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Table of genomes considered in the study and links to the estimated position preference (PP) values:

For each organism, the kingdom and links are provided to the estimated position preference (PP) values.
PP values were estimated for each CDS and named by the accession number of the Genbank file,
from which it originates, and the start position of the CDS


Genome Kingdom PP values
Aquifex aeolicus VF5BacteriaPP
Acidobacteria bacterium Ellin345BacteriaPP
Anaeromyxobacter dehalogenans 2CP-CBacteriaPP
Archaeoglobus fulgidus DSM4304ArchaeaPP
Ashbya gossypii ATCC10895EukaryotesPP
Anaplasma marginale StMariesBacteriaPP
Anabaena nostoc PCC7120BacteriaPP
Aeropyrum pernix K1ArchaeaPP
Acinetobacter species ADP1BacteriaPP
Azoarcus species EbN1BacteriaPP
Agrobacterium tumefaciens C58-CereonBacteriaPP
Agrobacterium tumefaciens C58-UWashingtonBacteriaPP
Anabaena variabilis ATCC29413BacteriaPP
Brucella abortus 9-941BacteriaPP
Bacillus anthracis Ames_A2084BacteriaPP
Bacillus anthracis AmesBacteriaPP
Bacillus anthracis SterneBacteriaPP
Buchnera aphidicola APSBacteriaPP
Buchnera aphidicola BBpBacteriaPP
Buchnera aphidicola SgBacteriaPP
Bdellovibrio bacteriovorus HD100BacteriaPP
Bordetella bronchiseptica RB50BacteriaPP
Borrelia burgdorferi B31BacteriaPP
Bacillus cereus ATCC10987BacteriaPP
Bacillus cereus ATCC14579BacteriaPP
Bacillus cereus ZKBacteriaPP
Baumannia cicadellinicola HcBacteriaPP
Bacillus clausii KSMK16BacteriaPP
Blochmannia floridanus StrainBacteriaPP
Bacteroides fragilis NCTC9343BacteriaPP
Bacteroides fragilis YCH46BacteriaPP
Borrelia garinii PBiBacteriaPP
Bacillus halodurans C125BacteriaPP
Bartonella henselae Houston-1BacteriaPP
Bradyrhizobium japonicum USDA110BacteriaPP
Bacillus licheniformis ATCC14580BacteriaPP
Bacillus licheniformis ATCC14580_Veith_etalBacteriaPP
Bacillus licheniformis DSM13BacteriaPP
Bifidobacterium longum NCC2705BacteriaPP
Burkholderia mallei ATCC23344BacteriaPP
Brucella melitensis 16MBacteriaPP
Brucella melitensis AbortusBacteriaPP
Bordetella parapertussis 12822BacteriaPP
Blochmannia pennsylvanicus BPENBacteriaPP
Bordetella pertussis TohamaIBacteriaPP
Burkholderia pseudomallei 1710bBacteriaPP
Burkholderia pseudomallei K96243BacteriaPP
Bartonella quintana ToulouseBacteriaPP
Burkholderia species 383BacteriaPP
Bacillus subtilis 168BacteriaPP
Brucella Suis 1330BacteriaPP
Burkholderia thailandensis E264BacteriaPP
Bacteroides thetaiotaomicron VPI5482BacteriaPP
Bacillus thuringiensis 9727BacteriaPP
Burkholderia xenovorans LB400BacteriaPP
Clostridium acetobutylicum ATCC824BacteriaPP
Cyanobacteria bacterium YellowstoneABacteriaPP
Cyanobacteria bacterium YellowstoneBBacteriaPP
