495043 4913 5215377 8 7 7 90 Bacteria Alphaproteobacteria 19485 Ochrobactrum anthropi ATCC 49188 GENOME19485 Genome 0.438766 4799 5205777 4 4 4 58 Bacteria Firmicutes 19489 Staphylococcus aureus subsp. aureus USA300_TCH1516 GENOME19489 Genome 0.672609 2683 2899956 6 5 5 60 Bacteria Firmicutes 19517 Clostridium botulinum A str. ATCC 19397 GENOME19517 Genome 0.7179 3552 3863450 8 8 8 81 Bacteria Firmicutes 19519 Clostridium botulinum F str. Langeland GENOME19519 Genome 0.716997 3659 4012918 9 9 9 81 Bacteria Firmicutes 19521 Clostridium botulinum A str. Hall GENOME19521 Genome 0.7182 3404 3760560 8 8 8 81 Bacteria Alphaproteobacteria 19527 Methylobacterium chloromethanicum CM4 GENOME19527 Genome 0.319209 5516 6180732 5 5 5 61 Bacteria Thermotogae 19543 Thermotoga sp. RQ2 GENOME19543 Genome 0.5382 1819 1877693 1 1 1 46 Bacteria Alphaproteobacteria 19559 Methylobacterium populi BJ001 GENOME19559 Genome 0.342102 51 48556 0 0 0 0 Bacteria Gammaproteobacteria 19571 Francisella tularensis subsp. mediasiatica FSC147 GENOME19571 Genome 0.6775 1406 1893886 4 3 3 38 Bacteria Alphaproteobacteria 19575 Bradyrhizobium sp. ORS278 GENOME19575 Genome 0.3449 6752 7456587 2 2 2 50 Bacteria Bacteroidetes/Chlorobi 19617 Candidatus Sulcia muelleri GWSS GENOME19617 Genome 0.7756 227 245530 1 1 1 31 Bacteria Firmicutes 19619 Lysinibacillus sphaericus C3-41 GENOME19619 Genome 0.628645 4771 4817463 11 10 10 85 Archaea Euryarchaeota 19639 Methanococcus maripaludis C6 GENOME19639 Genome 0.6658 1826 1744193 0 3 3 36 Archaea Euryarchaeota 19641 uncultured methanogenic archaeon RC-I GENOME19641 Genome 0.454 3085 3179916 0 3 3 51 Bacteria Actinobacteria 19643 Clavibacter michiganensis subsp. michiganensis NCPPB 382 GENOME19643 Genome 0.275081 3108 3395237 2 2 2 45 Bacteria Other Bacteria 19701 Elusimicrobium minutum Pei191 GENOME19701 Genome 0.6005 1529 1643562 1 1 1 45 Bacteria Deltaproteobacteria 19743 Anaeromyxobacter sp. K GENOME19743 Genome 0.2516 4457 5061632 2 2 2 49 Bacteria Spirochaetes 19839 Borrelia burgdorferi ZS7 GENOME19839 Genome 0.717332 1239 1345494 1 1 1 33 Bacteria Gammaproteobacteria 19857 Vibrio harveyi ATCC BAA-1116 GENOME19857 Genome 0.545777 6064 6058377 11 11 10 121 Bacteria Alphaproteobacteria 19931 Phenylobacterium zucineum HLK1 GENOME19931 Genome 0.288957 3854 4379231 1 1 1 42 Bacteria Alphaproteobacteria 19943 Rickettsia rickettsii str. Iowa GENOME19943 Genome 0.6755 1384 1268175 1 1 1 34 Bacteria Bacteroidetes/Chlorobi 19979 Flavobacterium psychrophilum JIP02/86 GENOME19979 Genome 0.6746 2432 2861988 6 6 6 49 Bacteria Bacteroidetes/Chlorobi 19981 Candidatus Amoebophilus asiaticus 5a2 GENOME19981 Genome 0.6495 1283 1884364 1 1 1 35 Bacteria Other Bacteria 19989 Opitutus terrae PB90-1 GENOME19989 Genome 0.3466 4612 5957605 1 1 1 65 Bacteria Betaproteobacteria 19991 Polynucleobacter