Coxiella burnetii RSA493BacteriaPP
Chlorobium chlorochromatii CaD3BacteriaPP
Caulobacter cresentus CB15BacteriaPP
Corynebacterium diphtheriae NCTC13129BacteriaPP
Corynebacterium efficiens YS314BacteriaPP
Corynebacterium glutamicum ATCC13032_IS-type4-5BacteriaPP
Corynebacterium glutamicum ATCC13032BacteriaPP
Carboxydothermus hydrogenoformans Z2901BacteriaPP
Corynebacterium jeikeium K411BacteriaPP
Campylobacter jejuni NCTC11168BacteriaPP
Campylobacter jejuni RM1221BacteriaPP
Clostridium perfringens 13BacteriaPP
Colwellia psychrerythraea 34HBacteriaPP
Chromohalobacter salexigens DSM3043BacteriaPP
Chlorobium tepidum TLSBacteriaPP
Clostridium tetani E88BacteriaPP
Chlamydia trachomatis AHAR13BacteriaPP
Chromobacterium violaceum ATCC12472BacteriaPP
Dechloromonas aromatica RCBBacteriaPP
Desulfovibrio desulfuricans G20BacteriaPP
Dehalococcoides ethenogenes 195BacteriaPP
Deinococcus geothermalis DSM11300BacteriaPP
Desulfitobacterium hafniense Y51BacteriaPP
Desulfotalea psychrophila LSv54BacteriaPP
Deinococcus radiodurans R1BacteriaPP
Dehalococcoides species CBDB1BacteriaPP
Desulfovibrio vulgaris HildenboroughBacteriaPP
Erwinia carotovora SCRI1043BacteriaPP
Escherichia coli CFT073BacteriaPP
Escherichia coli K-12_MG1655BacteriaPP
Escherichia coli K-12_W3110BacteriaPP
Escherichia coli O157_EDL93BacteriaPP
Escherichia coli O157_RIMD0509952BacteriaPP
Escherichia coli UTI89BacteriaPP
Encephalitozoon cuniculi GBM1EukaryotesPP
Enterococcus faecalis V583BacteriaPP
Erythrobacter litoralis HTCC2594BacteriaPP
Ehrlichia ruminantium Welgevonden-1BacteriaPP
Ehrlichia ruminantium Welgevonden-2BacteriaPP
Fusobacterium nucleatum ATCC25586BacteriaPP
Frankia species CcI3BacteriaPP
Francisella tularensis LVSBacteriaPP
Francisella tularensis SCHUS4BacteriaPP
Geobacillus kaustophilus HTA426BacteriaPP
Geobacter metallireducens GS15BacteriaPP
Gluconobacter oxydans 621HBacteriaPP
Geobacter sulfurreducens PCABacteriaPP
Gloeobacter violaceus PCC7421BacteriaPP
Hahella chejuensis KCTC2396BacteriaPP
Haemophilus ducreyi 3500HPBacteriaPP
Helicobacter hepaticus ATCC51449BacteriaPP
Haemophilus influenzae 86-028NPBacteriaPP
Haemophilus influenzae RdBacteriaPP
Haloarcula marismortui ATCC43049ArchaeaPP
Helicobacter pylori 26695BacteriaPP
Helicobacter pylori HPAG1BacteriaPP
Helicobacter pylori J99BacteriaPP
Halobacterium species NRC1ArchaeaPP
Idiomarina loihiensis L2TRBacteriaPP
Jannaschia species CCS1BacteriaPP
Kluyveromyces lactis NRRL_Y-1140EukaryotesPP
Lactobacillus acidophilus NCFMBacteriaPP
Lactobacillus delbrueckii bulgaricusBacteriaPP
Listeria innocua Clip11262BacteriaPP
Leptospira interrogans 56601BacteriaPP
Leptospira interrogans FiocruzL1130BacteriaPP
Lawsonia intracellularis PHEMN1-00BacteriaPP
Lactobacillus johnsonii NCC533BacteriaPP
Lactococcus lactis IL1403BacteriaPP
Listeria monocytogenes 4bBacteriaPP
Listeria monocytogenes EGDBacteriaPP
Lactobacillus plantarum WCFS1BacteriaPP
Legionella pneumophila LensBacteriaPP
Legionella pneumophila ParisBacteriaPP
Legionella pneumophila Philadelphia1BacteriaPP
Lactobacillus sakei 23KBacteriaPP
Lactobacillus sakei sakei23KBacteriaPP
Lactobacillus salivarius UCC118BacteriaPP
Leifsonia xyli CTCB07BacteriaPP
Methanosarcina acetivorans C2AArchaeaPP
Mycobacterium avium k10BacteriaPP
Methanosarcina barkeri fusaroArchaeaPP
Mycobacterium bovis AF212297BacteriaPP
Methanococcoides burtonii DSM6242ArchaeaPP
Mycoplasma capricolum ATCC27343BacteriaPP
Methylococcus capsulatus BathBacteriaPP
Methylobacillus flagellatus KTBacteriaPP
Mesoplasma florum L1BacteriaPP
Methanospirillum hungatei JF-1ArchaeaPP
Methanocaldococcus jannaschii DSM2661ArchaeaPP
Methanopyrus kandleri AV19ArchaeaPP
Mycobacterium leprae TNBacteriaPP
Mesorhizobium loti MAFF303099BacteriaPP
Magnetospirillum magneticum AMB1BacteriaPP
Methanococcus maripaludis S2ArchaeaPP
Methanosarcina mazei Goe1ArchaeaPP
Mycoplasma mycoides SCBacteriaPP
Mycoplasma pulmonis UAB_CTIPBacteriaPP
Mycobacterium species MCSBacteriaPP
Methanosphaera stadtmanae DSM3091ArchaeaPP
Mannheimia succiniciproducens MBEL55EBacteriaPP
Moorella thermoacetica ATCC39073BacteriaPP
Methanobacterium thermoautotrophicum delta-HArchaeaPP
Mycobacterium tuberculosis CDC1551BacteriaPP
Mycobacterium tuberculosis H37RvBacteriaPP
Myxococcus xanthus DK1622BacteriaPP
Novosphingobium aromaticivorans DSM12444BacteriaPP
Nitrosomonas europaea SchmidtBacteriaPP
Nocardia farcinica IFM10152BacteriaPP
Neisseria gonorrhoeae FA1090BacteriaPP
Nitrobacter hamburgensis X14BacteriaPP
Neisseria meningitidis A_Z2491BacteriaPP
Neisseria meningitidis B_MC58BacteriaPP
Nitrosospira multiformis ATCC25196BacteriaPP
Nitrosococcus oceani ATCC19707BacteriaPP
Natronomonas pharaonis DSM2160ArchaeaPP
Nitrobacter winogradskyi Nb255BacteriaPP
Oceanobacillus iheyensis HTE831BacteriaPP
Pyrococcus abyssi GE5ArchaeaPP
Propionibacterium acnes KPA171202BacteriaPP
Pyrobaculum aerophilum IM2ArchaeaPP
Pseudomonas aeruginosa PAO1BacteriaPP
Psychrobacter arcticum 273-4BacteriaPP
Phytoplasma asteris OYBacteriaPP
Pelobacter carbinolicus DSM2380BacteriaPP
Psychrobacter cryohalolentis K5BacteriaPP
Pseudomonas entomophila L48BacteriaPP
Pseudomonas fluorescens Pf-5BacteriaPP
Pseudomonas fluorescens PfO-1BacteriaPP
Pyrococcus furiosus DSM3638ArchaeaPP
Porphyromonas gingivalis W83BacteriaPP
Pseudoalteromonas haloplanktis TAC125BacteriaPP
Pyrococcus horikoshii OT3ArchaeaPP
Photorhabdus luminescens laumondiiTTO1BacteriaPP
Pelodictyon luteolum DSM273BacteriaPP