necessarius subsp. necessarius STIR1 GENOME19991 Genome 0.5444 1508 1560469 1 1 1 37 Bacteria Actinobacteria 20011 Arthrobacter chlorophenolicus A6 GENOME20011 Genome 0.340415 4590 4980870 5 5 5 88 Bacteria Betaproteobacteria 20039 Leptothrix cholodnii SP-6 GENOME20039 Genome 0.311 4363 4909403 2 2 2 50 Bacteria Gammaproteobacteria 20045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 GENOME20045 Genome 0.479404 4779 4983515 8 7 7 85 Bacteria Gammaproteobacteria 20063 Salmonella enterica subsp. enterica serovar Agona str. SL483 GENOME20063 Genome 0.48009 4614 4836638 8 7 7 84 Bacteria Spirochaetes 20067 Treponema pallidum subsp. pallidum SS14 GENOME20067 Genome 0.472 1028 1139457 2 2 2 45 Bacteria Gammaproteobacteria 20079 Escherichia coli str. K-12 substr. DH10B GENOME20079 Genome 0.4922 4200 4686137 8 7 7 87 Bacteria Epsilonproteobacteria 20083 Campylobacter hominis ATCC BAA-381 GENOME20083 Genome 0.682648 1687 1714951 3 3 3 44 Bacteria Actinobacteria 20085 Streptomyces griseus subsp. griseus NBRC 13350 GENOME20085 Genome 0.2777 7138 8545929 6 6 6 66 Bacteria Other Bacteria 20089 Akkermansia muciniphila ATCC BAA-835 GENOME20089 Genome 0.4424 2138 2664102 3 3 3 53 Bacteria Betaproteobacteria 20091 Thauera sp. MZ1T GENOME20091 Genome 0.3773 75 78374 0 0 0 0 Bacteria Deltaproteobacteria 20095 Anaeromyxobacter dehalogenans 2CP-1 GENOME20095 Genome 0.2528 4473 5029329 2 2 2 49 Bacteria Spirochaetes 20133 Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) GENOME20133 Genome 0.611099 3726 3951448 2 2 2 35 Bacteria Alphaproteobacteria 20167 Rhodopseudomonas palustris TIE-1 GENOME20167 Genome 0.3514 5246 5744041 2 2 2 52 Bacteria Alphaproteobacteria 20179 Rhizobium leguminosarum bv. trifolii WSM2304 GENOME20179 Genome 0.388225 6415 6872702 3 3 3 53 Bacteria Gammaproteobacteria 20197 Francisella tularensis subsp. holarctica FTNF002-00 GENOME20197 Genome 0.6784 1580 1890909 4 3 3 38 Bacteria Firmicutes 20207 Natranaerobius thermophilus JW/NM-WN-LF GENOME20207 Genome 0.636933 2906 3191453 4 4 4 51 Bacteria Firmicutes 20209 Macrococcus caseolyticus JCSC5402 GENOME20209 Genome 0.634338 2059 2219737 5 4 4 48 Bacteria Gammaproteobacteria 20241 Shewanella halifaxensis HAW-EB4 GENOME20241 Genome 0.5541 4278 5226917 11 10 10 125 Bacteria Alphaproteobacteria 20243 Brucella canis ATCC 23365 GENOME20243 Genome 0.427572 3251 3312769 3 3 3 55 Bacteria Other Bacteria 20247 Ureaplasma urealyticum serovar 10 str. ATCC 33699 GENOME20247 Genome 0.7423 646 874478 2 2 2 30 Bacteria Cyanobacteria 20319 Cyanothece sp. ATCC 51142 GENOME20319 Genome 0.620538 5304 5460377 2 2 2 42 Bacteria Alphaproteobacteria 20371 Brucella suis ATCC 23445 GENOME20371 Genome 0.427915 3241 3324607 3 3 3 54 Bacteria Firmicutes 20391 Bacillus pumilus SAFR-032 GENOME20391 Genome 0.5871 3681 3704465 7 7 7 70 