Prochlorococcus marinus MED4BacteriaPP
Prochlorococcus marinus MIT9312BacteriaPP
Prochlorococcus marinus MIT9313BacteriaPP
Prochlorococcus marinus NATL2ABacteriaPP
Prochlorococcus marinus SS120BacteriaPP
Pasteurella multocida Pm70BacteriaPP
Photobacterium profundum SS9BacteriaPP
Pseudomonas putida KT2440BacteriaPP
Polaromonas species JS666BacteriaPP
Parachlamydia species UWE25BacteriaPP
Pseudomonas syringae B728aBacteriaPP
Pseudomonas syringae DC3000BacteriaPP
Pseudomonas syringae phaseolicola1448ABacteriaPP
Picrophilus torridus DSM9790ArchaeaPP
Pelagibacter ubique HTCC1062BacteriaPP
Rhodopirellula baltica strain1BacteriaPP
Rickettsia bellii RML369-CBacteriaPP
Rickettsia conorii Malish7BacteriaPP
Rhizobium etli CFN42BacteriaPP
Ralstonia eutropha JMP134BacteriaPP
Rickettsia felis URRWXCal2BacteriaPP
Rhodoferax ferrireducens DSM15236BacteriaPP
Rhodopseudomonas palustris BisB18BacteriaPP
Rhodopseudomonas palustris BisB5BacteriaPP
Rhodopseudomonas palustris CGA009BacteriaPP
Rhodopseudomonas palustris HaA2BacteriaPP
Rickettsia prowazekii Madrid-EBacteriaPP
Rhodospirillum rubrum ATCC11170BacteriaPP
Ralstonia solanacearum GMI1000BacteriaPP
Rhodobacter sphaeroides 2.4.1BacteriaPP
Rhodobacter sphaeroides 241BacteriaPP
Rickettsia typhi WilmingtonBacteriaPP
Rubrobacter xylanophilus DSM9941BacteriaPP
Syntrophus aciditrophicus SBBacteriaPP
Sulfolobus acidocaldarius DSM639ArchaeaPP
Streptococcus agalactiae A909BacteriaPP
Streptococcus agalactiae NEM316BacteriaPP
Streptococcus agalactiae V2603BacteriaPP
Sphingopyxis alaskensis RB2256BacteriaPP
Staphylococcus aureus COLBacteriaPP
Staphylococcus aureus MRSA252BacteriaPP
Staphylococcus aureus MSSA476BacteriaPP
Staphylococcus aureus Mu50BacteriaPP
Staphylococcus aureus MW2BacteriaPP
Staphylococcus aureus N315BacteriaPP
Staphylococcus aureus NCTC8325BacteriaPP
Staphylococcus aureus RF122BacteriaPP
Staphylococcus aureus USA300BacteriaPP
Streptomyces avermitilis MA4680BacteriaPP
Shigella boydii Sb227BacteriaPP
Saccharomyces cerevisiae S288C-AB972EukaryotesPP
Streptomyces coelicolor A3BacteriaPP
Saccharophagus degradans 2-40BacteriaPP
Shewanella denitrificans OS217BacteriaPP
Shigella dysenteriae Sd197BacteriaPP
Synechococcus elongatus PCC6301BacteriaPP
Synechococcus elongatus PCC7942BacteriaPP
Salmonella enterica ATCC9150BacteriaPP
Salmonella enterica SCB67BacteriaPP
Salmonella enterica Ty2BacteriaPP
Salmonella enterica typhiCT18BacteriaPP
Staphylococcus epidermidis ATCC12228BacteriaPP
Staphylococcus epidermidis RP62ABacteriaPP
Shigella flexneri 2457TBacteriaPP
Shigella flexneri 2a301BacteriaPP
Sodalis glossinidius morsitansBacteriaPP
Staphylococcus haemolyticus JCSC1435BacteriaPP
Sinorhizobium meliloti 1021BacteriaPP
Streptococcus mutans UAB159BacteriaPP
Shewanella oneidensis MR1BacteriaPP
Streptococcus pneumoniae R6BacteriaPP
Streptococcus pneumoniae TIGR4BacteriaPP
Schizosaccharomyces pombe 972EukaryotesPP
Silicibacter pomeroyi DSS3BacteriaPP
Streptococcus pyogenes MGAS10270BacteriaPP
Streptococcus pyogenes MGAS10394BacteriaPP
Streptococcus pyogenes MGAS10750BacteriaPP
Streptococcus pyogenes MGAS2096BacteriaPP
Streptococcus pyogenes MGAS315BacteriaPP
Streptococcus pyogenes MGAS5005BacteriaPP
Streptococcus pyogenes MGAS6180BacteriaPP
Streptococcus pyogenes MGAS8232BacteriaPP
Streptococcus pyogenes MGAS9429BacteriaPP
Streptococcus pyogenes SF370BacteriaPP
Streptococcus pyogenes SSI1BacteriaPP
Salinibacter ruber DSM13855BacteriaPP
Staphylococcus saprophyticus saprophyticusBacteriaPP
Sulfolobus solfataricus P2ArchaeaPP
Shigella sonnei Ss046BacteriaPP
Synechococcus species CC9605BacteriaPP
Synechococcus species CC9902BacteriaPP
Synechocystis species PCC6803BacteriaPP
Silicibacter species TM1040BacteriaPP
Synechococcus sp WH8102BacteriaPP
Symbiobacterium thermophilum StrainBacteriaPP
Streptococcus thermophilus CNRZ1066BacteriaPP
Streptococcus thermophilus LMG18311BacteriaPP
Sulfolobus tokodaii 7ArchaeaPP
Salmonella typhimurium LT2BacteriaPP
Thermoplasma acidophilum DSM1728ArchaeaPP
Thiomicrospira crunogena XCL2BacteriaPP
Thiobacillus denitrificans ATCC25259BacteriaPP
Thiomicrospira denitrificans ATCC33889BacteriaPP
Treponema denticola ATCC35405BacteriaPP
Thermosynechococcus elongatus BP1BacteriaPP
Thermobifida fusca YXBacteriaPP
Thermococcus kodakaraensis KOD1ArchaeaPP
Thermotoga maritima MSB8BacteriaPP
Treponema pallidum NicholsBacteriaPP
Thermoanaerobacter tengcongensis MB4TBacteriaPP
Thermus thermophilus HB27BacteriaPP
Thermus thermophilus HB8BacteriaPP
Thermoplasma volcanium GSS1ArchaeaPP
Vibrio cholerae N16961BacteriaPP
Vibrio fischeri ES114BacteriaPP
Vibrio parahaemolyticus RIMD2210633BacteriaPP
Vibrio vulnificus CMCP6BacteriaPP
Vibrio vulnificus YJ016BacteriaPP
Wigglesworthia glossinidia StrainBacteriaPP
Wolinella succinogenes DSMZ1740BacteriaPP
Xanthomonas axonopodis citri306BacteriaPP
Xanthomonas campestris 8004BacteriaPP
Xanthomonas campestris 8510BacteriaPP
Xanthomonas campestris ATCC33913BacteriaPP
Xylella fastidiosa 9a5cBacteriaPP
Xylella fastidiosa Temecula1BacteriaPP
Xanthomonas oryzae KACC10331BacteriaPP
Xanthomonas oryzae MAFF311018BacteriaPP
Yersinia pestis AntiquaBacteriaPP
Yersinia pestis CO-92BiovarOrientalisBacteriaPP
Yersinia pestis KIMBacteriaPP
Yersinia pestis MediaevailsBacteriaPP
Yersinia pestis Nepal516BacteriaPP
Yersinia pseudotuberculosis IP32953BacteriaPP
Zymomonas mobilis ZM4BacteriaPP


Last updated: October 24th, 2006 by Hanni Willenbrock