Bacteria Alphaproteobacteria 20477 Methylobacterium nodulans ORS 2060 GENOME20477 Genome 0.315542 8309 8839022 7 7 7 73 Bacteria Cyanobacteria 20479 Cyanothece sp. PCC 7424 GENOME20479 Genome 0.614893 5710 6554169 3 3 3 44 Bacteria Cyanobacteria 20503 Cyanothece sp. PCC 8801 GENOME20503 Genome 0.602433 4367 4787694 2 2 2 43 Bacteria Gammaproteobacteria 20585 Erwinia tasmaniensis Et1/99 GENOME20585 Genome 0.466111 3696 4067864 8 7 7 81 Bacteria Alphaproteobacteria 20635 Methylocella silvestris BL2 GENOME20635 Genome 0.3692 3818 4305430 2 2 2 49 Bacteria Firmicutes 20707 Streptococcus pyogenes NZ131 GENOME20707 Genome 0.6143 1703 1815785 6 6 6 66 Archaea Euryarchaeota 20773 Thermococcus onnurineus NA1 GENOME20773 Genome 0.4873 1976 1847607 0 1 1 46 Bacteria Alphaproteobacteria 20841 Beijerinckia indica subsp. indica ATCC 9039 GENOME20841 Genome 0.430167 3784 4418616 3 3 3 52 Bacteria Other Bacteria 20871 uncultured Termite group 1 bacterium phylotype Rs-D17 GENOME20871 Genome 0.648133 776 1148570 1 1 1 45 Bacteria Thermotogae 21023 Thermotoga neapolitana DSM 4359 GENOME21023 Genome 0.5306 1937 1884562 1 1 1 48 Bacteria Firmicutes 21047 Candidatus Desulforudis audaxviator MP104C GENOME21047 Genome 0.3915 2157 2349476 2 2 2 45 Bacteria Alphaproteobacteria 21071 Gluconacetobacter diazotrophicus PAl 5 GENOME21071 Genome 0.336751 3501 3914947 4 4 4 55 Bacteria Gammaproteobacteria 21111 Acinetobacter baumannii AB0057 GENOME21111 Genome 0.608004 3801 4059242 6 6 6 73 Bacteria Chloroflexi 21119 Chloroflexus sp. Y-400-fl GENOME21119 Genome 0.4332 4159 5268950 3 3 3 49 Bacteria Other Bacteria 25335 Candidatus Phytoplasma mali GENOME25335 Genome 0.7861 497 601943 2 2 2 32 Bacteria Deltaproteobacteria 27731 Desulfovibrio vulgaris str. Miyazaki F GENOME27731 Genome 0.3289 3180 4040304 4 4 4 64 Bacteria Gammaproteobacteria 27739 Escherichia coli O157:H7 str. EC4115 GENOME27739 Genome 0.495946 5477 5704171 8 7 7 109 Bacteria Thermotogae 27767 Thermosipho africanus TCF52B GENOME27767 Genome 0.6919 1913 2016657 3 3 3 48 Bacteria Gammaproteobacteria 27803 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 GENOME27803 Genome 0.4789 5601 4858887 8 7 7 85 Bacteria Actinobacteria 27833 Kocuria rhizophila DC2201 GENOME27833 Genome 0.2884 2357 2697540 3 3 3 46 Bacteria Cyanobacteria 27835 Microcystis aeruginosa NIES-843 GENOME27835 Genome 0.5767 6312 5842795 2 2 2 42 Bacteria Gammaproteobacteria 27853 Francisella philomiragia subsp. philomiragia ATCC 25017 GENOME27853 Genome 0.67438 1915 2049711 4 3 3 39 Bacteria Alphaproteobacteria 28021 Rhizobium etli CIAT 652 GENOME28021 Genome 0.386869 6109 6448048 3 3 3 51 Bacteria Firmicutes 28035 Streptococcus pneumoniae Hungary19A-6 GENOME28035 Genome 0.6037 2155 2245615 4 4 4 58 Bacteria Alphaproteobacteria 28109 Bartonella tribocorum CIP 105476 GENOME28109 Genome 0.611738 2154 2642404 2 2 2 42 Bacteria Deltaproteobacteria 28111 Sorangium cellulosum So ce 56 GENOME28111 Genome 0.2862 9384 13033779 4 4 4 60 Bacteria Gammaproteobacteria 28127 Xanthomonas oryzae pv. oryzae PXO99A GENOME28127 Genome 0.3637 4988 5240075 2 2 2 54 Bacteria Betaproteobacteria 28135 Bordetella petrii DSM 12804 GENOME28135 Genome 0.3452 5035 5287950 3 3 3 51 Archaea Crenarchaeota 28141 Desulfurococcus kamchatkensis 1221n GENOME28141 Genome 0.5466 1471 1365223 0 1 1 48 Bacteria Firmicutes 28245 Anoxybacillus flavithermus WK1 GENOME28245 Genome 0.5822 2832 2846746 8 8 8 77 Bacteria Cyanobacteria 28247 Synechococcus sp. PCC 7002 GENOME28247 Genome 0.508139 3186 3409935 2 2 2 44 Bacteria Gammaproteobacteria 28329 Cellvibrio japonicus Ueda107 GENOME28329 Genome 0.4801 3754 4576573 3 3 3 48 Bacteria Cyanobacteria 28337 Cyanothece sp. PCC 7425 GENOME28337 Genome 0.493505 5327 5786110 2 2 2 47 Bacteria Gammaproteobacteria 28471 Klebsiella pneumoniae 342 GENOME28471 Genome 0.431273 5768 5920257 9 8 8 88 Bacteria Firmicutes 28505 Clostridium botulinum B1 str. Okra GENOME28505 Genome 0.71768 3852 4107013 9 9 9 82 Bacteria Firmicutes 28507 Clostridium botulinum A3 str. Loch Maree GENOME28507 Genome 0.718572 3984 4259691 9 9 9 81 Bacteria Chlamydiae/Verrucomicrobia 28583 Chlamydia trachomatis 434/Bu GENOME28583 Genome 0.5867 889 1038842 2 2 2 37 Bacteria Chlamydiae/Verrucomicrobia 28585 Chlamydia trachomatis L2b/UCH-1/proctitis GENOME28585 Genome 0.5867 889 1038869 2 2 2 37 Bacteria Gammaproteobacteria 28743 Yersinia pseudotuberculosis YPIII GENOME28743 Genome 0.5247 4192 4689441 8 7 7 84 Bacteria Gammaproteobacteria 28745 Yersinia pseudotuberculosis PB1/+ GENOME28745 Genome 0.525116 4237 4765431 8 7 7 83 Bacteria Alphaproteobacteria 28805 Oligotropha carboxidovorans OM5 GENOME28805 Genome 0.376 3722 3745629 1 1 1 49 Bacteria Firmicutes 28855 Clostridium botulinum E3 str. Alaska E43 GENOME28855 Genome 0.7264 3256 3659644 12 11 11 79 Bacteria Firmicutes 28857 Clostridium botulinum B str. Eklund 17B GENOME28857 Genome 0.725217 3527 3847969 12 11 11 77 Bacteria Gammaproteobacteria 28921 Acinetobacter baumannii AYE GENOME28921 Genome 0.606842 3789 4048735 6 6 6 72 Bacteria Other Bacteria 28995 Methylacidiphilum infernorum V4 GENOME28995 Genome 0.5452 2472 2287145 1 1 1 46 Bacteria Bacteroidetes/Chlorobi 29025 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 GENOME29025 Genome 0.670501 852 1224919 1 2 1 38 Bacteria Epsilonproteobacteria 29045 Helicobacter pylori Shi470 GENOME29045 Genome 0.6109 1569 1608548 2 2 2 36 Bacteria Firmicutes 29047 Streptococcus pneumoniae G54 GENOME29047 Genome 0.6032 2115 2078953 4 4 4 58 Bacteria Other Bacteria 29175 Dictyoglomus turgidum DSM 6724 GENOME29175 Genome 0.6604 1744 1855560 2 2 2 47 Bacteria Gammaproteobacteria 29177 Thioalkalivibrio sp. HL-EbGR7 GENOME29177 Genome 0.3494 3283 3464554 1 1 1 44 Bacteria Firmicutes 29179 Streptococcus pneumoniae CGSP14 GENOME29179 Genome 0.6054 2206 2209198 4 4 4 58 Bacteria Actinobacteria 29211 Corynebacterium urealyticum DSM 7109 GENOME29211 Genome 0.3581 2024 2369219 3 3 3 51 Bacteria Bacteroidetes/Chlorobi 29213 Chlorobaculum parvum NCIB 8327 GENOME29213 Genome 0.442 2043 2289249 2 2 2 49 Bacteria Bacteroidetes/Chlorobi 29215 Chloroherpeton thalassium ATCC 35110 GENOME29215 Genome 0.5496 2710 3293456 1 1 1 44 Bacteria Betaproteobacteria 29335 Neisseria gonorrhoeae NCCP11945 GENOME29335 Genome 0.476317 2674 2236178 4 4 4 55 Archaea Euryarchaeota 29381 Candidatus Methanosphaerula palustris E1-9c GENOME29381 Genome 0.4465 2655 2922917 0 3 3 56 Bacteria Firmicutes 29407 Anaerocellum thermophilum DSM 6725 GENOME29407 Genome 0.648108 2666 2931662 3 3 3 47 Bacteria Firmicutes 29409 Listeria monocytogenes HCC23 GENOME29409 Genome 0.6181 2974 2976212 6 6 6 67 Bacteria Firmicutes 29469 Candidatus Phytoplasma australiense GENOME29469 Genome 0.7258 839 879959 2 2 2 35 Bacteria Deltaproteobacteria 29493 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 GENOME29493 Genome 0.4193 2356 2873437 3 3 3 52 Bacteria Spirochaetes 29637 Borrelia hermsii DAH GENOME29637 Genome 0.7017 819 922307 1 1 1 32 Bacteria Gammaproteobacteria 29801 Xanthomonas campestris pv. campestris str. B100 GENOME29801 Genome 0.3496 4513 5079002 2 2 2 55 Bacteria Gammaproteobacteria 29909 Actinobacillus pleuropneumoniae serovar 7 str. AP76 GENOME29909 Genome 0.587761 2142 2345435 7 6 6 62 Bacteria Betaproteobacteria 29975 Diaphorobacter sp. TPSY GENOME29975 Genome 0.3317 3479 3796573 3 3 3 53 Bacteria Alphaproteobacteria 30313 Wolbachia endosymbiont of Culex quinquefasciatus Pel GENOME30313 Genome 0.658 1385 1482455 1 1 1 34 Bacteria Gammaproteobacteria 30351 Stenotrophomonas maltophilia K279a GENOME30351 Genome 0.3368 4430 4851126 4 4 4 74 Bacteria Firmicutes 30359 Lactobacillus casei BL23 GENOME30359 Genome 0.5366 3044 3079196 5 5 5 60 Bacteria Gammaproteobacteria 30687 Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 GENOME30687 Genome 0.4783 4318 4685848 8 7 7 83 Bacteria Gammaproteobacteria 30689 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 GENOME30689 Genome 0.478 4274 4658697 8 7 7 75 Bacteria Gammaproteobacteria 30703 Aliivibrio salmonicida LFI1238 GENOME30703 Genome 0.61029 4284 4655660 13 12 12 104 Bacteria Firmicutes 30729 Coprothermobacter proteolyticus DSM 5265 GENOME30729 Genome 0.5523 1482 1424912 2 2 2 47 Bacteria Other Bacteria 30731 Dictyoglomus thermophilum H-6-12 GENOME30731 Genome 0.6626 1912 1959987 2 2 2 46 Bacteria Other Bacteria 30733 Thermodesulfovibrio yellowstonii DSM 11347 GENOME30733 Genome 0.6587 2033 2003803 1 1 1 48 Bacteria Firmicutes 30781 Streptococcus equi subsp. zooepidemicus MGCS10565 GENOME30781 Genome 0.5816 1893 2024171 5 5 5 57 Bacteria Gammaproteobacteria 30943 Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 GENOME30943 Genome 0.4782 4284 4581797 8 7 7 81 Bacteria Gammaproteobacteria 30993 Acinetobacter baumannii AB307-0294 GENOME30993 Genome 0.6096 3458 3760981 6 6 6 73 Bacteria Gammaproteobacteria 31099 Haemophilus parasuis SH0165 GENOME31099 Genome 0.6001 2021 2269156 8 6 6 56 Bacteria Gammaproteobacteria 31101 Pseudomonas aeruginosa LESB58 GENOME31101 Genome 0.337 5965 6601757 4 4 4 68 Bacteria Alphaproteobacteria 31111 Rhodobacter sphaeroides KD131 GENOME31111 Genome 0.309048 4569 4711139 4 4 4 54 Bacteria Gammaproteobacteria 31223 Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) GENOME31223 Genome 0.7371 553 641895 1 1 1 32 Bacteria Gammaproteobacteria 31225 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) GENOME31225 Genome 0.7371 555 642122 1 1 1 32 Bacteria Firmicutes 31233 Streptococcus pneumoniae ATCC 700669 GENOME31233 Genome 0.6051 2135 2221315 4 4 4 58 Bacteria Actinobacteria 31271 Mycobacterium leprae Br4923 GENOME31271 Genome 0.422 2720 3268071 1 1 1 45 Bacteria Epsilonproteobacteria 31341 Helicobacter pylori G27 GENOME31341 Genome 0.611342 1504 1663013 3 2 2 36 Bacteria Alphaproteobacteria 32027 Caulobacter crescentus NA1000 GENOME32027 Genome 0.3283 3877 4042929 2 2 2 51 Bacteria Epsilonproteobacteria 32291 Helicobacter pylori P12 GENOME32291 Genome 0.612128 1578 1684038 2 2 2 36 Bacteria Chloroflexi 32569 Thermomicrobium roseum DSM 5159 GENOME32569 Genome 0.357121 2859 2920744 2 2 2 49 Bacteria Gammaproteobacteria 32571 Escherichia coli O127:H6 str. E2348/69 GENOME32571 Genome 0.494768 4824 5069678 8 7 7 92 Bacteria Gammaproteobacteria 32815 Vibrio splendidus LGP32 GENOME32815 Genome 0.560947 4436 4974821 9 8 8 114 Bacteria Firmicutes 33271 Clostridium kluyveri NBRC 12016 GENOME33271 Genome 0.679894 3523 3955303 6 7 7 61 Bacteria Gammaproteobacteria 33369 Escherichia fergusonii ATCC 35469 GENOME33369 Genome 0.5006 4319 4588711 8 7 7 87 Bacteria Gammaproteobacteria 33373 Escherichia coli IAI1 GENOME33373 Genome 0.4921 4443 4700560 8 7 7 86 Bacteria Gammaproteobacteria 33375 Escherichia coli S88 GENOME33375 Genome 0.4932 4847 5032268 8 7 7 91 Bacteria Gammaproteobacteria 33409 Escherichia coli ED1a GENOME33409 Genome 0.4927 5123 5209548 8 7 7 91 Bacteria Gammaproteobacteria 33411 Escherichia coli IAI39 GENOME33411 Genome 0.4937 4892 5132068 8 7 7 88 Bacteria Gammaproteobacteria 33413 Escherichia coli 55989 GENOME33413 Genome 0.4934 4919 5154862 8 7 7 94 Bacteria Gammaproteobacteria 33415 Escherichia coli UMN026 GENOME33415 Genome 0.492848 5058 5324391 8 7 7 88 Bacteria Gammaproteobacteria 33825 Escherichia coli LF82 GENOME33825 Genome 0.493 4319 4773108 8 7 7 86